Rh2AG463400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000653
Physical Location & Seq
Reverse (-)
68131422 .. 68133898
2477 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG463400.1

Sequence Viewer

Length: 669 bp
ATGGCTCCGACAAGGAGGAAGAGGACGAAGCAGAGGGCTGGTTATACCAGCATCAAGATCAACAAGGAGGAACAAAAAGAAGAAGTTGAGGCCTCGGAGCGTGAGATTGCGGATCTGAATCTGGGCGACAAGAGCAAGACTCATGGTAGCAAGGGGCAAGAATCAGAGGGTTCTGGAGACATTAAAGGTGATGACTATTTGGGCGAGGATGTGTCAGGTAGCAAGGGGAAAGAATCAAAGGATCATCTAAGAACTGCCCGTGATGACTTTTTGGGCATAAATATTCCAGTGTCATGTAGAAGGAAATTAGCGGGTTGTGCCTGTTGTGGCGAGTATGATCACCTTAATGTAACCTGCCCATTCCTAAAATATATTCCTCAAGGCGCTAAAATTGGCTGTTGCTTTGAGACAATGTGCCGGGGTTGTCACCATATTGGAAAGGTGTGCTGTGTTAAGAGGGGGAAGTCTGTGGGAGGATATGCTATGCTGAAGAGGTGTGCTCATTGTTTATGTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCCAAGGACGTCGTCTATGAGAAACTTGAATACTTAGATGGGGATGGGATTTCCTCAGAGTCTGAGGATGAGGATGCATTTCGACCCCGTAATCGTGCTCCATGGGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

24.79

Weight (kDa)

6.65

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 567
Acc36I ACCTGC 1 cut(s) 362
AciI CCGC 2 cut(s) 110, 311
AclWI GGATC 2 cut(s) 120, 249
AcuI CTGAAG 1 cut(s) 509
AcyI GRCGYC 1 cut(s) 564
AgsI TTSAA 1 cut(s) 584
Alw21I GWGCWC 2 cut(s) 502, 655
Alw26I GTCTC 2 cut(s) 171, 401
AlwI GGATC 2 cut(s) 120, 249
AlwNI CAGNNNCTG 1 cut(s) 617
AoxI GGCC 1 cut(s) 90
AspLEI GCGC 1 cut(s) 386
AsuC2I CCSGG 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 200, 332, 419
Bbv12I GWGCWC 2 cut(s) 502, 655
BccI CCATC 2 cut(s) 587, 593
BclI TGATCA 1 cut(s) 337
BcnI CCSGG 1 cut(s) 419
BcoDI GTCTC 2 cut(s) 171, 401
BfaI CTAG 1 cut(s) 552
BfoI RGCGCY 1 cut(s) 387
BfuAI ACCTGC 1 cut(s) 362
Bme1390I CCNGG 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 419
BmrI ACTGGG 1 cut(s) 532
BmsI GCATC 2 cut(s) 60, 619
BmuI ACTGGG 1 cut(s) 532
BplI GAGNNNNNCTC 4 cut(s) 124, 156, 484, 516
BpmI CTGGAG 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 363
BpuMI CCSGG 1 cut(s) 419
BsaBI GATNNNNATC 1 cut(s) 117
BsaHI GRCGYC 1 cut(s) 564
BsaJI CCNNGG 4 cut(s) 93, 418, 558, 656
Bse1I ACTGG 2 cut(s) 287, 527
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 93, 418, 558, 656
BseGI GGATG 4 cut(s) 214, 604, 628, 634
BseJI GATNNNNATC 1 cut(s) 117
BseMII CTCAG 2 cut(s) 609, 624
BseNI ACTGG 2 cut(s) 287, 527
BshFI GGCC 1 cut(s) 92
BsiHKAI GWGCWC 2 cut(s) 502, 655
BsiSI CCGG 1 cut(s) 418
BsmAI GTCTC 2 cut(s) 171, 401
BsnI GGCC 1 cut(s) 92
Bsp1286I GDGCHC 2 cut(s) 502, 655
Bsp143I GATC 4 cut(s) 57, 112, 241, 337
Bsp19I CCATGG 1 cut(s) 656
BspACI CCGC 2 cut(s) 110, 311
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 2 cut(s) 610, 623
BspLI GGNNCC 1 cut(s) 6
BspMI ACCTGC 1 cut(s) 362
BspPI GGATC 2 cut(s) 120, 249
BsrI ACTGG 2 cut(s) 287, 527
BssECI CCNNGG 4 cut(s) 93, 418, 558, 656
BssMI GATC 4 cut(s) 57, 112, 241, 337
BssNI GRCGYC 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 558, 656
Bst4CI ACNGT 1 cut(s) 539
Bst6I CTCTTC 2 cut(s) 14, 485
BstACI GRCGYC 1 cut(s) 564
BstDEI CTNAG 4 cut(s) 248, 589, 610, 618
BstDSI CCRYGG 1 cut(s) 656
BstF5I GGATG 4 cut(s) 214, 604, 628, 634
BstH2I RGCGCY 1 cut(s) 387
BstHHI GCGC 1 cut(s) 386
BstKTI GATC 4 cut(s) 60, 115, 244, 340
BstMAI GTCTC 2 cut(s) 171, 401
BstMBI GATC 4 cut(s) 57, 112, 241, 337
BstMWI GCNNNNNNNGC 2 cut(s) 132, 317
BstSCI CCNGG 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
BsuRI GGCC 1 cut(s) 92
BtgI CCRYGG 1 cut(s) 656
BtsCI GGATG 4 cut(s) 214, 604, 628, 634
BtsIMutI CAGTG 2 cut(s) 294, 520
BveI ACCTGC 1 cut(s) 362
CaiI CAGNNNCTG 1 cut(s) 617
CfoI GCGC 1 cut(s) 386
CviAII CATG 3 cut(s) 143, 294, 657
CviJI RGCY 4 cut(s) 5, 38, 92, 396
CviKI_1 RGCY 4 cut(s) 5, 38, 92, 396
DdeI CTNAG 4 cut(s) 248, 589, 610, 618
DpnI GATC 4 cut(s) 59, 114, 243, 339
DpnII GATC 4 cut(s) 57, 112, 241, 337
Eam1104I CTCTTC 2 cut(s) 14, 485
EarI CTCTTC 2 cut(s) 14, 485
Eco130I CCWWGG 2 cut(s) 558, 656
Eco147I AGGCCT 1 cut(s) 92
Eco57I CTGAAG 1 cut(s) 509
EcoT14I CCWWGG 2 cut(s) 558, 656
EcoT22I ATGCAT 1 cut(s) 634
ErhI CCWWGG 2 cut(s) 558, 656
FaeI CATG 3 cut(s) 146, 297, 660
FatI CATG 3 cut(s) 142, 293, 656
FauI CCCGC 1 cut(s) 304
FbaI TGATCA 1 cut(s) 337
FokI GGATG 4 cut(s) 221, 611, 635, 641
FspBI CTAG 1 cut(s) 552
GlaI GCGC 1 cut(s) 385
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 387
HaeIII GGCC 1 cut(s) 92
HapII CCGG 1 cut(s) 418
HhaI GCGC 1 cut(s) 386
Hin1I GRCGYC 1 cut(s) 564
Hin1II CATG 3 cut(s) 146, 297, 660
Hin6I GCGC 1 cut(s) 384
HinP1I GCGC 1 cut(s) 384
HinfI GANTC 5 cut(s) 118, 139, 161, 233, 614
HpaII CCGG 1 cut(s) 418
HphI GGTGA 3 cut(s) 200, 332, 419
Hpy188I TCNGA 6 cut(s) 9, 97, 117, 166, 613, 619
Hpy188III TCNNGA 2 cut(s) 55, 174
Hpy99I CGWCG 1 cut(s) 569
HpyAV CCTTC 1 cut(s) 294
HpyCH4III ACNGT 1 cut(s) 539
HpyCH4IV ACGT 1 cut(s) 564
HpyCH4V TGCA 1 cut(s) 632
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 317
HpyF3I CTNAG 4 cut(s) 248, 589, 610, 618
HpySE526I ACGT 1 cut(s) 564
Hsp92I GRCGYC 1 cut(s) 564
Hsp92II CATG 3 cut(s) 146, 297, 660
HspAI GCGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 337
Kzo9I GATC 4 cut(s) 57, 112, 241, 337
LmnI GCTCC 3 cut(s) 10, 97, 658
LweI GCATC 2 cut(s) 60, 619
MaeI CTAG 1 cut(s) 552
MaeII ACGT 1 cut(s) 564
MaeIII GTNAC 3 cut(s) 349, 425, 518
MalI GATC 4 cut(s) 59, 114, 243, 339
MboI GATC 4 cut(s) 57, 112, 241, 337
MboII GAAGA 4 cut(s) 31, 92, 502, 554
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 502, 655
MluCI AATT 2 cut(s) 305, 390
MlyI GAGTC 2 cut(s) 133, 623
MmeI TCCRAC 1 cut(s) 32
Mph1103I ATGCAT 1 cut(s) 634
MseI TTAA 3 cut(s) 183, 345, 453
MslI CAYNNNNRTG 1 cut(s) 345
MspI CCGG 1 cut(s) 418
MspR9I CCNGG 1 cut(s) 419
MwoI GCNNNNNNNGC 2 cut(s) 132, 317
NciI CCSGG 1 cut(s) 419
NcoI CCATGG 1 cut(s) 656
NdeII GATC 4 cut(s) 57, 112, 241, 337
NlaIII CATG 3 cut(s) 146, 297, 660
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 2 cut(s) 425, 518
NsiI ATGCAT 1 cut(s) 634
PceI AGGCCT 1 cut(s) 92
PfeI GAWTC 3 cut(s) 118, 161, 233
PflFI GACNNNGTC 1 cut(s) 566
PleI GAGTC 2 cut(s) 133, 622
PpsI GAGTC 2 cut(s) 133, 622
PspN4I GGNNCC 1 cut(s) 6
PstNI CAGNNNCTG 1 cut(s) 617
PsuI RGATCY 1 cut(s) 112
PsyI GACNNNGTC 1 cut(s) 566
RseI CAYNNNNRTG 1 cut(s) 345
SaqAI TTAA 3 cut(s) 183, 345, 453
Sau3AI GATC 4 cut(s) 57, 112, 241, 337
SchI GAGTC 2 cut(s) 133, 623
ScrFI CCNGG 1 cut(s) 419
SduI GDGCHC 2 cut(s) 502, 655
SetI ASST 7 cut(s) 190, 220, 345, 356, 444, 497, 567
SfaNI GCATC 2 cut(s) 60, 619
SmiMI CAYNNNNRTG 1 cut(s) 345
SmlI CTYRAG 1 cut(s) 378
SmoI CTYRAG 1 cut(s) 378
Sse9I AATT 2 cut(s) 305, 390
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 2 cut(s) 110, 311
SspI AATATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 552
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 1 cut(s) 417
StyI CCWWGG 2 cut(s) 558, 656
TaaI ACNGT 1 cut(s) 539
TaiI ACGT 1 cut(s) 567
TaqI TCGA 1 cut(s) 637
TasI AATT 2 cut(s) 305, 390
TfiI GAWTC 3 cut(s) 118, 161, 233
Tru1I TTAA 3 cut(s) 183, 345, 453
Tru9I TTAA 3 cut(s) 183, 345, 453
TscAI CASTG 2 cut(s) 294, 527
TseFI GTSAC 2 cut(s) 425, 518
Tsp45I GTSAC 2 cut(s) 425, 518
TspRI CASTG 2 cut(s) 294, 527
Tth111I GACNNNGTC 1 cut(s) 566
XspI CTAG 1 cut(s) 552
ZraI GACGTC 1 cut(s) 565
Zsp2I ATGCAT 1 cut(s) 634
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.