Rh1BG390900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000653
Physical Location & Seq
Reverse (-)
51708200 .. 51710326
2127 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG390900.1

Sequence Viewer

Length: 540 bp
ATGGAGTATTTGCCATCATTGAATTCCATGCCTAGAAGCTCAAGATGTATTCCTGCACCTGGACAAAGCGATAATATCAAGGACGAAGAATCTGAGGACCAGGAAACTGAGGACGAGGATCCGAATCTGCTGGCTGTTGAGAACGGCTGCGATGGTGAAAAATTATTAGGTCAGATGAAAACAAATGATGCTGGAGAGTCTTATCTCCGTATGGGCGACTATGTGTTTGTGTATGTGAAAGACTCTAAAAAGGAAGAAATCAGAGAAGAAGAAGAAGCAGAAGACGGTTGTCCCATCTGTCTTGGGGACCACTTTAACTTGGAATGCCCATGGCGAGATAATGTTCCACCAGGCCAACAAGTTGGGCGTCTCTATGACATAAAATGCAAGGGTTGTGGTAAGTGGGGACTTGCATGCTGTGCTGAGGGAGGACTTGCTGTTCTCAGGAGGTGTGGTCATTGTTTTGATTTTGGTCACTGGGGGGACGTCTGCCCCGACTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

20.09

Weight (kDa)

4.45

Isoelectric Point (pI)

65.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 489
AclWI GGATC 2 cut(s) 113, 126
AcsI RAATTY 1 cut(s) 22
AcyI GRCGYC 2 cut(s) 367, 486
AfiI CCNNNNNNNGG 1 cut(s) 59
AgsI TTSAA 1 cut(s) 22
AjnI CCWGG 3 cut(s) 58, 99, 349
AloI GAACNNNNNNTCC 2 cut(s) 423, 455
AluBI AGCT 1 cut(s) 39
AluI AGCT 1 cut(s) 39
Alw26I GTCTC 1 cut(s) 374
AlwI GGATC 2 cut(s) 113, 126
AoxI GGCC 2 cut(s) 352, 519
ApeKI GCWGC 1 cut(s) 147
ApoI RAATTY 1 cut(s) 22
ArsI GACNNNNNNTTYG 2 cut(s) 209, 241
AspS9I GGNCC 2 cut(s) 97, 307
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 2 cut(s) 97, 307
BamHI GGATCC 1 cut(s) 118
BbsI GAAGAC 1 cut(s) 288
BbvCI CCTCAGC 1 cut(s) 423
BbvI GCAGC 1 cut(s) 134
BccI CCATC 3 cut(s) 22, 146, 302
BceAI ACGGC 1 cut(s) 160
BciT130I CCWGG 3 cut(s) 60, 101, 351
BcoDI GTCTC 1 cut(s) 374
BfaI CTAG 1 cut(s) 33
BisI GCNGC 1 cut(s) 148
BlsI GCNGC 1 cut(s) 149
Bme1390I CCNGG 3 cut(s) 60, 101, 351
Bme18I GGWCC 2 cut(s) 97, 307
BmgT120I GGNCC 2 cut(s) 97, 307
BmiI GGNNCC 2 cut(s) 120, 308
BmrFI CCNGG 3 cut(s) 60, 101, 351
BmrI ACTGGG 1 cut(s) 487
BmsI GCATC 1 cut(s) 178
BmuI ACTGGG 1 cut(s) 487
BoxI GACNNNNGTC 1 cut(s) 288
BpiI GAAGAC 1 cut(s) 288
BpmI CTGGAG 1 cut(s) 213
Bpu10I CCTNAGC 1 cut(s) 423
BpuEI CTTGAG 1 cut(s) 25
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 2 cut(s) 367, 486
BsaJI CCNNGG 1 cut(s) 329
BsaXI ACNNNNNCTCC 2 cut(s) 439, 469
Bsc4I CCNNNNNNNGG 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 482
Bse8I GATNNNNATC 1 cut(s) 123
BseBI CCWGG 3 cut(s) 60, 101, 351
BseDI CCNNGG 1 cut(s) 329
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 59
BseMII CTCAG 4 cut(s) 84, 99, 414, 457
BseNI ACTGG 1 cut(s) 482
BseXI GCAGC 1 cut(s) 134
BsgI GTGCAG 1 cut(s) 39
BshFI GGCC 2 cut(s) 354, 521
BslFI GGGAC 4 cut(s) 276, 320, 420, 497
BslI CCNNNNNNNGG 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 374
BsmBI CGTCTC 1 cut(s) 374
BsmFI GGGAC 4 cut(s) 276, 320, 420, 497
BsmI GAATGC 1 cut(s) 329
BsnI GGCC 2 cut(s) 354, 521
Bsp143I GATC 1 cut(s) 118
Bsp19I CCATGG 1 cut(s) 329
BspANI GGCC 2 cut(s) 354, 521
BspCNI CTCAG 4 cut(s) 85, 100, 415, 456
BspLI GGNNCC 2 cut(s) 120, 308
BspPI GGATC 2 cut(s) 113, 126
BsrI ACTGG 1 cut(s) 482
BssECI CCNNGG 1 cut(s) 329
BssMI GATC 1 cut(s) 118
BssNI GRCGYC 2 cut(s) 367, 486
BssT1I CCWWGG 1 cut(s) 329
Bst2UI CCWGG 3 cut(s) 60, 101, 351
Bst4CI ACNGT 1 cut(s) 287
BstACI GRCGYC 2 cut(s) 367, 486
BstAPI GCANNNNNTGC 1 cut(s) 419
BstC8I GCNNGC 2 cut(s) 132, 415
BstDEI CTNAG 4 cut(s) 93, 108, 423, 443
BstDSI CCRYGG 1 cut(s) 329
BstKTI GATC 1 cut(s) 121
BstMAI GTCTC 1 cut(s) 374
BstMBI GATC 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 419
BstNI CCWGG 3 cut(s) 60, 101, 351
BstNSI RCATGY 1 cut(s) 417
BstPAI GACNNNNGTC 1 cut(s) 288
BstSCI CCNGG 3 cut(s) 58, 99, 349
BstV1I GCAGC 1 cut(s) 134
BstV2I GAAGAC 1 cut(s) 288
BstX2I RGATCY 1 cut(s) 118
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 1 cut(s) 118
BsuRI GGCC 2 cut(s) 354, 521
BtgI CCRYGG 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 165
BtsIMutI CAGTG 1 cut(s) 475
Cac8I GCNNGC 2 cut(s) 132, 415
Cfr13I GGNCC 2 cut(s) 97, 307
CseI GACGC 1 cut(s) 356
CspCI CAANNNNNGTGG 2 cut(s) 376, 411
CviAII CATG 4 cut(s) 28, 330, 414, 537
CviJI RGCY 5 cut(s) 39, 134, 147, 354, 521
CviKI_1 RGCY 5 cut(s) 39, 134, 147, 354, 521
DdeI CTNAG 4 cut(s) 93, 108, 423, 443
DpnI GATC 1 cut(s) 120
DpnII GATC 1 cut(s) 118
Eco130I CCWWGG 1 cut(s) 329
Eco47I GGWCC 2 cut(s) 97, 307
EcoRI GAATTC 1 cut(s) 22
EcoRII CCWGG 3 cut(s) 58, 99, 349
EcoT14I CCWWGG 1 cut(s) 329
ErhI CCWWGG 1 cut(s) 329
Esp3I CGTCTC 1 cut(s) 374
FaeI CATG 4 cut(s) 31, 333, 417, 540
FaqI GGGAC 4 cut(s) 276, 320, 420, 497
FatI CATG 4 cut(s) 27, 329, 413, 536
Fnu4HI GCNGC 1 cut(s) 148
Fsp4HI GCNGC 1 cut(s) 148
FspBI CTAG 1 cut(s) 33
GluI GCNGC 1 cut(s) 148
GsuI CTGGAG 1 cut(s) 213
HaeIII GGCC 2 cut(s) 354, 521
HgaI GACGC 1 cut(s) 356
Hin1I GRCGYC 2 cut(s) 367, 486
Hin1II CATG 4 cut(s) 31, 333, 417, 540
HinfI GANTC 4 cut(s) 89, 124, 197, 242
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 4 cut(s) 94, 123, 174, 263
Hpy188III TCNNGA 2 cut(s) 42, 445
HpyAV CCTTC 1 cut(s) 532
HpyCH4III ACNGT 1 cut(s) 287
HpyCH4IV ACGT 1 cut(s) 486
HpyCH4V TGCA 3 cut(s) 56, 387, 413
HpyF10VI GCNNNNNNNGC 1 cut(s) 419
HpyF3I CTNAG 4 cut(s) 93, 108, 423, 443
HpySE526I ACGT 1 cut(s) 486
Hsp92I GRCGYC 2 cut(s) 367, 486
Hsp92II CATG 4 cut(s) 31, 333, 417, 540
Kzo9I GATC 1 cut(s) 118
Lsp1109I GCAGC 1 cut(s) 134
LweI GCATC 1 cut(s) 178
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 486
MaeIII GTNAC 1 cut(s) 473
MalI GATC 1 cut(s) 120
MboI GATC 1 cut(s) 118
MboII GAAGA 6 cut(s) 98, 266, 278, 281, 284, 293
MflI RGATCY 1 cut(s) 118
MluCI AATT 3 cut(s) 22, 161, 529
MlyI GAGTC 2 cut(s) 206, 236
MnlI CCTC 6 cut(s) 88, 103, 109, 418, 422, 441
MseI TTAA 1 cut(s) 315
MspR9I CCNGG 3 cut(s) 60, 101, 351
Mva1269I GAATGC 1 cut(s) 329
MvaI CCWGG 3 cut(s) 60, 101, 351
MwoI GCNNNNNNNGC 1 cut(s) 419
NcoI CCATGG 1 cut(s) 329
NdeII GATC 1 cut(s) 118
NlaIII CATG 4 cut(s) 31, 333, 417, 540
NlaIV GGNNCC 2 cut(s) 120, 308
NmuCI GTSAC 1 cut(s) 473
NspI RCATGY 1 cut(s) 417
PaeI GCATGC 1 cut(s) 417
PcsI WCGNNNNNNNCGW 1 cut(s) 492
PctI GAATGC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 89, 124
PkrI GCNGC 1 cut(s) 149
PleI GAGTC 2 cut(s) 205, 236
PpsI GAGTC 2 cut(s) 205, 236
PshAI GACNNNNGTC 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 58, 99, 349
PspGI CCWGG 3 cut(s) 58, 99, 349
PspN4I GGNNCC 2 cut(s) 120, 308
PspPI GGNCC 2 cut(s) 97, 307
PsuI RGATCY 1 cut(s) 118
SaqAI TTAA 1 cut(s) 315
SatI GCNGC 1 cut(s) 148
Sau3AI GATC 1 cut(s) 118
Sau96I GGNCC 2 cut(s) 97, 307
SchI GAGTC 2 cut(s) 206, 236
ScrFI CCNGG 3 cut(s) 60, 101, 351
SetI ASST 5 cut(s) 41, 61, 172, 452, 489
SfaNI GCATC 1 cut(s) 178
SinI GGWCC 2 cut(s) 97, 307
SmlI CTYRAG 1 cut(s) 40
SmoI CTYRAG 1 cut(s) 40
SphI GCATGC 1 cut(s) 417
Sse9I AATT 3 cut(s) 22, 161, 529
SspMI CTAG 1 cut(s) 33
StyD4I CCNGG 3 cut(s) 58, 99, 349
StyI CCWWGG 1 cut(s) 329
TaaI ACNGT 1 cut(s) 287
TaiI ACGT 1 cut(s) 489
TasI AATT 3 cut(s) 22, 161, 529
TfiI GAWTC 2 cut(s) 89, 124
Tru1I TTAA 1 cut(s) 315
Tru9I TTAA 1 cut(s) 315
TscAI CASTG 1 cut(s) 482
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 1 cut(s) 147
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 1 cut(s) 191
TspGWI ACGGA 1 cut(s) 197
TspRI CASTG 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 97, 307
XapI RAATTY 1 cut(s) 22
XceI RCATGY 1 cut(s) 417
XspI CTAG 1 cut(s) 33
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.