RchiOBHm_Chr1g0362141

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000653
Physical Location & Seq
Reverse (-)
53827750 .. 53829085
1336 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58697

Sequence Viewer

Length: 354 bp
ATGATGCTGGAGAGTCTTATCTCCGTATGGGCGACTGTGTTTATGTATGTGAAAGACTCTAAAAAGGAAGAAATCAGAGACGAAGAAGAAGCAGAAGACGGTTGTCCTATCTGTCTTGGGGACCACTTTAGCTTGGAATGCCCATGGCGAGATAATGTTCCACCAGGCCAACAAGTTGGGCGTCTCTATGACATAAAATGCAAGGGTTGTGGTAAGTGGGGACTTGCATGCAGTGCTGAGGGAGGACTTGCCGTTCTCAGGAGGTGTGGTCATTGTTTTGATTTTGGTCACTGGGGGGACGTCTGCCCCAACTATAAGTATATGCCCCTTCCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.23

Weight (kDa)

5.09

Isoelectric Point (pI)

60.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 303
AcyI GRCGYC 2 cut(s) 181, 300
AfiI CCNNNNNNNGG 1 cut(s) 258
AjnI CCWGG 1 cut(s) 163
AloI GAACNNNNNNTCC 2 cut(s) 237, 269
AluBI AGCT 1 cut(s) 132
AluI AGCT 1 cut(s) 132
Alw26I GTCTC 2 cut(s) 72, 188
AoxI GGCC 2 cut(s) 166, 333
AspS9I GGNCC 1 cut(s) 121
AvaII GGWCC 1 cut(s) 121
BbsI GAAGAC 1 cut(s) 102
BbvCI CCTCAGC 1 cut(s) 237
BceAI ACGGC 1 cut(s) 236
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 72, 188
Bme1390I CCNGG 1 cut(s) 165
Bme18I GGWCC 1 cut(s) 121
BmgT120I GGNCC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 122
BmrFI CCNGG 1 cut(s) 165
BmrI ACTGGG 1 cut(s) 301
BmuI ACTGGG 1 cut(s) 301
BoxI GACNNNNGTC 1 cut(s) 102
BpiI GAAGAC 1 cut(s) 102
BpmI CTGGAG 1 cut(s) 29
Bpu10I CCTNAGC 1 cut(s) 237
BsaHI GRCGYC 2 cut(s) 181, 300
BsaJI CCNNGG 1 cut(s) 143
BsaXI ACNNNNNCTCC 2 cut(s) 253, 283
Bsc4I CCNNNNNNNGG 1 cut(s) 258
Bse1I ACTGG 1 cut(s) 296
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 1 cut(s) 143
BseLI CCNNNNNNNGG 1 cut(s) 258
BseMII CTCAG 2 cut(s) 228, 271
BseNI ACTGG 1 cut(s) 296
BshFI GGCC 2 cut(s) 168, 335
BsiSI CCGG 1 cut(s) 332
BslFI GGGAC 3 cut(s) 134, 234, 311
BslI CCNNNNNNNGG 1 cut(s) 258
BsmAI GTCTC 2 cut(s) 72, 188
BsmBI CGTCTC 2 cut(s) 72, 188
BsmFI GGGAC 3 cut(s) 134, 234, 311
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 2 cut(s) 168, 335
Bsp19I CCATGG 1 cut(s) 143
BspANI GGCC 2 cut(s) 168, 335
BspCNI CTCAG 2 cut(s) 229, 270
BspLI GGNNCC 1 cut(s) 122
BsrI ACTGG 1 cut(s) 296
BssECI CCNNGG 1 cut(s) 143
BssNI GRCGYC 2 cut(s) 181, 300
BssT1I CCWWGG 1 cut(s) 143
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 2 cut(s) 37, 101
BstACI GRCGYC 2 cut(s) 181, 300
BstAPI GCANNNNNTGC 1 cut(s) 233
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 2 cut(s) 237, 257
BstDSI CCRYGG 1 cut(s) 143
BstMAI GTCTC 2 cut(s) 72, 188
BstMWI GCNNNNNNNGC 2 cut(s) 138, 233
BstNI CCWGG 1 cut(s) 165
BstNSI RCATGY 1 cut(s) 231
BstPAI GACNNNNGTC 1 cut(s) 102
BstSCI CCNGG 1 cut(s) 163
BstV2I GAAGAC 1 cut(s) 102
BstXI CCANNNNNNTGG 1 cut(s) 176
BsuRI GGCC 2 cut(s) 168, 335
BtgI CCRYGG 1 cut(s) 143
BtsI GCAGTG 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 238, 289
Cac8I GCNNGC 1 cut(s) 229
Cfr13I GGNCC 1 cut(s) 121
CseI GACGC 1 cut(s) 170
CspCI CAANNNNNGTGG 2 cut(s) 190, 225
CviAII CATG 3 cut(s) 144, 228, 351
CviJI RGCY 3 cut(s) 132, 168, 335
CviKI_1 RGCY 3 cut(s) 132, 168, 335
DdeI CTNAG 2 cut(s) 237, 257
Eco130I CCWWGG 1 cut(s) 143
Eco47I GGWCC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 143
ErhI CCWWGG 1 cut(s) 143
Esp3I CGTCTC 2 cut(s) 72, 188
FaeI CATG 3 cut(s) 147, 231, 354
FaqI GGGAC 3 cut(s) 134, 234, 311
FatI CATG 3 cut(s) 143, 227, 350
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 2 cut(s) 168, 335
HapII CCGG 1 cut(s) 332
HgaI GACGC 1 cut(s) 170
Hin1I GRCGYC 2 cut(s) 181, 300
Hin1II CATG 3 cut(s) 147, 231, 354
HinfI GANTC 2 cut(s) 13, 56
HpaII CCGG 1 cut(s) 332
Hpy188I TCNGA 1 cut(s) 77
Hpy188III TCNNGA 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 338, 346
HpyCH4III ACNGT 2 cut(s) 37, 101
HpyCH4IV ACGT 1 cut(s) 300
HpyCH4V TGCA 3 cut(s) 201, 227, 231
HpyF10VI GCNNNNNNNGC 2 cut(s) 138, 233
HpyF3I CTNAG 2 cut(s) 237, 257
HpySE526I ACGT 1 cut(s) 300
Hsp92I GRCGYC 2 cut(s) 181, 300
Hsp92II CATG 3 cut(s) 147, 231, 354
LpnPI CCDG 5 cut(s) 150, 177, 244, 277, 345
MaeII ACGT 1 cut(s) 300
MaeIII GTNAC 1 cut(s) 287
MboII GAAGA 4 cut(s) 80, 95, 98, 107
MluCI AATT 1 cut(s) 343
MlyI GAGTC 2 cut(s) 22, 50
MnlI CCTC 3 cut(s) 232, 236, 255
MspI CCGG 1 cut(s) 332
MspR9I CCNGG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 165
MwoI GCNNNNNNNGC 2 cut(s) 138, 233
NcoI CCATGG 1 cut(s) 143
NlaIII CATG 3 cut(s) 147, 231, 354
NlaIV GGNNCC 1 cut(s) 122
NmuCI GTSAC 1 cut(s) 287
NspI RCATGY 1 cut(s) 231
PaeI GCATGC 1 cut(s) 231
PctI GAATGC 1 cut(s) 143
PleI GAGTC 2 cut(s) 21, 50
PpsI GAGTC 2 cut(s) 21, 50
PshAI GACNNNNGTC 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 1 cut(s) 122
PspPI GGNCC 1 cut(s) 121
Sau96I GGNCC 1 cut(s) 121
SchI GAGTC 2 cut(s) 22, 50
ScrFI CCNGG 1 cut(s) 165
SetI ASST 3 cut(s) 134, 266, 303
SinI GGWCC 1 cut(s) 121
SphI GCATGC 1 cut(s) 231
Sse9I AATT 1 cut(s) 343
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 143
TaaI ACNGT 2 cut(s) 37, 101
TaiI ACGT 1 cut(s) 303
TasI AATT 1 cut(s) 343
TscAI CASTG 2 cut(s) 238, 296
TseFI GTSAC 1 cut(s) 287
Tsp45I GTSAC 1 cut(s) 287
TspGWI ACGGA 1 cut(s) 13
TspRI CASTG 2 cut(s) 238, 296
VpaK11BI GGWCC 1 cut(s) 121
XceI RCATGY 1 cut(s) 231
ZraI GACGTC 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.