Rh1CG403600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000653
Physical Location & Seq
Reverse (-)
66952113 .. 66978070
25958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG403600.1

Sequence Viewer

Length: 546 bp
ATGCAAAAGCTTGGTCTCCAGATGAAGCTGCTGGGTTTTGGCAATTTCCCTGACAAGAGCACTCATGGACAAAGCGATAATATCAAGGACGAAGAATCTGAGGACCAGGAAACTGAGGACGAGGATCCGAATCTGCTGGCTGTTGAGAACGGCTGCGATGGTGAAAAATTATTAGGTCAGATGAAAACAAATGATGCTGGAGAGTCTTATCTCCGTATGGGCGACTATGTGTTTGTGTATGTGAAAGACTCTAAAAAGGAAGAAATCAGAGAAGAAGAAGAAGCAGAAGACGGTTGTCCCATCTGTCTTGGGGACCACTTTAACTTGGAATGCCCATGGCGAGATAATGTTCCACCAGGCCAACAAGTTGGGCGTCTCTATGACATAAAATGCAAGGGTTGTGGTAAGTGGGGACTTGCATGCTGTGCTGAGGGAGGACTTGCTGTTCTCAGGAGGTGTGGTCATTGTTTTGATTTTGGTCACTGGGGGGACGTCTGCCCCGACTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

181

Amino Acids

20.33

Weight (kDa)

4.55

Isoelectric Point (pI)

53.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 495
AclWI GGATC 2 cut(s) 119, 132
AcyI GRCGYC 2 cut(s) 373, 492
AjnI CCWGG 2 cut(s) 105, 355
AloI GAACNNNNNNTCC 2 cut(s) 429, 461
AluBI AGCT 2 cut(s) 10, 28
AluI AGCT 2 cut(s) 10, 28
Alw21I GWGCWC 1 cut(s) 62
Alw26I GTCTC 2 cut(s) 20, 380
AlwI GGATC 2 cut(s) 119, 132
AoxI GGCC 2 cut(s) 358, 525
ApeKI GCWGC 2 cut(s) 28, 153
ArsI GACNNNNNNTTYG 3 cut(s) 30, 215, 247
AspS9I GGNCC 2 cut(s) 103, 313
AsuHPI GGTGA 1 cut(s) 173
AvaII GGWCC 2 cut(s) 103, 313
BamHI GGATCC 1 cut(s) 124
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 62
BbvCI CCTCAGC 1 cut(s) 429
BbvI GCAGC 2 cut(s) 15, 140
BccI CCATC 2 cut(s) 152, 308
BceAI ACGGC 1 cut(s) 166
BciT130I CCWGG 2 cut(s) 107, 357
BcoDI GTCTC 2 cut(s) 20, 380
BisI GCNGC 2 cut(s) 29, 154
BlsI GCNGC 2 cut(s) 30, 155
Bme1390I CCNGG 2 cut(s) 107, 357
Bme18I GGWCC 2 cut(s) 103, 313
BmgT120I GGNCC 2 cut(s) 103, 313
BmiI GGNNCC 2 cut(s) 126, 314
BmrFI CCNGG 2 cut(s) 107, 357
BmrI ACTGGG 1 cut(s) 493
BmsI GCATC 1 cut(s) 184
BmuI ACTGGG 1 cut(s) 493
BoxI GACNNNNGTC 1 cut(s) 294
BpiI GAAGAC 1 cut(s) 294
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 429
BsaBI GATNNNNATC 1 cut(s) 129
BsaHI GRCGYC 2 cut(s) 373, 492
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 335
BsaXI ACNNNNNCTCC 2 cut(s) 445, 475
Bse1I ACTGG 1 cut(s) 488
Bse8I GATNNNNATC 1 cut(s) 129
BseBI CCWGG 2 cut(s) 107, 357
BseDI CCNNGG 1 cut(s) 335
BseJI GATNNNNATC 1 cut(s) 129
BseMII CTCAG 4 cut(s) 90, 105, 420, 463
BseNI ACTGG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 15, 140
BseYI CCCAGC 1 cut(s) 31
BshFI GGCC 2 cut(s) 360, 527
BsiHKAI GWGCWC 1 cut(s) 62
BslFI GGGAC 4 cut(s) 282, 326, 426, 503
BsmAI GTCTC 2 cut(s) 20, 380
BsmBI CGTCTC 1 cut(s) 380
BsmFI GGGAC 4 cut(s) 282, 326, 426, 503
BsmI GAATGC 1 cut(s) 335
BsnI GGCC 2 cut(s) 360, 527
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 62
Bsp143I GATC 1 cut(s) 124
Bsp19I CCATGG 1 cut(s) 335
BspANI GGCC 2 cut(s) 360, 527
BspCNI CTCAG 4 cut(s) 91, 106, 421, 462
BspLI GGNNCC 2 cut(s) 126, 314
BspPI GGATC 2 cut(s) 119, 132
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 488
BssECI CCNNGG 1 cut(s) 335
BssMI GATC 1 cut(s) 124
BssNI GRCGYC 2 cut(s) 373, 492
BssT1I CCWWGG 1 cut(s) 335
Bst2UI CCWGG 2 cut(s) 107, 357
Bst4CI ACNGT 1 cut(s) 293
BstACI GRCGYC 2 cut(s) 373, 492
BstAPI GCANNNNNTGC 1 cut(s) 425
BstC8I GCNNGC 2 cut(s) 138, 421
BstDEI CTNAG 4 cut(s) 99, 114, 429, 449
BstDSI CCRYGG 1 cut(s) 335
BstKTI GATC 1 cut(s) 127
BstMAI GTCTC 2 cut(s) 20, 380
BstMBI GATC 1 cut(s) 124
BstMWI GCNNNNNNNGC 1 cut(s) 425
BstNI CCWGG 2 cut(s) 107, 357
BstNSI RCATGY 1 cut(s) 423
BstPAI GACNNNNGTC 1 cut(s) 294
BstSCI CCNGG 2 cut(s) 105, 355
BstV1I GCAGC 2 cut(s) 15, 140
BstV2I GAAGAC 1 cut(s) 294
BstX2I RGATCY 1 cut(s) 124
BstXI CCANNNNNNTGG 1 cut(s) 368
BstYI RGATCY 1 cut(s) 124
BsuRI GGCC 2 cut(s) 360, 527
BtgI CCRYGG 1 cut(s) 335
BtgZI GCGATG 1 cut(s) 171
BtsIMutI CAGTG 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 138, 421
Cfr13I GGNCC 2 cut(s) 103, 313
CseI GACGC 1 cut(s) 362
CspCI CAANNNNNGTGG 2 cut(s) 382, 417
CviAII CATG 4 cut(s) 65, 336, 420, 543
CviJI RGCY 6 cut(s) 10, 28, 140, 153, 360, 527
CviKI_1 RGCY 6 cut(s) 10, 28, 140, 153, 360, 527
DdeI CTNAG 4 cut(s) 99, 114, 429, 449
DpnI GATC 1 cut(s) 126
DpnII GATC 1 cut(s) 124
Eco130I CCWWGG 1 cut(s) 335
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 2 cut(s) 103, 313
EcoRII CCWGG 2 cut(s) 105, 355
EcoT14I CCWWGG 1 cut(s) 335
ErhI CCWWGG 1 cut(s) 335
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 4 cut(s) 68, 339, 423, 546
FaqI GGGAC 4 cut(s) 282, 326, 426, 503
FatI CATG 4 cut(s) 64, 335, 419, 542
Fnu4HI GCNGC 2 cut(s) 29, 154
Fsp4HI GCNGC 2 cut(s) 29, 154
GluI GCNGC 2 cut(s) 29, 154
GsaI CCCAGC 1 cut(s) 35
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 2 cut(s) 360, 527
HgaI GACGC 1 cut(s) 362
Hin1I GRCGYC 2 cut(s) 373, 492
Hin1II CATG 4 cut(s) 68, 339, 423, 546
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 4 cut(s) 95, 130, 203, 248
HphI GGTGA 1 cut(s) 173
Hpy188I TCNGA 4 cut(s) 100, 129, 180, 269
Hpy188III TCNNGA 2 cut(s) 19, 451
HpyAV CCTTC 1 cut(s) 538
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 492
HpyCH4V TGCA 3 cut(s) 4, 393, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 425
HpyF3I CTNAG 4 cut(s) 99, 114, 429, 449
HpySE526I ACGT 1 cut(s) 492
Hsp92I GRCGYC 2 cut(s) 373, 492
Hsp92II CATG 4 cut(s) 68, 339, 423, 546
Kzo9I GATC 1 cut(s) 124
Lsp1109I GCAGC 2 cut(s) 15, 140
LweI GCATC 1 cut(s) 184
MaeII ACGT 1 cut(s) 492
MaeIII GTNAC 1 cut(s) 479
MalI GATC 1 cut(s) 126
MboI GATC 1 cut(s) 124
MboII GAAGA 6 cut(s) 104, 272, 284, 287, 290, 299
MflI RGATCY 1 cut(s) 124
MhlI GDGCHC 1 cut(s) 62
MluCI AATT 3 cut(s) 43, 167, 535
MlyI GAGTC 2 cut(s) 212, 242
MnlI CCTC 6 cut(s) 94, 109, 115, 424, 428, 447
MseI TTAA 1 cut(s) 321
MspR9I CCNGG 2 cut(s) 107, 357
Mva1269I GAATGC 1 cut(s) 335
MvaI CCWGG 2 cut(s) 107, 357
MwoI GCNNNNNNNGC 1 cut(s) 425
NcoI CCATGG 1 cut(s) 335
NdeII GATC 1 cut(s) 124
NlaIII CATG 4 cut(s) 68, 339, 423, 546
NlaIV GGNNCC 2 cut(s) 126, 314
NmuCI GTSAC 1 cut(s) 479
NspI RCATGY 1 cut(s) 423
PaeI GCATGC 1 cut(s) 423
PcsI WCGNNNNNNNCGW 1 cut(s) 498
PctI GAATGC 1 cut(s) 335
PfeI GAWTC 2 cut(s) 95, 130
PkrI GCNGC 2 cut(s) 30, 155
PleI GAGTC 2 cut(s) 211, 242
PpsI GAGTC 2 cut(s) 211, 242
PshAI GACNNNNGTC 1 cut(s) 294
Psp6I CCWGG 2 cut(s) 105, 355
PspFI CCCAGC 1 cut(s) 31
PspGI CCWGG 2 cut(s) 105, 355
PspN4I GGNNCC 2 cut(s) 126, 314
PspPI GGNCC 2 cut(s) 103, 313
PsuI RGATCY 1 cut(s) 124
SaqAI TTAA 1 cut(s) 321
SatI GCNGC 2 cut(s) 29, 154
Sau3AI GATC 1 cut(s) 124
Sau96I GGNCC 2 cut(s) 103, 313
SchI GAGTC 2 cut(s) 212, 242
ScrFI CCNGG 2 cut(s) 107, 357
SduI GDGCHC 1 cut(s) 62
SetI ASST 5 cut(s) 12, 30, 178, 458, 495
SfaNI GCATC 1 cut(s) 184
SinI GGWCC 2 cut(s) 103, 313
SphI GCATGC 1 cut(s) 423
Sse9I AATT 3 cut(s) 43, 167, 535
StyD4I CCNGG 2 cut(s) 105, 355
StyI CCWWGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 495
TasI AATT 3 cut(s) 43, 167, 535
TfiI GAWTC 2 cut(s) 95, 130
Tru1I TTAA 1 cut(s) 321
Tru9I TTAA 1 cut(s) 321
TscAI CASTG 1 cut(s) 488
TseFI GTSAC 1 cut(s) 479
TseI GCWGC 2 cut(s) 28, 153
Tsp45I GTSAC 1 cut(s) 479
TspDTI ATGAA 2 cut(s) 38, 197
TspGWI ACGGA 1 cut(s) 203
TspRI CASTG 1 cut(s) 488
VpaK11BI GGWCC 2 cut(s) 103, 313
XceI RCATGY 1 cut(s) 423
ZraI GACGTC 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.