Rh7AG294000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000653
Physical Location & Seq
Forward (+)
32063923 .. 32077634
13712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG294000.1

Sequence Viewer

Length: 891 bp
ATGGCCTTTTATGGCTACCGAATCACAAGACGGCTGCCGACAAACAATTCTTTCTCCTCTTGGTGGATTGTCAATCTTATTAAGACACTAATTCTATTTGCCTTGGAAAAAGTCAAAAGGTTTGCATTGTCCCAGTATAAAAGGCCAAACCCGCTGCTTAAGTTAGCAAAAACTGCCGGGCATCTTCTTCACACCGGCAAAACTCAAAGCGCAATGGTAAGTACATCCCTAGTACGAAAACACAGAGCTACCGAGTTCACTAAGATGAGAAGGGAGCTGAAGAAACAAAGAAGAAAGCTCGAGATACTGAATCTGAGAGACAAAGTCGAAGTCGAATATATACCAAAGCAAAATACCGACGAGAAATTATATTTTACTGATGAGGAATATGCAAGTAGGCGCTTGATTATACCAGAGGACGAAGCCGCCGAGTTCGCGGCGCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACTGAATCTGAACAACAGAGCCGAAGTCGCAGCGCTTCGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACCTTATAATAAAAGAAGATGGAGAAGTAAAAGATTATGAATATGGCTGTCGCGTTTGTGCTAACATGGATGAGAATCACTATGATTCGGACTGCCCATGGCTAGATAAACTGCCACCAGACCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGTGAGCTGTGGTGTTCCAAGAGAGGTTCCAAGCGAGGATATGCTTTTCTCAAGTCCTGTATATTTTGTCAGGCAGCTGGTCACTGGCCTTGGGAATGCCTCACTGGCCCCAAGATTCCGGGGCTCACGGAGGAGCTCGTCGAGGAGGTCATATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

296

Amino Acids

34.49

Weight (kDa)

9.38

Isoelectric Point (pI)

51.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 560
AccII CGCG 2 cut(s) 437, 606
AciI CCGC 3 cut(s) 152, 426, 437
AcoI YGGCCR 1 cut(s) 721
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 2 cut(s) 223, 234
AfeI AGCGCT 1 cut(s) 519
AfiI CCNNNNNNNGG 1 cut(s) 63
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 536
AluBI AGCT 8 cut(s) 248, 277, 298, 478, 549, 736, 806, 865
AluI AGCT 8 cut(s) 248, 277, 298, 478, 549, 736, 806, 865
Alw21I GWGCWC 1 cut(s) 867
Alw26I GTCTC 1 cut(s) 312
Ama87I CYCGRG 1 cut(s) 299
Aor51HI AGCGCT 1 cut(s) 519
AoxI GGCC 6 cut(s) 3, 143, 688, 721, 815, 835
ApeKI GCWGC 4 cut(s) 34, 154, 515, 803
ArsI GACNNNNNNTTYG 2 cut(s) 315, 347
AspLEI GCGC 4 cut(s) 212, 402, 442, 520
AspS9I GGNCC 2 cut(s) 689, 836
AsuC2I CCSGG 2 cut(s) 178, 849
AsuHPI GGTGA 1 cut(s) 743
AvaI CYCGRG 1 cut(s) 299
BalI TGGCCA 1 cut(s) 723
BanII GRGCYC 2 cut(s) 855, 867
Bbv12I GWGCWC 1 cut(s) 867
BbvI GCAGC 4 cut(s) 21, 141, 527, 815
BccI CCATC 2 cut(s) 450, 566
BceAI ACGGC 1 cut(s) 47
BcnI CCSGG 2 cut(s) 178, 849
BcoDI GTCTC 1 cut(s) 312
BfaI CTAG 2 cut(s) 230, 656
BfoI RGCGCY 2 cut(s) 403, 521
BfrI CTTAAG 1 cut(s) 158
BglI GCCNNNNNGGC 1 cut(s) 834
BisI GCNGC 6 cut(s) 35, 155, 426, 438, 516, 804
BlsI GCNGC 6 cut(s) 36, 156, 427, 439, 517, 805
Bme1390I CCNGG 2 cut(s) 178, 849
BmeT110I CYCGRG 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 689, 836
BmiI GGNNCC 2 cut(s) 757, 838
BmrFI CCNGG 2 cut(s) 178, 849
BmrI ACTGGG 1 cut(s) 127
BmsI GCATC 2 cut(s) 190, 720
BmuI ACTGGG 1 cut(s) 127
BpuEI CTTGAG 1 cut(s) 764
BpuMI CCSGG 2 cut(s) 178, 849
BsaBI GATNNNNATC 1 cut(s) 627
BsaJI CCNNGG 4 cut(s) 102, 650, 818, 848
Bsc4I CCNNNNNNNGG 1 cut(s) 63
Bse118I RCCGGY 1 cut(s) 194
Bse1I ACTGG 3 cut(s) 133, 818, 838
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 627
BseDI CCNNGG 4 cut(s) 102, 650, 818, 848
BseGI GGATG 2 cut(s) 224, 628
BseJI GATNNNNATC 1 cut(s) 627
BseLI CCNNNNNNNGG 1 cut(s) 63
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 305
BseNI ACTGG 3 cut(s) 133, 818, 838
BseRI GAGGAG 3 cut(s) 46, 875, 887
BseXI GCAGC 4 cut(s) 21, 141, 527, 815
Bsh1236I CGCG 2 cut(s) 437, 606
BshFI GGCC 6 cut(s) 5, 145, 690, 723, 817, 837
BsiHKAI GWGCWC 1 cut(s) 867
BsiHKCI CYCGRG 1 cut(s) 299
BsiSI CCGG 3 cut(s) 177, 195, 848
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 1 cut(s) 63
BsmAI GTCTC 1 cut(s) 312
BsmFI GGGAC 1 cut(s) 115
BsmI GAATGC 1 cut(s) 830
BsnI GGCC 6 cut(s) 5, 145, 690, 723, 817, 837
BsoBI CYCGRG 1 cut(s) 299
Bsp1286I GDGCHC 2 cut(s) 855, 867
Bsp19I CCATGG 1 cut(s) 650
BspACI CCGC 3 cut(s) 152, 426, 437
BspANI GGCC 6 cut(s) 5, 145, 690, 723, 817, 837
BspCNI CTCAG 1 cut(s) 306
BspFNI CGCG 2 cut(s) 437, 606
BspLI GGNNCC 2 cut(s) 757, 838
BspTI CTTAAG 1 cut(s) 158
BsrDI GCAATG 1 cut(s) 219
BsrFI RCCGGY 1 cut(s) 194
BsrI ACTGG 3 cut(s) 133, 818, 838
BssAI RCCGGY 1 cut(s) 194
BssECI CCNNGG 4 cut(s) 102, 650, 818, 848
BssT1I CCWWGG 3 cut(s) 102, 650, 818
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 1 cut(s) 444
BstDEI CTNAG 2 cut(s) 261, 314
BstDSI CCRYGG 1 cut(s) 650
BstF5I GGATG 2 cut(s) 224, 628
BstFNI CGCG 2 cut(s) 437, 606
BstH2I RGCGCY 2 cut(s) 403, 521
BstHHI GCGC 4 cut(s) 212, 402, 442, 520
BstMAI GTCTC 1 cut(s) 312
BstMWI GCNNNNNNNGC 6 cut(s) 151, 173, 434, 443, 512, 834
BstSCI CCNGG 2 cut(s) 176, 847
BstUI CGCG 2 cut(s) 437, 606
BstV1I GCAGC 4 cut(s) 21, 141, 527, 815
BsuRI GGCC 6 cut(s) 5, 145, 690, 723, 817, 837
BtgI CCRYGG 1 cut(s) 650
BtsCI GGATG 2 cut(s) 224, 628
BtsIMutI CAGTG 2 cut(s) 811, 831
Cac8I GCNNGC 1 cut(s) 444
CfoI GCGC 4 cut(s) 212, 402, 442, 520
Cfr10I RCCGGY 1 cut(s) 194
Cfr13I GGNCC 2 cut(s) 689, 836
Csp6I GTAC 2 cut(s) 222, 233
CviAII CATG 2 cut(s) 619, 651
CviQI GTAC 2 cut(s) 222, 233
DdeI CTNAG 2 cut(s) 261, 314
EaeI YGGCCR 1 cut(s) 721
Ecl136II GAGCTC 1 cut(s) 865
Eco130I CCWWGG 3 cut(s) 102, 650, 818
Eco24I GRGCYC 2 cut(s) 855, 867
Eco47III AGCGCT 1 cut(s) 519
Eco53kI GAGCTC 1 cut(s) 865
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 1 cut(s) 299
EcoICRI GAGCTC 1 cut(s) 865
EcoT14I CCWWGG 3 cut(s) 102, 650, 818
EcoT38I GRGCYC 2 cut(s) 855, 867
ErhI CCWWGG 3 cut(s) 102, 650, 818
FaeI CATG 2 cut(s) 622, 654
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 618, 650
FauI CCCGC 1 cut(s) 159
Fnu4HI GCNGC 6 cut(s) 35, 155, 426, 438, 516, 804
FokI GGATG 2 cut(s) 211, 635
FriOI GRGCYC 2 cut(s) 855, 867
Fsp4HI GCNGC 6 cut(s) 35, 155, 426, 438, 516, 804
FspBI CTAG 2 cut(s) 230, 656
GlaI GCGC 4 cut(s) 211, 401, 441, 519
GluI GCNGC 6 cut(s) 35, 155, 426, 438, 516, 804
HaeII RGCGCY 2 cut(s) 403, 521
HaeIII GGCC 6 cut(s) 5, 145, 690, 723, 817, 837
HapII CCGG 3 cut(s) 177, 195, 848
HhaI GCGC 4 cut(s) 212, 402, 442, 520
Hin1II CATG 2 cut(s) 622, 654
Hin6I GCGC 4 cut(s) 210, 400, 440, 518
HinP1I GCGC 4 cut(s) 210, 400, 440, 518
HinfI GANTC 6 cut(s) 21, 310, 490, 628, 638, 844
HpaII CCGG 3 cut(s) 177, 195, 848
HphI GGTGA 1 cut(s) 743
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 5 cut(s) 315, 495, 525, 553, 643
Hpy188III TCNNGA 2 cut(s) 301, 888
Hpy8I GTNNAC 1 cut(s) 258
Hpy99I CGWCG 2 cut(s) 362, 872
HpyAV CCTTC 3 cut(s) 264, 444, 457
HpyCH4V TGCA 3 cut(s) 125, 392, 711
HpyF10VI GCNNNNNNNGC 6 cut(s) 151, 173, 434, 443, 512, 834
HpyF3I CTNAG 2 cut(s) 261, 314
Hsp92II CATG 2 cut(s) 622, 654
HspAI GCGC 4 cut(s) 210, 400, 440, 518
LmnI GCTCC 3 cut(s) 274, 483, 862
Lsp1109I GCAGC 4 cut(s) 21, 141, 527, 815
LweI GCATC 2 cut(s) 190, 720
MaeI CTAG 2 cut(s) 230, 656
MaeIII GTNAC 1 cut(s) 809
MboII GAAGA 6 cut(s) 176, 179, 292, 303, 472, 581
MhlI GDGCHC 2 cut(s) 855, 867
MlsI TGGCCA 1 cut(s) 723
MluCI AATT 3 cut(s) 46, 90, 365
MluNI TGGCCA 1 cut(s) 723
MnlI CCTC 9 cut(s) 67, 376, 409, 746, 758, 839, 853, 865, 868
Mox20I TGGCCA 1 cut(s) 723
MscI TGGCCA 1 cut(s) 723
MseI TTAA 2 cut(s) 81, 159
MslI CAYNNNNRTG 1 cut(s) 263
Msp20I TGGCCA 1 cut(s) 723
MspA1I CMGCKG 2 cut(s) 154, 806
MspCI CTTAAG 1 cut(s) 158
MspI CCGG 3 cut(s) 177, 195, 848
MspR9I CCNGG 2 cut(s) 178, 849
Mva1269I GAATGC 1 cut(s) 830
MvnI CGCG 2 cut(s) 437, 606
MwoI GCNNNNNNNGC 6 cut(s) 151, 173, 434, 443, 512, 834
NciI CCSGG 2 cut(s) 178, 849
NcoI CCATGG 1 cut(s) 650
NlaIII CATG 2 cut(s) 622, 654
NlaIV GGNNCC 2 cut(s) 757, 838
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 1 cut(s) 809
PaeR7I CTCGAG 1 cut(s) 299
PcsI WCGNNNNNNNCGW 1 cut(s) 426
PctI GAATGC 1 cut(s) 830
PfeI GAWTC 6 cut(s) 21, 310, 490, 628, 638, 844
PflFI GACNNNGTC 1 cut(s) 323
PkrI GCNGC 6 cut(s) 36, 156, 427, 439, 517, 805
PsiI TTATAA 1 cut(s) 560
Psp124BI GAGCTC 1 cut(s) 867
PspN4I GGNNCC 2 cut(s) 757, 838
PspPI GGNCC 2 cut(s) 689, 836
PsyI GACNNNGTC 1 cut(s) 323
PvuII CAGCTG 1 cut(s) 806
RsaI GTAC 2 cut(s) 223, 234
RsaNI GTAC 2 cut(s) 222, 233
RseI CAYNNNNRTG 1 cut(s) 263
SacI GAGCTC 1 cut(s) 867
SaqAI TTAA 2 cut(s) 81, 159
SatI GCNGC 6 cut(s) 35, 155, 426, 438, 516, 804
Sau96I GGNCC 2 cut(s) 689, 836
ScrFI CCNGG 2 cut(s) 178, 849
SduI GDGCHC 2 cut(s) 855, 867
SfaNI GCATC 2 cut(s) 190, 720
Sfr274I CTCGAG 1 cut(s) 299
SlaI CTCGAG 1 cut(s) 299
SmiMI CAYNNNNRTG 1 cut(s) 263
SmlI CTYRAG 3 cut(s) 158, 299, 779
SmoI CTYRAG 3 cut(s) 158, 299, 779
Sse9I AATT 3 cut(s) 46, 90, 365
SsiI CCGC 3 cut(s) 152, 426, 437
SspMI CTAG 2 cut(s) 230, 656
SstI GAGCTC 1 cut(s) 867
StyD4I CCNGG 2 cut(s) 176, 847
StyI CCWWGG 3 cut(s) 102, 650, 818
TaqI TCGA 4 cut(s) 300, 327, 333, 870
TasI AATT 3 cut(s) 46, 90, 365
TatI WGTACW 1 cut(s) 221
TauI GCSGC 2 cut(s) 428, 440
TfiI GAWTC 6 cut(s) 21, 310, 490, 628, 638, 844
Tru1I TTAA 2 cut(s) 81, 159
Tru9I TTAA 2 cut(s) 81, 159
TscAI CASTG 2 cut(s) 818, 838
TseFI GTSAC 1 cut(s) 809
TseI GCWGC 4 cut(s) 34, 154, 515, 803
Tsp45I GTSAC 1 cut(s) 809
TspDTI ATGAA 1 cut(s) 606
TspGWI ACGGA 1 cut(s) 872
TspRI CASTG 2 cut(s) 818, 838
Tth111I GACNNNGTC 1 cut(s) 323
Vha464I CTTAAG 1 cut(s) 158
XcmI CCANNNNNNNNNTGG 1 cut(s) 683
XhoI CTCGAG 1 cut(s) 299
XspI CTAG 2 cut(s) 230, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.