Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000653

Physical Location & Seq

Genomic Coordinates Reverse (-)

65139752 .. 65141677

Gene Structure 1926 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60222

Sequence Viewer

CDS Protein Promoter (2k)

Length: 189 bp

ATGAATATTGGTCGGGAAGAATCTGAAAAGTATATCCATTTGCTGTATGCTATGCAAAAGCTTAGTCTCCAGATGAAGCTGCTGGGTTTTGGCAATTTCCCTGACAAGAGGACTCGTGGTTTTGAGCAAAGACTATATTTTTTGTGTGTATTTACACCTACATTCTTATTTTATTTTAGCCAAAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

62

Amino Acids

7.55

Weight (kDa)

9.58

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000653)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g02040 FvH4_6g20312 FvH4_7g29590 FvH4_7g29800 FvH4_7g30370 FvH4_7g30400 FvH4_7g30400 FvH4_7g30400 FvH4_7g30610
rosa_chinensis	RchiOBHm_Chr1g0362141 RchiOBHm_Chr1g0378631 RchiOBHm_Chr1g0378661 RchiOBHm_Chr1g0378841 RchiOBHm_Chr2g0149561
rosa_laevigata	RLG00000002620 RLG00000002622 RLG00000002629 RLG00000003999 RLG00000013563 RLG00000020408 RLG00000020410 RLG00000020421 RLG00000026416 RLG00000026417 RLG00000027654
rosa_multiflora	Rmu_sc0006867.1_g000011 Rmu_sc0006867.1_g000015 Rmu_sc0008712.1_g000008 Rmu_sc0014005.1_g000010
rosa_roxburghii	Rroxscaffold_3G00243880 Rroxscaffold_4G00280330 Rroxscaffold_4G00280340 Rroxscaffold_4G00280410 Rroxscaffold_7G00186160
rosa_rugosa	Rorug01G0302500 Rorug01G0302600 Rorug01G0410200 Rorug01G0410300 Rorug02G0404800.1 Rorug02G0404900 Rorug02G0412300 Rorug07G0158200.1
rosa_samantha	Rh1AG304700 Rh1AG431600 Rh1AG431700 Rh1AG432200 Rh1AG432300 Rh1BG263900 Rh1BG389900 Rh1BG390100 Rh1BG390900 Rh1BG424800 Rh1CG402300 Rh1CG403200 Rh1CG403300 Rh1CG403600 Rh1DG293900 Rh1DG420100 Rh1DG421100 Rh1DG421200 Rh1DG422000 Rh1DG457600 Rh2AG463400 Rh2BG476500 Rh2BG484800 Rh2CG450200 Rh2DG485200 Rh2DG494000 Rh6CG183000 Rh6DG174400 Rh7AG294000 Rh7CG314000 Rh7DG296800 Rh7DG306300
rosa_wichuraiana	Rw1G037740 Rw1G037820 Rw2G038540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	2 cut(s)	61, 79
AluI	AGCT	2 cut(s)	61, 79
Alw26I	GTCTC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	79
ArsI	GACNNNNNNTTYG	2 cut(s)	49, 81
BauI	CACGAG	1 cut(s)	114
BbvI	GCAGC	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	71
BisI	GCNGC	1 cut(s)	80
BlsI	GCNGC	1 cut(s)	81
BpmI	CTGGAG	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	66
BseYI	CCCAGC	1 cut(s)	82
BsmAI	GTCTC	1 cut(s)	71
BssSI	CACGAG	1 cut(s)	114
Bst2BI	CACGAG	1 cut(s)	114
BstDEI	CTNAG	1 cut(s)	62
BstMAI	GTCTC	1 cut(s)	71
BstV1I	GCAGC	1 cut(s)	66
CviJI	RGCY	3 cut(s)	61, 79, 180
CviKI_1	RGCY	3 cut(s)	61, 79, 180
DdeI	CTNAG	1 cut(s)	62
FaiI	YATR	4 cut(s)	33, 48, 53, 136
Fnu4HI	GCNGC	1 cut(s)	80
Fsp4HI	GCNGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	1 cut(s)	53
HindIII	AAGCTT	1 cut(s)	59
HinfI	GANTC	2 cut(s)	20, 112
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	14, 70
HpyCH4V	TGCA	1 cut(s)	55
HpyF3I	CTNAG	1 cut(s)	62
LpnPI	CCDG	3 cut(s)	68, 83, 114
Lsp1109I	GCAGC	1 cut(s)	66
MboII	GAAGA	1 cut(s)	29
MluCI	AATT	1 cut(s)	94
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	81
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	82
SatI	GCNGC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	106
SetI	ASST	3 cut(s)	63, 81, 160
SgeI	CNNG	7 cut(s)	26, 82, 95, 113, 118, 126, 128
Sse9I	AATT	1 cut(s)	94
SspI	AATATT	1 cut(s)	7
TasI	AATT	1 cut(s)	94
TfiI	GAWTC	1 cut(s)	20
TseI	GCWGC	1 cut(s)	79
TspDTI	ATGAA	2 cut(s)	17, 89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.