RLG00000002620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000653
Physical Location & Seq
Reverse (-)
37104933 .. 37105705
773 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002620

Sequence Viewer

Length: 702 bp
ATGGTAAGTACATCCCTAGTACGAAAGCACAGAGCTGCCGAGTTCACTAAGATGAGAAGGGAGCTGAAGAGACAAAGAAGAAAGCTCGAGATACTGAATCTAAGCGACAAAGTCGAAGTCGAATATATACCAAAGCAAAAAACCGACGAGAAATTATATTTTACGGACGACGAATATGAAAGTAGGCGCTTGATTATACCAGAGGACGAAGCCGCCGAGTTCGCGGCGCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCGAATCTGAGCAACAGAGCCGAAGTCGCGGCGCTTCGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACCTTATAATAAAAGAAGATGGAGAAGTTAGGGATTATGTATATGGCTGTGGTGTTTGTGGTAACATGGATGAGAATCACGATGATCAGGAGTGCCCATGGCTAGATAAACTCCCACCACACAAAACTGTTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGCAGCTGGTCACTGGCCTTGGGAATGCCTCACTGGCCCCAAGATTCTAGGGCTGACGGAGGAACTCGTCGAGGAGGTCATATCCTCTTGAACCATCCTGCAAGATTCCGGGGCTCATGGAGGAGGTCCGCTCCTCCTCCAAACCTAGCTTCCATCTGCTCAAATAGCAAATCAACGGAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.83

Weight (kDa)

9.3

Isoelectric Point (pI)

61.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 647
AccII CGCG 2 cut(s) 224, 302
AciI CCGC 4 cut(s) 213, 224, 302, 645
AcoI YGGCCR 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 2 cut(s) 10, 21
AgsI TTSAA 2 cut(s) 323, 607
AjuI GAANNNNNNNTTGG 2 cut(s) 649, 681
AluBI AGCT 7 cut(s) 35, 64, 85, 265, 336, 522, 665
AluI AGCT 7 cut(s) 35, 64, 85, 265, 336, 522, 665
Alw26I GTCTC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 4 cut(s) 475, 508, 531, 551
ApeKI GCWGC 2 cut(s) 35, 519
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspLEI GCGC 3 cut(s) 189, 229, 307
AspS9I GGNCC 3 cut(s) 476, 552, 642
AsuC2I CCSGG 1 cut(s) 626
AvaI CYCGRG 1 cut(s) 86
AvaII GGWCC 1 cut(s) 642
BaeGI GKGCMC 1 cut(s) 437
BalI TGGCCA 1 cut(s) 510
BanII GRGCYC 1 cut(s) 632
BbvI GCAGC 2 cut(s) 22, 531
BccI CCATC 4 cut(s) 237, 353, 618, 677
BclI TGATCA 1 cut(s) 424
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 4 cut(s) 17, 443, 564, 662
BfoI RGCGCY 2 cut(s) 190, 308
BglI GCCNNNNNGGC 2 cut(s) 516, 550
BisI GCNGC 5 cut(s) 36, 213, 225, 303, 520
BlsI GCNGC 5 cut(s) 37, 214, 226, 304, 521
Bme1390I CCNGG 1 cut(s) 626
Bme18I GGWCC 1 cut(s) 642
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 3 cut(s) 476, 552, 642
BmiI GGNNCC 1 cut(s) 554
BmrFI CCNGG 1 cut(s) 626
BmsI GCATC 1 cut(s) 507
BplI GAGNNNNNCTC 2 cut(s) 631, 663
BpuMI CCSGG 1 cut(s) 626
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 437, 534, 625
Bse1I ACTGG 2 cut(s) 534, 554
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 3 cut(s) 437, 534, 625
BseGI GGATG 3 cut(s) 11, 415, 610
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 1 cut(s) 272
BseNI ACTGG 2 cut(s) 534, 554
BseRI GAGGAG 4 cut(s) 603, 639, 642, 652
BseSI GKGCMC 1 cut(s) 437
BseXI GCAGC 2 cut(s) 22, 531
Bsh1236I CGCG 2 cut(s) 224, 302
BshFI GGCC 4 cut(s) 477, 510, 533, 553
BsiHKCI CYCGRG 1 cut(s) 86
BsiSI CCGG 1 cut(s) 625
BsmAI GTCTC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 546
BsnI GGCC 4 cut(s) 477, 510, 533, 553
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 437, 632
Bsp143I GATC 1 cut(s) 424
Bsp19I CCATGG 1 cut(s) 437
BspACI CCGC 4 cut(s) 213, 224, 302, 645
BspANI GGCC 4 cut(s) 477, 510, 533, 553
BspCNI CTCAG 1 cut(s) 273
BspFNI CGCG 2 cut(s) 224, 302
BspLI GGNNCC 1 cut(s) 554
BsrBI CCGCTC 1 cut(s) 647
BsrI ACTGG 2 cut(s) 534, 554
BssECI CCNNGG 3 cut(s) 437, 534, 625
BssMI GATC 1 cut(s) 424
BssT1I CCWWGG 2 cut(s) 437, 534
Bst4CI ACNGT 1 cut(s) 469
Bst6I CTCTTC 1 cut(s) 62
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 48, 101, 281
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 3 cut(s) 11, 415, 610
BstFNI CGCG 2 cut(s) 224, 302
BstH2I RGCGCY 2 cut(s) 190, 308
BstHHI GCGC 3 cut(s) 189, 229, 307
BstKTI GATC 1 cut(s) 427
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 1 cut(s) 424
BstMWI GCNNNNNNNGC 6 cut(s) 221, 230, 299, 516, 550, 681
BstSCI CCNGG 1 cut(s) 624
BstSLI GKGCMC 1 cut(s) 437
BstUI CGCG 2 cut(s) 224, 302
BstV1I GCAGC 2 cut(s) 22, 531
BsuRI GGCC 4 cut(s) 477, 510, 533, 553
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 3 cut(s) 11, 415, 610
BtsIMutI CAGTG 2 cut(s) 527, 547
Cac8I GCNNGC 1 cut(s) 231
CfoI GCGC 3 cut(s) 189, 229, 307
Cfr13I GGNCC 3 cut(s) 476, 552, 642
Csp6I GTAC 2 cut(s) 9, 20
CviAII CATG 3 cut(s) 406, 438, 633
CviQI GTAC 2 cut(s) 9, 20
DdeI CTNAG 3 cut(s) 48, 101, 281
DpnI GATC 1 cut(s) 426
DpnII GATC 1 cut(s) 424
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Eco130I CCWWGG 2 cut(s) 437, 534
Eco24I GRGCYC 1 cut(s) 632
Eco47I GGWCC 1 cut(s) 642
Eco57I CTGAAG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 86
EcoT14I CCWWGG 2 cut(s) 437, 534
EcoT38I GRGCYC 1 cut(s) 632
ErhI CCWWGG 2 cut(s) 437, 534
FaeI CATG 3 cut(s) 409, 441, 636
FatI CATG 3 cut(s) 405, 437, 632
FbaI TGATCA 1 cut(s) 424
Fnu4HI GCNGC 5 cut(s) 36, 213, 225, 303, 520
FokI GGATG 2 cut(s) 422, 597
FriOI GRGCYC 1 cut(s) 632
Fsp4HI GCNGC 5 cut(s) 36, 213, 225, 303, 520
FspBI CTAG 4 cut(s) 17, 443, 564, 662
GlaI GCGC 3 cut(s) 188, 228, 306
GluI GCNGC 5 cut(s) 36, 213, 225, 303, 520
HaeII RGCGCY 2 cut(s) 190, 308
HaeIII GGCC 4 cut(s) 477, 510, 533, 553
HapII CCGG 1 cut(s) 625
HhaI GCGC 3 cut(s) 189, 229, 307
Hin1II CATG 3 cut(s) 409, 441, 636
Hin6I GCGC 3 cut(s) 187, 227, 305
HinP1I GCGC 3 cut(s) 187, 227, 305
HinfI GANTC 5 cut(s) 97, 277, 415, 560, 621
HpaII CCGG 1 cut(s) 625
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 3 cut(s) 282, 312, 340
Hpy188III TCNNGA 4 cut(s) 88, 419, 428, 604
Hpy8I GTNNAC 1 cut(s) 45
Hpy99I CGWCG 3 cut(s) 149, 173, 588
HpyAV CCTTC 3 cut(s) 51, 231, 244
HpyCH4III ACNGT 1 cut(s) 469
HpyCH4V TGCA 2 cut(s) 498, 617
HpyF10VI GCNNNNNNNGC 6 cut(s) 221, 230, 299, 516, 550, 681
HpyF3I CTNAG 3 cut(s) 48, 101, 281
Hsp92II CATG 3 cut(s) 409, 441, 636
HspAI GCGC 3 cut(s) 187, 227, 305
Ksp22I TGATCA 1 cut(s) 424
Kzo9I GATC 1 cut(s) 424
LmnI GCTCC 3 cut(s) 61, 270, 652
LpnPI CCDG 9 cut(s) 213, 215, 413, 508, 515, 524, 535, 627, 638
Lsp1109I GCAGC 2 cut(s) 22, 531
LweI GCATC 1 cut(s) 507
MaeI CTAG 4 cut(s) 17, 443, 564, 662
MaeIII GTNAC 2 cut(s) 401, 525
MalI GATC 1 cut(s) 426
MbiI CCGCTC 1 cut(s) 647
MboI GATC 1 cut(s) 424
MboII GAAGA 4 cut(s) 79, 90, 259, 368
MhlI GDGCHC 2 cut(s) 437, 632
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 510
Mox20I TGGCCA 1 cut(s) 510
MscI TGGCCA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 50
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 1 cut(s) 625
MspR9I CCNGG 1 cut(s) 626
Mva1269I GAATGC 1 cut(s) 546
MvnI CGCG 2 cut(s) 224, 302
MwoI GCNNNNNNNGC 6 cut(s) 221, 230, 299, 516, 550, 681
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 1 cut(s) 437
NdeII GATC 1 cut(s) 424
NlaIII CATG 3 cut(s) 409, 441, 636
NlaIV GGNNCC 1 cut(s) 554
NmeAIII GCCGAG 2 cut(s) 64, 241
NmuCI GTSAC 1 cut(s) 525
PaeR7I CTCGAG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 546
PfeI GAWTC 5 cut(s) 97, 277, 415, 560, 621
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 5 cut(s) 37, 214, 226, 304, 521
PsiI TTATAA 1 cut(s) 347
PspN4I GGNNCC 1 cut(s) 554
PspPI GGNCC 3 cut(s) 476, 552, 642
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 522
RsaI GTAC 2 cut(s) 10, 21
RsaNI GTAC 2 cut(s) 9, 20
RseI CAYNNNNRTG 1 cut(s) 50
SatI GCNGC 5 cut(s) 36, 213, 225, 303, 520
Sau3AI GATC 1 cut(s) 424
Sau96I GGNCC 3 cut(s) 476, 552, 642
ScrFI CCNGG 1 cut(s) 626
SduI GDGCHC 2 cut(s) 437, 632
SfaNI GCATC 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 642
SlaI CTCGAG 1 cut(s) 86
SmiMI CAYNNNNRTG 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
Sse9I AATT 1 cut(s) 152
SsiI CCGC 4 cut(s) 213, 224, 302, 645
SspMI CTAG 4 cut(s) 17, 443, 564, 662
StyD4I CCNGG 1 cut(s) 624
StyI CCWWGG 2 cut(s) 437, 534
TaaI ACNGT 1 cut(s) 469
TaqI TCGA 4 cut(s) 87, 114, 120, 586
TasI AATT 1 cut(s) 152
TatI WGTACW 1 cut(s) 8
TauI GCSGC 3 cut(s) 215, 227, 305
TfiI GAWTC 5 cut(s) 97, 277, 415, 560, 621
TscAI CASTG 2 cut(s) 534, 554
TseFI GTSAC 1 cut(s) 525
TseI GCWGC 2 cut(s) 35, 519
Tsp45I GTSAC 1 cut(s) 525
TspDTI ATGAA 1 cut(s) 192
TspGWI ACGGA 2 cut(s) 179, 588
TspRI CASTG 2 cut(s) 534, 554
Tth111I GACNNNGTC 1 cut(s) 110
VpaK11BI GGWCC 1 cut(s) 642
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 4 cut(s) 17, 443, 564, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.