RLG00000003999

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000653
Physical Location & Seq
Reverse (-)
55138777 .. 55141944
3168 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003999

Sequence Viewer

Length: 465 bp
ATGGCTTCGACAAGGAGGAAGAGGACCAAGCAGGGGAGAAAGACGAGGTCTAGTGTTACCACCAAGAAAAAGGAACAAAAAGAAGTTGAGGCCTCGAAATTAGAATTTAAGCGTGAGGTTGCGAATCTAAATCTGGGCGACAAGAGGAAGACTCATGGTAGCAAGGGGCAAGAATCAGAGGGTTCAGGTGATGACTATTTGGCGTCATGTAGAAGCAAAGTAGCAGGTTATTCCGTTTGTGGCAAGTATGATCACCTTAATTTAACCTGCCCATTCCTAAAATATTTTCCTGAAGGCACTAAAATTGGCCATGACTTTGAGACAATGTGCCGGGGTTGTCACCGTATTGGAAAGTGGGAGGACTATGGAGATTGTCCTAGGCCTAAGGACGTCGTCTTTGAGAAACCTGAATACTTTGATGGGGATGGGATTTCCACAGAGTTTGAGGATGACGATGCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.54

Weight (kDa)

8.46

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 393
Acc36I ACCTGC 2 cut(s) 215, 275
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 1 cut(s) 104
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 2 cut(s) 203, 390
AfiI CCNNNNNNNGG 1 cut(s) 33
Alw26I GTCTC 1 cut(s) 314
AoxI GGCC 3 cut(s) 90, 307, 380
ApoI RAATTY 1 cut(s) 104
ArsI GACNNNNNNTTYG 2 cut(s) 380, 412
AspA2I CCTAGG 1 cut(s) 377
AspS9I GGNCC 1 cut(s) 24
AsuC2I CCSGG 1 cut(s) 332
AsuHPI GGTGA 3 cut(s) 200, 245, 332
AvaII GGWCC 1 cut(s) 24
AvrII CCTAGG 1 cut(s) 377
AxyI CCTNAGG 1 cut(s) 384
BalI TGGCCA 1 cut(s) 309
BbsI GAAGAC 1 cut(s) 155
BccI CCATC 2 cut(s) 413, 419
BclI TGATCA 1 cut(s) 250
BcnI CCSGG 1 cut(s) 332
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 2 cut(s) 51, 378
BfuAI ACCTGC 2 cut(s) 215, 275
BlnI CCTAGG 1 cut(s) 377
Bme1390I CCNGG 1 cut(s) 332
Bme18I GGWCC 1 cut(s) 24
BmgT120I GGNCC 1 cut(s) 24
BmrFI CCNGG 1 cut(s) 332
BmsI GCATC 1 cut(s) 445
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 136, 168
BpuMI CCSGG 1 cut(s) 332
BsaHI GRCGYC 2 cut(s) 203, 390
BsaJI CCNNGG 2 cut(s) 331, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 33
Bse21I CCTNAGG 1 cut(s) 384
BseDI CCNNGG 2 cut(s) 331, 377
BseGI GGATG 2 cut(s) 430, 454
BseLI CCNNNNNNNGG 1 cut(s) 33
BshFI GGCC 3 cut(s) 92, 309, 382
BsiSI CCGG 1 cut(s) 331
BslI CCNNNNNNNGG 1 cut(s) 33
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 3 cut(s) 92, 309, 382
Bsp143I GATC 1 cut(s) 250
BspANI GGCC 3 cut(s) 92, 309, 382
BspMI ACCTGC 2 cut(s) 215, 275
BssECI CCNNGG 2 cut(s) 331, 377
BssMI GATC 1 cut(s) 250
BssNI GRCGYC 2 cut(s) 203, 390
BssT1I CCWWGG 1 cut(s) 377
Bst4CI ACNGT 1 cut(s) 344
Bst6I CTCTTC 1 cut(s) 14
BstACI GRCGYC 2 cut(s) 203, 390
BstDEI CTNAG 1 cut(s) 384
BstF5I GGATG 2 cut(s) 430, 454
BstKTI GATC 1 cut(s) 253
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 1 cut(s) 250
BstSCI CCNGG 1 cut(s) 330
BstV2I GAAGAC 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 384
BsuRI GGCC 3 cut(s) 92, 309, 382
BtsCI GGATG 2 cut(s) 430, 454
BveI ACCTGC 2 cut(s) 215, 275
Cfr13I GGNCC 1 cut(s) 24
CseI GACGC 1 cut(s) 192
CspCI CAANNNNNGTGG 2 cut(s) 424, 459
CviAII CATG 3 cut(s) 155, 207, 311
CviJI RGCY 4 cut(s) 5, 92, 309, 382
CviKI_1 RGCY 4 cut(s) 5, 92, 309, 382
DdeI CTNAG 1 cut(s) 384
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 377
Eco147I AGGCCT 2 cut(s) 92, 382
Eco47I GGWCC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 384
EcoT14I CCWWGG 1 cut(s) 377
EcoT22I ATGCAT 1 cut(s) 460
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 3 cut(s) 158, 210, 314
FaiI YATR 5 cut(s) 156, 208, 249, 312, 366
FatI CATG 3 cut(s) 154, 206, 310
FbaI TGATCA 1 cut(s) 250
FokI GGATG 2 cut(s) 437, 461
FspBI CTAG 2 cut(s) 51, 378
HaeIII GGCC 3 cut(s) 92, 309, 382
HapII CCGG 1 cut(s) 331
HgaI GACGC 1 cut(s) 192
Hin1I GRCGYC 2 cut(s) 203, 390
Hin1II CATG 3 cut(s) 158, 210, 314
HinfI GANTC 3 cut(s) 124, 151, 173
HpaII CCGG 1 cut(s) 331
HphI GGTGA 3 cut(s) 200, 245, 332
Hpy188I TCNGA 1 cut(s) 178
Hpy188III TCNNGA 1 cut(s) 290
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 287
HpyCH4III ACNGT 1 cut(s) 344
HpyCH4IV ACGT 1 cut(s) 390
HpyCH4V TGCA 1 cut(s) 458
HpyF3I CTNAG 1 cut(s) 384
HpySE526I ACGT 1 cut(s) 390
Hsp92I GRCGYC 2 cut(s) 203, 390
Hsp92II CATG 3 cut(s) 158, 210, 314
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LpnPI CCDG 8 cut(s) 17, 119, 171, 210, 280, 303, 344, 420
LweI GCATC 1 cut(s) 445
MaeI CTAG 2 cut(s) 51, 378
MaeII ACGT 1 cut(s) 390
MaeIII GTNAC 2 cut(s) 55, 338
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 2 cut(s) 31, 160
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 4 cut(s) 98, 104, 259, 303
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 1 cut(s) 145
Mox20I TGGCCA 1 cut(s) 309
Mph1103I ATGCAT 1 cut(s) 460
MscI TGGCCA 1 cut(s) 309
MseI TTAA 3 cut(s) 108, 258, 263
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 1 cut(s) 331
MspR9I CCNGG 1 cut(s) 332
NciI CCSGG 1 cut(s) 332
NdeII GATC 1 cut(s) 250
NlaIII CATG 3 cut(s) 158, 210, 314
NmuCI GTSAC 1 cut(s) 338
NsiI ATGCAT 1 cut(s) 460
PceI AGGCCT 2 cut(s) 92, 382
PfeI GAWTC 2 cut(s) 124, 173
PflFI GACNNNGTC 2 cut(s) 46, 392
PleI GAGTC 1 cut(s) 145
PpsI GAGTC 1 cut(s) 145
PspPI GGNCC 1 cut(s) 24
PsyI GACNNNGTC 2 cut(s) 46, 392
SaqAI TTAA 3 cut(s) 108, 258, 263
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 24
SchI GAGTC 1 cut(s) 145
ScrFI CCNGG 1 cut(s) 332
SetI ASST 8 cut(s) 50, 120, 190, 229, 258, 269, 393, 409
SfaNI GCATC 1 cut(s) 445
SinI GGWCC 1 cut(s) 24
Sse9I AATT 4 cut(s) 98, 104, 259, 303
SseBI AGGCCT 2 cut(s) 92, 382
SspI AATATT 1 cut(s) 284
SspMI CTAG 2 cut(s) 51, 378
StuI AGGCCT 2 cut(s) 92, 382
StyD4I CCNGG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 344
TaiI ACGT 1 cut(s) 393
TaqI TCGA 2 cut(s) 8, 95
TasI AATT 4 cut(s) 98, 104, 259, 303
TfiI GAWTC 2 cut(s) 124, 173
Tru1I TTAA 3 cut(s) 108, 258, 263
Tru9I TTAA 3 cut(s) 108, 258, 263
TseFI GTSAC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 223
Tth111I GACNNNGTC 2 cut(s) 46, 392
VpaK11BI GGWCC 1 cut(s) 24
XapI RAATTY 1 cut(s) 104
XmaJI CCTAGG 1 cut(s) 377
XspI CTAG 2 cut(s) 51, 378
ZraI GACGTC 1 cut(s) 391
Zsp2I ATGCAT 1 cut(s) 460
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.