Rroxscaffold_3G00243880

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000653
Physical Location & Seq
Reverse (-)
36354606 .. 36355325
720 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00243880.1

Sequence Viewer

Length: 720 bp
ATGGTAGGTACATCCCTAGTACGAAAGCACAGAGCTGCCGAGTTCGCTAAGATGAGAAGGGAGCTGAAGAGACAAAGAAGAAAGCTCACTAAGATGAGAAGGGAGCTGAAGAGACTAAGAAGAAAGCTCGAGATAGATTCAGTGAACGACAAAGTCGAAGTCGAATATATACCAAAGCAAAAAACCGACGAGAAATTATATTTTACGGACGAGGAATATGCAAGTAGGCGCTTGATTATACCAGAGGACGAAGCGGCCGAGTTCGAGGCGCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCGAATCTGAACAACAAAGCCGAAGTCGCGGAGCTTCGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACCTTATAATAAAAGAAGACGGAGAAGTAAAAGATTATGAATATGGCTGTGGCGTTTGTGCTAACATGGATGAGAATCACTATGATTCGGACTGCCCATGGCTAGATAAACTGCCACCAGACCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGTGAGCTGTGCTGTTCCAAGAGAGGTTCCAAGCGAGGATATGCTGTTCTCAAGTCCTGTATATTTTGTCAGGCAGCTGGTCACTGGCCTTGGGAATGCCTCACTGGCCCCAAGATTCCGGGGCTCACGGAGGAGCTCGTCGAGGAGGTCATATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.87

Weight (kDa)

8.82

Isoelectric Point (pI)

60.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 389
AccII CGCG 1 cut(s) 344
AciI CCGC 2 cut(s) 254, 344
AcoI YGGCCR 2 cut(s) 255, 550
AcuI CTGAAG 2 cut(s) 86, 128
AfaI GTAC 2 cut(s) 10, 21
AgsI TTSAA 1 cut(s) 365
AloI GAACNNNNNNTCC 2 cut(s) 588, 620
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 2 cut(s) 64, 106
Ama87I CYCGRG 1 cut(s) 128
AoxI GGCC 5 cut(s) 255, 517, 550, 644, 664
ApeKI GCWGC 2 cut(s) 35, 632
ArsI GACNNNNNNTTYG 4 cut(s) 144, 176, 324, 356
AspLEI GCGC 2 cut(s) 231, 271
AspS9I GGNCC 2 cut(s) 518, 665
AsuC2I CCSGG 1 cut(s) 678
AsuHPI GGTGA 1 cut(s) 572
AvaI CYCGRG 1 cut(s) 128
BalI TGGCCA 1 cut(s) 552
BanII GRGCYC 2 cut(s) 684, 696
BbsI GAAGAC 1 cut(s) 405
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 2 cut(s) 22, 644
BccI CCATC 1 cut(s) 279
BcgI CGANNNNNNTGC 2 cut(s) 200, 234
BcnI CCSGG 1 cut(s) 678
BcoDI GTCTC 2 cut(s) 64, 106
BfaI CTAG 2 cut(s) 17, 485
BfoI RGCGCY 1 cut(s) 232
BglI GCCNNNNNGGC 1 cut(s) 663
BisI GCNGC 3 cut(s) 36, 255, 633
BlsI GCNGC 3 cut(s) 37, 256, 634
Bme1390I CCNGG 1 cut(s) 678
BmeT110I CYCGRG 1 cut(s) 128
BmgT120I GGNCC 2 cut(s) 518, 665
BmiI GGNNCC 2 cut(s) 586, 667
BmrFI CCNGG 1 cut(s) 678
BmsI GCATC 1 cut(s) 549
BpiI GAAGAC 1 cut(s) 405
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 678
BsaBI GATNNNNATC 1 cut(s) 456
BsaJI CCNNGG 3 cut(s) 479, 647, 677
Bse1I ACTGG 2 cut(s) 647, 667
Bse8I GATNNNNATC 1 cut(s) 456
BseDI CCNNGG 3 cut(s) 479, 647, 677
BseGI GGATG 2 cut(s) 11, 457
BseJI GATNNNNATC 1 cut(s) 456
BseNI ACTGG 2 cut(s) 647, 667
BseRI GAGGAG 2 cut(s) 704, 716
BseX3I CGGCCG 1 cut(s) 255
BseXI GCAGC 2 cut(s) 22, 644
Bsh1236I CGCG 1 cut(s) 344
Bsh1285I CGRYCG 1 cut(s) 258
BshFI GGCC 5 cut(s) 257, 519, 552, 646, 666
BsiEI CGRYCG 1 cut(s) 258
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 128
BsiSI CCGG 1 cut(s) 677
BsmAI GTCTC 2 cut(s) 64, 106
BsmI GAATGC 1 cut(s) 659
BsnI GGCC 5 cut(s) 257, 519, 552, 646, 666
BsoBI CYCGRG 1 cut(s) 128
Bsp1286I GDGCHC 2 cut(s) 684, 696
Bsp19I CCATGG 1 cut(s) 479
BspACI CCGC 2 cut(s) 254, 344
BspANI GGCC 5 cut(s) 257, 519, 552, 646, 666
BspFNI CGCG 1 cut(s) 344
BspLI GGNNCC 2 cut(s) 586, 667
BsrI ACTGG 2 cut(s) 647, 667
BssECI CCNNGG 3 cut(s) 479, 647, 677
BssT1I CCWWGG 2 cut(s) 479, 647
Bst6I CTCTTC 2 cut(s) 62, 104
BstC8I GCNNGC 1 cut(s) 273
BstDEI CTNAG 3 cut(s) 48, 90, 116
BstDSI CCRYGG 1 cut(s) 479
BstF5I GGATG 2 cut(s) 11, 457
BstFNI CGCG 1 cut(s) 344
BstH2I RGCGCY 1 cut(s) 232
BstHHI GCGC 2 cut(s) 231, 271
BstMAI GTCTC 2 cut(s) 64, 106
BstMCI CGRYCG 1 cut(s) 258
BstMWI GCNNNNNNNGC 3 cut(s) 44, 341, 663
BstSCI CCNGG 1 cut(s) 676
BstUI CGCG 1 cut(s) 344
BstV1I GCAGC 2 cut(s) 22, 644
BstV2I GAAGAC 1 cut(s) 405
BstZI CGGCCG 1 cut(s) 255
BsuRI GGCC 5 cut(s) 257, 519, 552, 646, 666
BtgI CCRYGG 1 cut(s) 479
BtsCI GGATG 2 cut(s) 11, 457
BtsIMutI CAGTG 3 cut(s) 147, 640, 660
Cac8I GCNNGC 1 cut(s) 273
CfoI GCGC 2 cut(s) 231, 271
Cfr13I GGNCC 2 cut(s) 518, 665
Csp6I GTAC 2 cut(s) 9, 20
CviAII CATG 2 cut(s) 448, 480
CviQI GTAC 2 cut(s) 9, 20
DdeI CTNAG 3 cut(s) 48, 90, 116
EaeI YGGCCR 2 cut(s) 255, 550
EagI CGGCCG 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 62, 104
EarI CTCTTC 2 cut(s) 62, 104
Ecl136II GAGCTC 1 cut(s) 694
EclXI CGGCCG 1 cut(s) 255
Eco130I CCWWGG 2 cut(s) 479, 647
Eco24I GRGCYC 2 cut(s) 684, 696
Eco52I CGGCCG 1 cut(s) 255
Eco53kI GAGCTC 1 cut(s) 694
Eco57I CTGAAG 2 cut(s) 86, 128
Eco88I CYCGRG 1 cut(s) 128
EcoICRI GAGCTC 1 cut(s) 694
EcoT14I CCWWGG 2 cut(s) 479, 647
EcoT38I GRGCYC 2 cut(s) 684, 696
ErhI CCWWGG 2 cut(s) 479, 647
FaeI CATG 2 cut(s) 451, 483
FatI CATG 2 cut(s) 447, 479
Fnu4HI GCNGC 3 cut(s) 36, 255, 633
FokI GGATG 1 cut(s) 464
FriOI GRGCYC 2 cut(s) 684, 696
Fsp4HI GCNGC 3 cut(s) 36, 255, 633
FspBI CTAG 2 cut(s) 17, 485
GlaI GCGC 2 cut(s) 230, 270
GluI GCNGC 3 cut(s) 36, 255, 633
HaeII RGCGCY 1 cut(s) 232
HaeIII GGCC 5 cut(s) 257, 519, 552, 646, 666
HapII CCGG 1 cut(s) 677
HhaI GCGC 2 cut(s) 231, 271
Hin1II CATG 2 cut(s) 451, 483
Hin6I GCGC 2 cut(s) 229, 269
HinP1I GCGC 2 cut(s) 229, 269
HinfI GANTC 5 cut(s) 137, 319, 457, 467, 673
HpaII CCGG 1 cut(s) 677
HphI GGTGA 1 cut(s) 572
Hpy166II GTNNAC 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 324, 354, 382, 472
Hpy188III TCNNGA 2 cut(s) 130, 717
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 2 cut(s) 191, 701
HpyAV CCTTC 4 cut(s) 51, 93, 273, 286
HpyCH4V TGCA 2 cut(s) 221, 540
HpyF10VI GCNNNNNNNGC 3 cut(s) 44, 341, 663
HpyF3I CTNAG 3 cut(s) 48, 90, 116
Hsp92II CATG 2 cut(s) 451, 483
HspAI GCGC 2 cut(s) 229, 269
LmnI GCTCC 5 cut(s) 61, 103, 312, 346, 691
Lsp1109I GCAGC 2 cut(s) 22, 644
LweI GCATC 1 cut(s) 549
MaeI CTAG 2 cut(s) 17, 485
MaeIII GTNAC 1 cut(s) 638
MboII GAAGA 6 cut(s) 79, 90, 121, 132, 301, 410
MhlI GDGCHC 2 cut(s) 684, 696
MlsI TGGCCA 1 cut(s) 552
MluCI AATT 1 cut(s) 194
MluNI TGGCCA 1 cut(s) 552
MnlI CCTC 9 cut(s) 205, 238, 259, 575, 587, 668, 682, 694, 697
Mox20I TGGCCA 1 cut(s) 552
MscI TGGCCA 1 cut(s) 552
MslI CAYNNNNRTG 1 cut(s) 92
Msp20I TGGCCA 1 cut(s) 552
MspA1I CMGCKG 1 cut(s) 635
MspI CCGG 1 cut(s) 677
MspR9I CCNGG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 659
MvnI CGCG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 44, 341, 663
NciI CCSGG 1 cut(s) 678
NcoI CCATGG 1 cut(s) 479
NlaIII CATG 2 cut(s) 451, 483
NlaIV GGNNCC 2 cut(s) 586, 667
NmeAIII GCCGAG 2 cut(s) 64, 283
NmuCI GTSAC 1 cut(s) 638
PaeR7I CTCGAG 1 cut(s) 128
PcsI WCGNNNNNNNCGW 2 cut(s) 153, 255
PctI GAATGC 1 cut(s) 659
PfeI GAWTC 5 cut(s) 137, 319, 457, 467, 673
PflFI GACNNNGTC 1 cut(s) 152
PkrI GCNGC 3 cut(s) 37, 256, 634
PsiI TTATAA 1 cut(s) 389
Psp124BI GAGCTC 1 cut(s) 696
PspN4I GGNNCC 2 cut(s) 586, 667
PspPI GGNCC 2 cut(s) 518, 665
PsyI GACNNNGTC 1 cut(s) 152
PvuII CAGCTG 1 cut(s) 635
RsaI GTAC 2 cut(s) 10, 21
RsaNI GTAC 2 cut(s) 9, 20
RseI CAYNNNNRTG 1 cut(s) 92
SacI GAGCTC 1 cut(s) 696
SatI GCNGC 3 cut(s) 36, 255, 633
Sau96I GGNCC 2 cut(s) 518, 665
ScrFI CCNGG 1 cut(s) 678
SduI GDGCHC 2 cut(s) 684, 696
SfaNI GCATC 1 cut(s) 549
Sfr274I CTCGAG 1 cut(s) 128
SlaI CTCGAG 1 cut(s) 128
SmiMI CAYNNNNRTG 1 cut(s) 92
SmlI CTYRAG 2 cut(s) 128, 608
SmoI CTYRAG 2 cut(s) 128, 608
Sse9I AATT 1 cut(s) 194
SsiI CCGC 2 cut(s) 254, 344
SspMI CTAG 2 cut(s) 17, 485
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 1 cut(s) 676
StyI CCWWGG 2 cut(s) 479, 647
TaqI TCGA 5 cut(s) 129, 156, 162, 264, 699
TasI AATT 1 cut(s) 194
TauI GCSGC 1 cut(s) 257
TfiI GAWTC 5 cut(s) 137, 319, 457, 467, 673
TscAI CASTG 3 cut(s) 147, 647, 667
TseFI GTSAC 1 cut(s) 638
TseI GCWGC 2 cut(s) 35, 632
Tsp45I GTSAC 1 cut(s) 638
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 3 cut(s) 221, 417, 701
TspRI CASTG 3 cut(s) 147, 647, 667
Tth111I GACNNNGTC 1 cut(s) 152
XcmI CCANNNNNNNNNTGG 1 cut(s) 512
XhoI CTCGAG 1 cut(s) 128
XspI CTAG 2 cut(s) 17, 485
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.