Rh1DG457600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000653
Physical Location & Seq
Reverse (-)
66247645 .. 66248411
767 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG457600.1

Sequence Viewer

Length: 198 bp
ATGAGGCTCTTGACTATACCAAAGCACAGAGTCGCCCAGCATGCGGCTCAGATGAGAAGGAACTGGAAGAAAGAATACAGAAAGCTTGACATACCGGATCTGAGGGACGCAGCCGAAGTTGCGGAGCTGAGGAAGAGGCTTCAAAGGAAGGCAAGCTCTGACCTTGAAATAAAAGAAGATGGAGAAGTAAGAGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.78

Weight (kDa)

9.98

Isoelectric Point (pI)

33.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 44, 122
AclWI GGATC 1 cut(s) 105
AfiI CCNNNNNNNGG 1 cut(s) 43
AgsI TTSAA 2 cut(s) 143, 167
AluBI AGCT 3 cut(s) 85, 127, 156
AluI AGCT 3 cut(s) 85, 127, 156
AlwI GGATC 1 cut(s) 105
ApeKI GCWGC 1 cut(s) 110
BarI GAAGNNNNNNTAC 2 cut(s) 59, 91
BbvCI CCTCAGC 1 cut(s) 128
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 173
BisI GCNGC 2 cut(s) 45, 111
BlsI GCNGC 2 cut(s) 46, 112
Bpu10I CCTNAGC 1 cut(s) 128
BsaWI WCCGGW 1 cut(s) 94
Bsc4I CCNNNNNNNGG 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 68
BseLI CCNNNNNNNGG 1 cut(s) 43
BseMII CTCAG 3 cut(s) 62, 92, 119
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 122
BseYI CCCAGC 1 cut(s) 36
BsiSI CCGG 1 cut(s) 95
BslFI GGGAC 1 cut(s) 119
BslI CCNNNNNNNGG 1 cut(s) 43
BsmFI GGGAC 1 cut(s) 119
Bsp143I GATC 1 cut(s) 97
BspACI CCGC 2 cut(s) 44, 122
BspCNI CTCAG 3 cut(s) 61, 93, 120
BspPI GGATC 1 cut(s) 105
BsrI ACTGG 1 cut(s) 68
BssMI GATC 1 cut(s) 97
Bst6I CTCTTC 1 cut(s) 128
BstC8I GCNNGC 2 cut(s) 42, 154
BstDEI CTNAG 3 cut(s) 48, 101, 128
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMWI GCNNNNNNNGC 2 cut(s) 41, 119
BstNSI RCATGY 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 97
BstYI RGATCY 1 cut(s) 97
Cac8I GCNNGC 2 cut(s) 42, 154
CseI GACGC 1 cut(s) 116
CviAII CATG 1 cut(s) 41
CviJI RGCY 7 cut(s) 7, 47, 85, 113, 127, 139, 156
CviKI_1 RGCY 7 cut(s) 7, 47, 85, 113, 127, 139, 156
DdeI CTNAG 3 cut(s) 48, 101, 128
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
FaeI CATG 1 cut(s) 44
FaiI YATR 3 cut(s) 17, 42, 92
FaqI GGGAC 1 cut(s) 119
FatI CATG 1 cut(s) 40
Fnu4HI GCNGC 2 cut(s) 45, 111
Fsp4HI GCNGC 2 cut(s) 45, 111
GluI GCNGC 2 cut(s) 45, 111
GsaI CCCAGC 1 cut(s) 40
HapII CCGG 1 cut(s) 95
HgaI GACGC 1 cut(s) 116
Hin1II CATG 1 cut(s) 44
HindIII AAGCTT 1 cut(s) 83
HinfI GANTC 1 cut(s) 30
HpaII CCGG 1 cut(s) 95
Hpy188I TCNGA 3 cut(s) 51, 102, 160
Hpy188III TCNNGA 1 cut(s) 10
HpyAV CCTTC 2 cut(s) 51, 142
HpyF10VI GCNNNNNNNGC 2 cut(s) 41, 119
HpyF3I CTNAG 3 cut(s) 48, 101, 128
Hsp92II CATG 1 cut(s) 44
Kzo9I GATC 1 cut(s) 97
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 49, 50, 108
Lsp1109I GCAGC 1 cut(s) 122
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 3 cut(s) 79, 145, 188
MflI RGATCY 1 cut(s) 97
MlyI GAGTC 1 cut(s) 39
MnlI CCTC 3 cut(s) 96, 123, 129
MseI TTAA 1 cut(s) 196
MspI CCGG 1 cut(s) 95
MwoI GCNNNNNNNGC 2 cut(s) 41, 119
NdeII GATC 1 cut(s) 97
NlaIII CATG 1 cut(s) 44
NspI RCATGY 1 cut(s) 44
PaeI GCATGC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 46, 112
PleI GAGTC 1 cut(s) 38
PpsI GAGTC 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 36
PsuI RGATCY 1 cut(s) 97
SaqAI TTAA 1 cut(s) 196
SatI GCNGC 2 cut(s) 45, 111
Sau3AI GATC 1 cut(s) 97
SchI GAGTC 1 cut(s) 39
SetI ASST 4 cut(s) 87, 129, 158, 165
SgeI CNNG 8 cut(s) 22, 49, 53, 76, 98, 107, 165, 176
SphI GCATGC 1 cut(s) 44
SsiI CCGC 2 cut(s) 44, 122
TauI GCSGC 1 cut(s) 47
Tru1I TTAA 1 cut(s) 196
Tru9I TTAA 1 cut(s) 196
TseI GCWGC 1 cut(s) 110
XceI RCATGY 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.