RLG00000020410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000653
Physical Location & Seq
Reverse (-)
64734973 .. 64736396
1424 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020410

Sequence Viewer

Length: 531 bp
ATGTTTAAAATGATTTGCATGTTCCTCTTGAGGCTTGAGTTCATGAGGCTGTATGTACTTGATGATATTCTAGGTAACAAGGGGAAAGAATCAAAGGATCATCTAAGAACTGCCCATGATGACTTTTTGGGCATAAATATTCCAGTGTCAGGTAGAAGGAAATTTGCGGGTTGTGCCTGTTGTGGCGAGTATGATCACCTTAATGTAACCTACCCATTCCTAAAATATATTCCTGAAGGCGCTAAAATTGGCTGTTGCTTTGAGACAATGTGCCGGGGTTGTCACCGTATTGGAAAGGTGTGCTGTGTTAAGAGGGGGAAGTCTGTGGGAGGATTTCCTATGCTGAAGAGGTGTGCTCATTGTTTATGTATTGGTCACTGGGAGTGGGAGGACTGTGAAGATTGTCCTAGACCCAAGGACGTCGTCTATGAGAAACCTGAATACTTAGATGGGTATGGGATTTCCTCAGAGTCTGAGGATGAGGATGAGGATGCATTTCGACCCCGTAATCGTGCTCCATGGGGACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

20.22

Weight (kDa)

6.58

Isoelectric Point (pI)

40.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 423
AciI CCGC 1 cut(s) 167
AclWI GGATC 1 cut(s) 105
AcsI RAATTY 1 cut(s) 161
AcuI CTGAAG 2 cut(s) 255, 365
AcyI GRCGYC 1 cut(s) 420
AfaI GTAC 1 cut(s) 57
AfiI CCNNNNNNNGG 1 cut(s) 149
Alw21I GWGCWC 2 cut(s) 358, 517
Alw26I GTCTC 1 cut(s) 257
AlwI GGATC 1 cut(s) 105
AlwNI CAGNNNCTG 1 cut(s) 473
ApoI RAATTY 1 cut(s) 161
AspLEI GCGC 1 cut(s) 242
AsuC2I CCSGG 1 cut(s) 275
AsuHPI GGTGA 2 cut(s) 188, 275
Bbv12I GWGCWC 2 cut(s) 358, 517
BccI CCATC 1 cut(s) 443
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 257
BfaI CTAG 2 cut(s) 71, 408
BfoI RGCGCY 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 275
BmrFI CCNGG 1 cut(s) 275
BmrI ACTGGG 1 cut(s) 388
BmsI GCATC 1 cut(s) 481
BmuI ACTGGG 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 340, 372
BpuEI CTTGAG 2 cut(s) 49, 56
BpuMI CCSGG 1 cut(s) 275
BsaHI GRCGYC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 274, 414, 518
Bsc4I CCNNNNNNNGG 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 143, 383
BseDI CCNNGG 3 cut(s) 274, 414, 518
BseGI GGATG 3 cut(s) 484, 490, 496
BseLI CCNNNNNNNGG 1 cut(s) 149
BseMII CTCAG 2 cut(s) 465, 480
BseNI ACTGG 2 cut(s) 143, 383
BsiHKAI GWGCWC 2 cut(s) 358, 517
BsiSI CCGG 1 cut(s) 274
BslI CCNNNNNNNGG 1 cut(s) 149
BsmAI GTCTC 1 cut(s) 257
Bsp1286I GDGCHC 2 cut(s) 358, 517
Bsp143I GATC 2 cut(s) 97, 193
Bsp19I CCATGG 1 cut(s) 518
BspACI CCGC 1 cut(s) 167
BspCNI CTCAG 2 cut(s) 466, 479
BspHI TCATGA 1 cut(s) 42
BspPI GGATC 1 cut(s) 105
BsrI ACTGG 2 cut(s) 143, 383
BssECI CCNNGG 3 cut(s) 274, 414, 518
BssMI GATC 2 cut(s) 97, 193
BssNI GRCGYC 1 cut(s) 420
BssT1I CCWWGG 2 cut(s) 414, 518
Bst4CI ACNGT 2 cut(s) 287, 395
Bst6I CTCTTC 1 cut(s) 341
BstACI GRCGYC 1 cut(s) 420
BstDEI CTNAG 4 cut(s) 104, 445, 466, 474
BstDSI CCRYGG 1 cut(s) 518
BstF5I GGATG 3 cut(s) 484, 490, 496
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 1 cut(s) 242
BstKTI GATC 2 cut(s) 100, 196
BstMAI GTCTC 1 cut(s) 257
BstMBI GATC 2 cut(s) 97, 193
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNSI RCATGY 1 cut(s) 22
BstSCI CCNGG 1 cut(s) 273
BtgI CCRYGG 1 cut(s) 518
BtsCI GGATG 3 cut(s) 484, 490, 496
BtsIMutI CAGTG 2 cut(s) 150, 376
CaiI CAGNNNCTG 1 cut(s) 473
CciI TCATGA 1 cut(s) 42
CfoI GCGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 56
CviAII CATG 4 cut(s) 19, 43, 116, 519
CviJI RGCY 3 cut(s) 34, 49, 252
CviKI_1 RGCY 3 cut(s) 34, 49, 252
CviQI GTAC 1 cut(s) 56
DdeI CTNAG 4 cut(s) 104, 445, 466, 474
DpnI GATC 2 cut(s) 99, 195
DpnII GATC 2 cut(s) 97, 193
DraI TTTAAA 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco130I CCWWGG 2 cut(s) 414, 518
Eco57I CTGAAG 2 cut(s) 255, 365
EcoT14I CCWWGG 2 cut(s) 414, 518
EcoT22I ATGCAT 1 cut(s) 496
ErhI CCWWGG 2 cut(s) 414, 518
FaeI CATG 4 cut(s) 22, 46, 119, 522
FatI CATG 4 cut(s) 18, 42, 115, 518
FauI CCCGC 1 cut(s) 160
FbaI TGATCA 1 cut(s) 193
FokI GGATG 3 cut(s) 491, 497, 503
FspBI CTAG 2 cut(s) 71, 408
GlaI GCGC 1 cut(s) 241
HaeII RGCGCY 1 cut(s) 243
HapII CCGG 1 cut(s) 274
HhaI GCGC 1 cut(s) 242
Hin1I GRCGYC 1 cut(s) 420
Hin1II CATG 4 cut(s) 22, 46, 119, 522
Hin6I GCGC 1 cut(s) 240
HinP1I GCGC 1 cut(s) 240
HinfI GANTC 2 cut(s) 89, 470
HpaII CCGG 1 cut(s) 274
HphI GGTGA 2 cut(s) 188, 275
Hpy188I TCNGA 2 cut(s) 469, 475
Hpy188III TCNNGA 3 cut(s) 28, 43, 233
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 150, 230
HpyCH4III ACNGT 2 cut(s) 287, 395
HpyCH4IV ACGT 1 cut(s) 420
HpyCH4V TGCA 2 cut(s) 18, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 4 cut(s) 104, 445, 466, 474
HpySE526I ACGT 1 cut(s) 420
Hsp92I GRCGYC 1 cut(s) 420
Hsp92II CATG 4 cut(s) 22, 46, 119, 522
HspAI GCGC 1 cut(s) 240
Ksp22I TGATCA 1 cut(s) 193
Kzo9I GATC 2 cut(s) 97, 193
LmnI GCTCC 1 cut(s) 520
LpnPI CCDG 7 cut(s) 135, 156, 190, 246, 287, 364, 450
LweI GCATC 1 cut(s) 481
MaeI CTAG 2 cut(s) 71, 408
MaeII ACGT 1 cut(s) 420
MaeIII GTNAC 4 cut(s) 74, 205, 281, 374
MalI GATC 2 cut(s) 99, 195
MboI GATC 2 cut(s) 97, 193
MboII GAAGA 2 cut(s) 358, 410
MhlI GDGCHC 2 cut(s) 358, 517
MluCI AATT 2 cut(s) 161, 246
MlyI GAGTC 1 cut(s) 479
Mph1103I ATGCAT 1 cut(s) 496
MseI TTAA 3 cut(s) 6, 201, 309
MslI CAYNNNNRTG 1 cut(s) 201
MspI CCGG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 275
NcoI CCATGG 1 cut(s) 518
NdeII GATC 2 cut(s) 97, 193
NlaIII CATG 4 cut(s) 22, 46, 119, 522
NmuCI GTSAC 2 cut(s) 281, 374
NsiI ATGCAT 1 cut(s) 496
NspI RCATGY 1 cut(s) 22
PagI TCATGA 1 cut(s) 42
PfeI GAWTC 1 cut(s) 89
PflFI GACNNNGTC 1 cut(s) 422
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PstNI CAGNNNCTG 1 cut(s) 473
PsyI GACNNNGTC 1 cut(s) 422
RsaI GTAC 1 cut(s) 57
RsaNI GTAC 1 cut(s) 56
RseI CAYNNNNRTG 1 cut(s) 201
SaqAI TTAA 3 cut(s) 6, 201, 309
Sau3AI GATC 2 cut(s) 97, 193
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 1 cut(s) 275
SduI GDGCHC 2 cut(s) 358, 517
SetI ASST 8 cut(s) 76, 154, 201, 212, 300, 353, 423, 439
SfaNI GCATC 1 cut(s) 481
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 2 cut(s) 28, 35
SmoI CTYRAG 2 cut(s) 28, 35
Sse9I AATT 2 cut(s) 161, 246
SsiI CCGC 1 cut(s) 167
SspI AATATT 1 cut(s) 139
SspMI CTAG 2 cut(s) 71, 408
StyD4I CCNGG 1 cut(s) 273
StyI CCWWGG 2 cut(s) 414, 518
TaaI ACNGT 2 cut(s) 287, 395
TaiI ACGT 1 cut(s) 423
TaqI TCGA 1 cut(s) 499
TasI AATT 2 cut(s) 161, 246
TatI WGTACW 1 cut(s) 55
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 6, 201, 309
Tru9I TTAA 3 cut(s) 6, 201, 309
TscAI CASTG 2 cut(s) 150, 383
TseFI GTSAC 2 cut(s) 281, 374
Tsp45I GTSAC 2 cut(s) 281, 374
TspDTI ATGAA 1 cut(s) 31
TspRI CASTG 2 cut(s) 150, 383
Tth111I GACNNNGTC 1 cut(s) 422
XapI RAATTY 1 cut(s) 161
XceI RCATGY 1 cut(s) 22
XspI CTAG 2 cut(s) 71, 408
ZraI GACGTC 1 cut(s) 421
Zsp2I ATGCAT 1 cut(s) 496
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.