Rh7DG296800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000653
Physical Location & Seq
Forward (+)
33732847 .. 33736287
3441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG296800.1

Sequence Viewer

Length: 765 bp
ATGAGAAGGGAGTTGAAGAGACAAAGAAGAAAGCTCGCTAAGATGAGAAGGGAGCTGAAGAGACAAAGAAGAAAGCTCGAGATACAGAATCTGAACGACAAAGTCGAAGTCGAATATATACCAAAGCAAAAAATCGACGAGAAATTATATTTTACGGAGGAGGAATATGCAAGTAGGCGCTTGATTATACCAGAGGACGAAGCCGCCGAGTTCGCGGAGCAGGCGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCGAATCTGAACAACAAAGCCGAAGTCGCGGAGCTTCGGAAAAGGCTTCAAAGAAAGACAAGCTCTGACCTTATAATAAAAGAAGACGGAGAAGTAAAAGATTATGAATATGGCTATGGCGTTTGTGCTAACATGGATGAGAATCACTATGATTCGGACTGCCCATGGCTAGATAAACTGCCACCAGACCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGTGAGCTGTGCTGTTCCAAGAGAGGTTCCAAGAGAGGATATGCTGTTCTCAAGTCCTGCATATTTTGTCATTCAGCTGGTCACTGGCCTTGGGAATGCCTCACTGGCCCCAAGATTCCGGGGCTCACGGAGGAGCTCGTCGAGGAGCATCGCAATCACGATGATCAAAATGACTATGACCAGGAGATGCTTCTTTCTTTTGCCACTGACTTGCAGAATGTGCAAACTCTGTGGTCACTTCTCACGTACCAATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

254

Amino Acids

30.1

Weight (kDa)

7.0

Isoelectric Point (pI)

62.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 338
AccII CGCG 2 cut(s) 215, 293
AciI CCGC 3 cut(s) 204, 215, 293
AcoI YGGCCR 1 cut(s) 499
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 755
AgsI TTSAA 2 cut(s) 16, 314
AjnI CCWGG 1 cut(s) 687
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 9 cut(s) 34, 55, 76, 256, 298, 327, 514, 584, 643
AluI AGCT 9 cut(s) 34, 55, 76, 256, 298, 327, 514, 584, 643
Alw21I GWGCWC 1 cut(s) 645
Alw26I GTCTC 2 cut(s) 13, 55
AlwNI CAGNNNCTG 1 cut(s) 91
Ama87I CYCGRG 1 cut(s) 77
AoxI GGCC 4 cut(s) 466, 499, 593, 613
ArsI GACNNNNNNTTYG 4 cut(s) 93, 125, 273, 305
AspLEI GCGC 1 cut(s) 180
AspS9I GGNCC 2 cut(s) 467, 614
AsuC2I CCSGG 1 cut(s) 627
AsuHPI GGTGA 1 cut(s) 521
AvaI CYCGRG 1 cut(s) 77
BalI TGGCCA 1 cut(s) 501
BanII GRGCYC 2 cut(s) 633, 645
BbsI GAAGAC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 645
BccI CCATC 1 cut(s) 228
BciT130I CCWGG 1 cut(s) 689
BclI TGATCA 1 cut(s) 670
BcnI CCSGG 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 13, 55
BfaI CTAG 1 cut(s) 434
BfoI RGCGCY 1 cut(s) 181
BglI GCCNNNNNGGC 1 cut(s) 612
BisI GCNGC 1 cut(s) 204
BlsI GCNGC 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 627, 689
BmeT110I CYCGRG 1 cut(s) 77
BmgT120I GGNCC 2 cut(s) 467, 614
BmiI GGNNCC 2 cut(s) 535, 616
BmrFI CCNGG 2 cut(s) 627, 689
BmsI GCATC 3 cut(s) 498, 664, 684
BpiI GAAGAC 1 cut(s) 354
BpuEI CTTGAG 1 cut(s) 542
BpuMI CCSGG 1 cut(s) 627
BsaAI YACGTR 1 cut(s) 753
BsaBI GATNNNNATC 1 cut(s) 405
BsaJI CCNNGG 3 cut(s) 428, 596, 626
Bse1I ACTGG 2 cut(s) 596, 616
Bse8I GATNNNNATC 1 cut(s) 405
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 3 cut(s) 428, 596, 626
BseGI GGATG 1 cut(s) 406
BseJI GATNNNNATC 1 cut(s) 405
BseNI ACTGG 2 cut(s) 596, 616
BseRI GAGGAG 3 cut(s) 173, 653, 665
Bsh1236I CGCG 2 cut(s) 215, 293
BshFI GGCC 4 cut(s) 468, 501, 595, 615
BsiHKAI GWGCWC 1 cut(s) 645
BsiHKCI CYCGRG 1 cut(s) 77
BsiSI CCGG 1 cut(s) 626
BsmAI GTCTC 2 cut(s) 13, 55
BsmI GAATGC 1 cut(s) 608
BsnI GGCC 4 cut(s) 468, 501, 595, 615
BsoBI CYCGRG 1 cut(s) 77
Bsp1286I GDGCHC 2 cut(s) 633, 645
Bsp143I GATC 1 cut(s) 670
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 3 cut(s) 204, 215, 293
BspANI GGCC 4 cut(s) 468, 501, 595, 615
BspFNI CGCG 2 cut(s) 215, 293
BspLI GGNNCC 2 cut(s) 535, 616
BsrI ACTGG 2 cut(s) 596, 616
BssECI CCNNGG 3 cut(s) 428, 596, 626
BssMI GATC 1 cut(s) 670
BssT1I CCWWGG 2 cut(s) 428, 596
Bst2UI CCWGG 1 cut(s) 689
Bst6I CTCTTC 2 cut(s) 11, 53
BstAPI GCANNNNNTGC 1 cut(s) 727
BstBAI YACGTR 1 cut(s) 753
BstC8I GCNNGC 2 cut(s) 36, 222
BstDEI CTNAG 1 cut(s) 39
BstDSI CCRYGG 1 cut(s) 428
BstF5I GGATG 1 cut(s) 406
BstFNI CGCG 2 cut(s) 215, 293
BstH2I RGCGCY 1 cut(s) 181
BstHHI GCGC 1 cut(s) 180
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 2 cut(s) 13, 55
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 5 cut(s) 212, 221, 290, 612, 727
BstNI CCWGG 1 cut(s) 689
BstSCI CCNGG 2 cut(s) 625, 687
BstUI CGCG 2 cut(s) 215, 293
BstV2I GAAGAC 1 cut(s) 354
BsuRI GGCC 4 cut(s) 468, 501, 595, 615
BtgI CCRYGG 1 cut(s) 428
BtgZI GCGATG 1 cut(s) 641
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 3 cut(s) 589, 609, 711
Cac8I GCNNGC 2 cut(s) 36, 222
CaiI CAGNNNCTG 1 cut(s) 91
CfoI GCGC 1 cut(s) 180
Cfr13I GGNCC 2 cut(s) 467, 614
Csp6I GTAC 1 cut(s) 754
CspCI CAANNNNNGTGG 2 cut(s) 719, 754
CviAII CATG 2 cut(s) 397, 429
CviQI GTAC 1 cut(s) 754
DdeI CTNAG 1 cut(s) 39
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
EaeI YGGCCR 1 cut(s) 499
Eam1104I CTCTTC 2 cut(s) 11, 53
EarI CTCTTC 2 cut(s) 11, 53
Ecl136II GAGCTC 1 cut(s) 643
Eco130I CCWWGG 2 cut(s) 428, 596
Eco24I GRGCYC 2 cut(s) 633, 645
Eco53kI GAGCTC 1 cut(s) 643
Eco57I CTGAAG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 77
EcoICRI GAGCTC 1 cut(s) 643
EcoRII CCWGG 1 cut(s) 687
EcoT14I CCWWGG 2 cut(s) 428, 596
EcoT38I GRGCYC 2 cut(s) 633, 645
ErhI CCWWGG 2 cut(s) 428, 596
FaeI CATG 2 cut(s) 400, 432
FatI CATG 2 cut(s) 396, 428
FbaI TGATCA 1 cut(s) 670
Fnu4HI GCNGC 1 cut(s) 204
FokI GGATG 1 cut(s) 413
FriOI GRGCYC 2 cut(s) 633, 645
Fsp4HI GCNGC 1 cut(s) 204
FspBI CTAG 1 cut(s) 434
GlaI GCGC 1 cut(s) 179
GluI GCNGC 1 cut(s) 204
HaeII RGCGCY 1 cut(s) 181
HaeIII GGCC 4 cut(s) 468, 501, 595, 615
HapII CCGG 1 cut(s) 626
HhaI GCGC 1 cut(s) 180
Hin1II CATG 2 cut(s) 400, 432
Hin6I GCGC 1 cut(s) 178
HinP1I GCGC 1 cut(s) 178
HinfI GANTC 5 cut(s) 88, 268, 406, 416, 622
HpaII CCGG 1 cut(s) 626
HphI GGTGA 1 cut(s) 521
Hpy188I TCNGA 5 cut(s) 93, 273, 303, 331, 421
Hpy188III TCNNGA 2 cut(s) 79, 665
Hpy99I CGWCG 2 cut(s) 140, 650
HpyAV CCTTC 3 cut(s) 42, 222, 235
HpyCH4IV ACGT 1 cut(s) 752
HpyCH4V TGCA 5 cut(s) 170, 489, 567, 721, 730
HpyF10VI GCNNNNNNNGC 5 cut(s) 212, 221, 290, 612, 727
HpyF3I CTNAG 1 cut(s) 39
HpySE526I ACGT 1 cut(s) 752
Hsp92II CATG 2 cut(s) 400, 432
HspAI GCGC 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 670
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 6 cut(s) 52, 217, 261, 295, 640, 652
LweI GCATC 3 cut(s) 498, 664, 684
MaeI CTAG 1 cut(s) 434
MaeII ACGT 1 cut(s) 752
MaeIII GTNAC 2 cut(s) 587, 741
MalI GATC 1 cut(s) 672
MboI GATC 1 cut(s) 670
MboII GAAGA 6 cut(s) 28, 39, 70, 81, 250, 359
MhlI GDGCHC 2 cut(s) 633, 645
MlsI TGGCCA 1 cut(s) 501
MluCI AATT 2 cut(s) 143, 758
MluNI TGGCCA 1 cut(s) 501
MnlI CCTC 8 cut(s) 151, 154, 187, 524, 536, 617, 631, 643
Mox20I TGGCCA 1 cut(s) 501
MscI TGGCCA 1 cut(s) 501
Msp20I TGGCCA 1 cut(s) 501
MspA1I CMGCKG 1 cut(s) 584
MspI CCGG 1 cut(s) 626
MspR9I CCNGG 2 cut(s) 627, 689
Mva1269I GAATGC 1 cut(s) 608
MvaI CCWGG 1 cut(s) 689
MvnI CGCG 2 cut(s) 215, 293
MwoI GCNNNNNNNGC 5 cut(s) 212, 221, 290, 612, 727
NciI CCSGG 1 cut(s) 627
NcoI CCATGG 1 cut(s) 428
NdeII GATC 1 cut(s) 670
NlaIII CATG 2 cut(s) 400, 432
NlaIV GGNNCC 2 cut(s) 535, 616
NmeAIII GCCGAG 1 cut(s) 232
NmuCI GTSAC 2 cut(s) 587, 741
PaeR7I CTCGAG 1 cut(s) 77
PcsI WCGNNNNNNNCGW 2 cut(s) 102, 204
PctI GAATGC 1 cut(s) 608
PfeI GAWTC 5 cut(s) 88, 268, 406, 416, 622
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 753
PsiI TTATAA 1 cut(s) 338
Psp124BI GAGCTC 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 687
PspGI CCWGG 1 cut(s) 687
PspN4I GGNNCC 2 cut(s) 535, 616
PspPI GGNCC 2 cut(s) 467, 614
PstNI CAGNNNCTG 1 cut(s) 91
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 584
RsaI GTAC 1 cut(s) 755
RsaNI GTAC 1 cut(s) 754
SacI GAGCTC 1 cut(s) 645
SatI GCNGC 1 cut(s) 204
Sau3AI GATC 1 cut(s) 670
Sau96I GGNCC 2 cut(s) 467, 614
ScrFI CCNGG 2 cut(s) 627, 689
SduI GDGCHC 2 cut(s) 633, 645
SfaNI GCATC 3 cut(s) 498, 664, 684
Sfr274I CTCGAG 1 cut(s) 77
SlaI CTCGAG 1 cut(s) 77
SmlI CTYRAG 2 cut(s) 77, 557
SmoI CTYRAG 2 cut(s) 77, 557
Sse9I AATT 2 cut(s) 143, 758
SsiI CCGC 3 cut(s) 204, 215, 293
SspMI CTAG 1 cut(s) 434
SstI GAGCTC 1 cut(s) 645
StyD4I CCNGG 2 cut(s) 625, 687
StyI CCWWGG 2 cut(s) 428, 596
TaiI ACGT 1 cut(s) 755
TaqI TCGA 5 cut(s) 78, 105, 111, 135, 648
TasI AATT 2 cut(s) 143, 758
TauI GCSGC 1 cut(s) 206
TfiI GAWTC 5 cut(s) 88, 268, 406, 416, 622
TscAI CASTG 3 cut(s) 596, 616, 718
TseFI GTSAC 2 cut(s) 587, 741
Tsp45I GTSAC 2 cut(s) 587, 741
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 3 cut(s) 170, 366, 650
TspRI CASTG 3 cut(s) 596, 616, 718
Tth111I GACNNNGTC 1 cut(s) 101
XcmI CCANNNNNNNNNTGG 1 cut(s) 461
XhoI CTCGAG 1 cut(s) 77
XspI CTAG 1 cut(s) 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.