RchiOBHm_Chr1g0378631

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000653
Physical Location & Seq
Reverse (-)
65049127 .. 65056555
7429 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60204

Sequence Viewer

Length: 963 bp
ATGGAATGCGGCGAAACCTCGATGCCGGAAATTATCAAGGAAGCCAAGGAGGCGGATCTTCATGAATCACTAGCTGGGAAATTCCCTGTTGCTTTTGCCAAACCAATGAGTGATTTCGAAGGTCGAGCAGAATCTGAATTGTATAGGGATTTGCTGTACTCTTTGCAAGAGGTTGGGTGCCAGATGAGGCTGCTGGGCATTAGCAGTGTTCCTGAAGCCAACAAGAACAGGACTCATGGTAGCAAGGGGGAAGAATTAAAGGGTACTGGTTATACTTTGGCCCAAATTCTGATAGACATCGTACGTTTCGCATCAAAAGTGGGTTTTCATATTGATTTGGATTCCATCGATTCCCGTGATCGGAAGATGCTGAAAGATGAGACCAAGGCTGGTGTTATGGAATGGGAACCTATGGGATCGGATCTCTTGAATGATCAAGTTGAGAAGAAGCAGCCGGGAATGATCAAATGGGTGGATCTGGGGGACAGCACTGAAGAATCGGAGGACGAAGAATCTGAGGACCAGGAAACCAAGGATGAGGATCTGAATCTGGCTGTTGAGAACTGCTCTGATGGTGAACAATTTTTAAAACTTTGTCAGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTATGGGCGACTATGTGTATGTGAAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCGTTTGTTTTGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATACAATGCAAGGGTTGTGATAAGCTGGGACTTGCATGCTGTTCTAAGGGAGTACGTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGACTGCCCCAGCTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

320

Amino Acids

35.86

Weight (kDa)

4.6

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 177
AciI CCGC 2 cut(s) 9, 53
AclWI GGATC 6 cut(s) 63, 424, 429, 483, 549, 738
AcsI RAATTY 2 cut(s) 80, 285
AcuI CTGAAG 2 cut(s) 234, 513
AcyI GRCGYC 1 cut(s) 790
AfaI GTAC 4 cut(s) 158, 265, 303, 855
AfiI CCNNNNNNNGG 1 cut(s) 360
AgsI TTSAA 1 cut(s) 430
AjnI CCWGG 3 cut(s) 522, 726, 772
AluBI AGCT 3 cut(s) 74, 826, 921
AluI AGCT 3 cut(s) 74, 826, 921
Alw26I GTCTC 2 cut(s) 374, 797
AlwI GGATC 6 cut(s) 63, 424, 429, 483, 549, 738
AlwNI CAGNNNCTG 1 cut(s) 134
AoxI GGCC 2 cut(s) 279, 942
ApeKI GCWGC 2 cut(s) 190, 451
ApoI RAATTY 2 cut(s) 80, 285
AspS9I GGNCC 2 cut(s) 280, 520
AsuC2I CCSGG 1 cut(s) 456
AsuHPI GGTGA 1 cut(s) 587
AsuII TTCGAA 1 cut(s) 117
AvaII GGWCC 1 cut(s) 520
BanI GGYRCC 1 cut(s) 177
BbvI GCAGC 2 cut(s) 177, 463
BccI CCATC 3 cut(s) 353, 566, 674
BciT130I CCWGG 3 cut(s) 524, 728, 774
BclI TGATCA 2 cut(s) 433, 462
BcnI CCSGG 1 cut(s) 456
BcoDI GTCTC 2 cut(s) 374, 797
BfaI CTAG 2 cut(s) 71, 758
BglI GCCNNNNNGGC 1 cut(s) 50
BisI GCNGC 3 cut(s) 10, 191, 452
BlsI GCNGC 3 cut(s) 11, 192, 453
Bme1390I CCNGG 4 cut(s) 456, 524, 728, 774
Bme18I GGWCC 1 cut(s) 520
BmgT120I GGNCC 2 cut(s) 280, 520
BmiI GGNNCC 2 cut(s) 179, 408
BmrFI CCNGG 4 cut(s) 456, 524, 728, 774
BmrI ACTGGG 1 cut(s) 910
BmsI GCATC 4 cut(s) 12, 320, 357, 604
BmuI ACTGGG 1 cut(s) 910
BplI GAGNNNNNCTC 2 cut(s) 551, 583
BpmI CTGGAG 1 cut(s) 639
Bpu14I TTCGAA 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 456
Bsa29I ATCGAT 1 cut(s) 348
BsaAI YACGTR 1 cut(s) 857
BsaBI GATNNNNATC 3 cut(s) 296, 540, 546
BsaHI GRCGYC 1 cut(s) 790
BsaI GGTCTC 1 cut(s) 374
BsaJI CCNNGG 4 cut(s) 45, 384, 531, 752
BsaXI ACNNNNNCTCC 2 cut(s) 862, 892
Bsc4I CCNNNNNNNGG 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 271, 905
Bse8I GATNNNNATC 3 cut(s) 296, 540, 546
BseBI CCWGG 3 cut(s) 524, 728, 774
BseCI ATCGAT 1 cut(s) 348
BseDI CCNNGG 4 cut(s) 45, 384, 531, 752
BseGI GGATG 1 cut(s) 541
BseJI GATNNNNATC 3 cut(s) 296, 540, 546
BseLI CCNNNNNNNGG 1 cut(s) 360
BseMII CTCAG 2 cut(s) 507, 880
BseNI ACTGG 2 cut(s) 271, 905
BseXI GCAGC 2 cut(s) 177, 463
BseYI CCCAGC 4 cut(s) 74, 193, 826, 917
BshFI GGCC 2 cut(s) 281, 944
BshNI GGYRCC 1 cut(s) 177
BshVI ATCGAT 1 cut(s) 348
BsiSI CCGG 2 cut(s) 26, 455
BsiWI CGTACG 1 cut(s) 301
BslFI GGGAC 4 cut(s) 497, 696, 843, 920
BslI CCNNNNNNNGG 1 cut(s) 360
BsmAI GTCTC 2 cut(s) 374, 797
BsmBI CGTCTC 1 cut(s) 797
BsmFI GGGAC 4 cut(s) 497, 696, 843, 920
BsmI GAATGC 1 cut(s) 11
BsnI GGCC 2 cut(s) 281, 944
Bso31I GGTCTC 1 cut(s) 374
Bsp119I TTCGAA 1 cut(s) 117
Bsp19I CCATGG 1 cut(s) 752
BspACI CCGC 2 cut(s) 9, 53
BspANI GGCC 2 cut(s) 281, 944
BspCNI CTCAG 2 cut(s) 508, 879
BspDI ATCGAT 1 cut(s) 348
BspHI TCATGA 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 179, 408
BspPI GGATC 6 cut(s) 63, 424, 429, 483, 549, 738
BspT104I TTCGAA 1 cut(s) 117
BspT107I GGYRCC 1 cut(s) 177
BspTNI GGTCTC 1 cut(s) 374
BsrI ACTGG 2 cut(s) 271, 905
BssECI CCNNGG 4 cut(s) 45, 384, 531, 752
BssNI GRCGYC 1 cut(s) 790
BssT1I CCWWGG 4 cut(s) 45, 384, 531, 752
Bst2UI CCWGG 3 cut(s) 524, 728, 774
Bst4CI ACNGT 2 cut(s) 674, 784
BstACI GRCGYC 1 cut(s) 790
BstBAI YACGTR 1 cut(s) 857
BstBI TTCGAA 1 cut(s) 117
BstC8I GCNNGC 1 cut(s) 838
BstDEI CTNAG 3 cut(s) 516, 846, 866
BstDSI CCRYGG 1 cut(s) 752
BstF5I GGATG 1 cut(s) 541
BstMAI GTCTC 2 cut(s) 374, 797
BstMWI GCNNNNNNNGC 1 cut(s) 50
BstNI CCWGG 3 cut(s) 524, 728, 774
BstNSI RCATGY 1 cut(s) 840
BstSCI CCNGG 4 cut(s) 454, 522, 726, 772
BstV1I GCAGC 2 cut(s) 177, 463
BstX2I RGATCY 4 cut(s) 55, 421, 475, 541
BstYI RGATCY 4 cut(s) 55, 421, 475, 541
Bsu15I ATCGAT 1 cut(s) 348
BsuRI GGCC 2 cut(s) 281, 944
BsuTUI ATCGAT 1 cut(s) 348
BtgI CCRYGG 1 cut(s) 752
BtsCI GGATG 1 cut(s) 541
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 4 cut(s) 211, 489, 679, 898
Cac8I GCNNGC 1 cut(s) 838
CaiI CAGNNNCTG 1 cut(s) 134
CciI TCATGA 1 cut(s) 61
Cfr13I GGNCC 2 cut(s) 280, 520
ClaI ATCGAT 1 cut(s) 348
CseI GACGC 1 cut(s) 779
CsiI ACCWGGT 1 cut(s) 772
Csp6I GTAC 4 cut(s) 157, 264, 302, 854
CviAII CATG 5 cut(s) 62, 236, 753, 837, 960
CviQI GTAC 4 cut(s) 157, 264, 302, 854
DdeI CTNAG 3 cut(s) 516, 846, 866
DraI TTTAAA 1 cut(s) 588
EciI GGCGGA 1 cut(s) 68
Eco130I CCWWGG 4 cut(s) 45, 384, 531, 752
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 520
Eco57I CTGAAG 2 cut(s) 234, 513
EcoRII CCWGG 3 cut(s) 522, 726, 772
EcoT14I CCWWGG 4 cut(s) 45, 384, 531, 752
ErhI CCWWGG 4 cut(s) 45, 384, 531, 752
Esp3I CGTCTC 1 cut(s) 797
FaeI CATG 5 cut(s) 65, 239, 756, 840, 963
FaqI GGGAC 4 cut(s) 497, 696, 843, 920
FatI CATG 5 cut(s) 61, 235, 752, 836, 959
FbaI TGATCA 2 cut(s) 433, 462
Fnu4HI GCNGC 3 cut(s) 10, 191, 452
FokI GGATG 1 cut(s) 548
Fsp4HI GCNGC 3 cut(s) 10, 191, 452
FspBI CTAG 2 cut(s) 71, 758
GluI GCNGC 3 cut(s) 10, 191, 452
GsaI CCCAGC 4 cut(s) 78, 197, 830, 921
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 2 cut(s) 281, 944
HapII CCGG 2 cut(s) 26, 455
HgaI GACGC 1 cut(s) 779
Hin1I GRCGYC 1 cut(s) 790
Hin1II CATG 5 cut(s) 65, 239, 756, 840, 963
HinfI GANTC 8 cut(s) 65, 131, 232, 341, 350, 497, 512, 547
HpaII CCGG 2 cut(s) 26, 455
HphI GGTGA 1 cut(s) 587
Hpy166II GTNNAC 1 cut(s) 578
Hpy188I TCNGA 9 cut(s) 136, 291, 363, 421, 502, 517, 546, 571, 600
Hpy188III TCNNGA 4 cut(s) 62, 212, 427, 868
Hpy8I GTNNAC 1 cut(s) 578
HpyAV CCTTC 4 cut(s) 113, 692, 698, 955
HpyCH4III ACNGT 2 cut(s) 674, 784
HpyCH4IV ACGT 2 cut(s) 304, 856
HpyCH4V TGCA 3 cut(s) 166, 810, 836
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
HpyF3I CTNAG 3 cut(s) 516, 846, 866
HpySE526I ACGT 2 cut(s) 304, 856
Hsp92I GRCGYC 1 cut(s) 790
Hsp92II CATG 5 cut(s) 65, 239, 756, 840, 963
Ksp22I TGATCA 2 cut(s) 433, 462
Lsp1109I GCAGC 2 cut(s) 177, 463
LweI GCATC 4 cut(s) 12, 320, 357, 604
MabI ACCWGGT 1 cut(s) 772
MaeI CTAG 2 cut(s) 71, 758
MaeII ACGT 2 cut(s) 304, 856
MaeIII GTNAC 1 cut(s) 896
MflI RGATCY 4 cut(s) 55, 421, 475, 541
MluCI AATT 7 cut(s) 30, 80, 137, 254, 285, 581, 952
MlyI GAGTC 1 cut(s) 226
MnlI CCTC 8 cut(s) 28, 43, 163, 180, 496, 511, 532, 864
MseI TTAA 3 cut(s) 257, 587, 762
MspI CCGG 2 cut(s) 26, 455
MspR9I CCNGG 4 cut(s) 456, 524, 728, 774
Mva1269I GAATGC 1 cut(s) 11
MvaI CCWGG 3 cut(s) 524, 728, 774
MwoI GCNNNNNNNGC 1 cut(s) 50
NciI CCSGG 1 cut(s) 456
NcoI CCATGG 1 cut(s) 752
NlaIII CATG 5 cut(s) 65, 239, 756, 840, 963
NlaIV GGNNCC 2 cut(s) 179, 408
NmuCI GTSAC 1 cut(s) 896
NspI RCATGY 1 cut(s) 840
NspV TTCGAA 1 cut(s) 117
PaeI GCATGC 1 cut(s) 840
PagI TCATGA 1 cut(s) 61
PctI GAATGC 1 cut(s) 11
PfeI GAWTC 7 cut(s) 65, 131, 341, 350, 497, 512, 547
Pfl23II CGTACG 1 cut(s) 301
PkrI GCNGC 3 cut(s) 11, 192, 453
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
Ppu21I YACGTR 1 cut(s) 857
Psp6I CCWGG 3 cut(s) 522, 726, 772
PspFI CCCAGC 4 cut(s) 74, 193, 826, 917
PspGI CCWGG 3 cut(s) 522, 726, 772
PspLI CGTACG 1 cut(s) 301
PspN4I GGNNCC 2 cut(s) 179, 408
PspPI GGNCC 2 cut(s) 280, 520
PsrI GAACNNNNNNTAC 2 cut(s) 846, 878
PstNI CAGNNNCTG 1 cut(s) 134
PsuI RGATCY 4 cut(s) 55, 421, 475, 541
RsaI GTAC 4 cut(s) 158, 265, 303, 855
RsaNI GTAC 4 cut(s) 157, 264, 302, 854
SaqAI TTAA 3 cut(s) 257, 587, 762
SatI GCNGC 3 cut(s) 10, 191, 452
Sau96I GGNCC 2 cut(s) 280, 520
SchI GAGTC 1 cut(s) 226
ScrFI CCNGG 4 cut(s) 456, 524, 728, 774
SexAI ACCWGGT 1 cut(s) 772
SfaNI GCATC 4 cut(s) 12, 320, 357, 604
SfuI TTCGAA 1 cut(s) 117
SinI GGWCC 1 cut(s) 520
SphI GCATGC 1 cut(s) 840
Sse9I AATT 7 cut(s) 30, 80, 137, 254, 285, 581, 952
SsiI CCGC 2 cut(s) 9, 53
SspMI CTAG 2 cut(s) 71, 758
StyD4I CCNGG 4 cut(s) 454, 522, 726, 772
StyI CCWWGG 4 cut(s) 45, 384, 531, 752
TaaI ACNGT 2 cut(s) 674, 784
TaiI ACGT 2 cut(s) 307, 859
TaqI TCGA 4 cut(s) 20, 117, 124, 348
TasI AATT 7 cut(s) 30, 80, 137, 254, 285, 581, 952
TatI WGTACW 1 cut(s) 156
TauI GCSGC 1 cut(s) 12
TfiI GAWTC 7 cut(s) 65, 131, 341, 350, 497, 512, 547
Tru1I TTAA 3 cut(s) 257, 587, 762
Tru9I TTAA 3 cut(s) 257, 587, 762
TscAI CASTG 4 cut(s) 211, 496, 679, 905
TseFI GTSAC 1 cut(s) 896
TseI GCWGC 2 cut(s) 190, 451
Tsp45I GTSAC 1 cut(s) 896
TspDTI ATGAA 3 cut(s) 50, 78, 317
TspGWI ACGGA 1 cut(s) 623
TspRI CASTG 4 cut(s) 211, 496, 679, 905
VpaK11BI GGWCC 1 cut(s) 520
XapI RAATTY 2 cut(s) 80, 285
XceI RCATGY 1 cut(s) 840
XspI CTAG 2 cut(s) 71, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.