RLG00000026416

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000653
Physical Location & Seq
Forward (+)
2904339 .. 2909602
5264 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026416

Sequence Viewer

Length: 828 bp
ATGCCGGAAATTATCAAGGAAGCCAAGGAGGCGGATCTTCACGAATCACTAGCTGGGAAATTCCCTGTTGCTTTTGCCAAACCAATGAGTGATTTCGAAGGTCGAGCAGAATCTGAATTGTATAGGGATTTGCTGTACTCTTTGCAAGATGCTGGGTGCCGGATGAGGCTGCTGGGCATTAGCAGTTTTCCTGAAGCCAACAAGAACAGGACTCATGGTAGCAAGGGGGAAGAATTAAACGGTACTGGTTACACTTTGGCCCAATTTCTGACAGATATCGTAGGTTTCGCATCAAAAGTGGGTTTTCATACTGATTTGGATTCCATCGATTGCCTTGATGGGAAGATGCTGAAAGATGAGACCAAGACTGGTGAATCTGAGGACCAGGAAACCAAGGAGGAGGATCTGAATCTGGCTGTTGACAACTGCTCTGATGGTAAACAAAAATCTAAACTTTGTCAGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTGTGGGCGACTATGTGTATGTGAAAGACTCTGAAAAGGAAGAAAACAATGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCATTTGTTTCGACCTGGATCACAATAACAATAAGTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACTGTTGGGCGTCTCTATGACATAGAATGCAAGGGTTGTGGTAAGTTGGGACCTGCATGCTGTTCTGAGGGAGGACGTGCTGTTCTCAGGAGGTGTGGTCATTGTTATGATTTTGGTCACTGGGGGGACGTCTGCCCGAACTATAAGTATATGCCCCAGGTGTGGTCATTGTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

276

Amino Acids

30.52

Weight (kDa)

4.81

Isoelectric Point (pI)

44.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 783
Acc36I ACCTGC 1 cut(s) 712
AccB1I GGYRCC 1 cut(s) 156
AciI CCGC 1 cut(s) 32
AclWI GGATC 3 cut(s) 42, 411, 609
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 213
AcyI GRCGYC 2 cut(s) 661, 780
AfaI GTAC 2 cut(s) 137, 244
AfiI CCNNNNNNNGG 1 cut(s) 813
AjiI CACGTC 1 cut(s) 728
AjnI CCWGG 4 cut(s) 384, 597, 643, 807
AloI GAACNNNNNNTCC 2 cut(s) 717, 749
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 353, 668
AlwI GGATC 3 cut(s) 42, 411, 609
AlwNI CAGNNNCTG 1 cut(s) 113
AoxI GGCC 1 cut(s) 258
ApeKI GCWGC 1 cut(s) 169
ApoI RAATTY 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 259, 382, 701
AsuHPI GGTGA 1 cut(s) 383
AsuII TTCGAA 1 cut(s) 96
AvaII GGWCC 2 cut(s) 382, 701
BaeGI GKGCMC 1 cut(s) 623
BanI GGYRCC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 156
BccI CCATC 4 cut(s) 332, 332, 428, 545
BciT130I CCWGG 4 cut(s) 386, 599, 645, 809
BcoDI GTCTC 2 cut(s) 353, 668
BfaI CTAG 2 cut(s) 50, 629
BfuAI ACCTGC 1 cut(s) 712
BglI GCCNNNNNGGC 1 cut(s) 29
BisI GCNGC 1 cut(s) 170
BlsI GCNGC 1 cut(s) 171
Bme1390I CCNGG 4 cut(s) 386, 599, 645, 809
Bme18I GGWCC 2 cut(s) 382, 701
BmgBI CACGTC 1 cut(s) 728
BmgT120I GGNCC 3 cut(s) 259, 382, 701
BmiI GGNNCC 2 cut(s) 158, 702
BmrFI CCNGG 4 cut(s) 386, 599, 645, 809
BmrI ACTGGG 1 cut(s) 781
BmsI GCATC 4 cut(s) 139, 299, 336, 466
BmuI ACTGGG 1 cut(s) 781
BpmI CTGGAG 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 96
Bsa29I ATCGAT 1 cut(s) 327
BsaBI GATNNNNATC 1 cut(s) 408
BsaHI GRCGYC 2 cut(s) 661, 780
BsaI GGTCTC 1 cut(s) 353
BsaJI CCNNGG 4 cut(s) 24, 393, 623, 807
BsaXI ACNNNNNCTCC 2 cut(s) 733, 763
Bsc4I CCNNNNNNNGG 1 cut(s) 813
Bse1I ACTGG 3 cut(s) 250, 373, 776
Bse8I GATNNNNATC 1 cut(s) 408
BseBI CCWGG 4 cut(s) 386, 599, 645, 809
BseCI ATCGAT 1 cut(s) 327
BseDI CCNNGG 4 cut(s) 24, 393, 623, 807
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 408
BseLI CCNNNNNNNGG 1 cut(s) 813
BseMII CTCAG 3 cut(s) 369, 708, 751
BseNI ACTGG 3 cut(s) 250, 373, 776
BseRI GAGGAG 1 cut(s) 413
BseSI GKGCMC 1 cut(s) 623
BseXI GCAGC 1 cut(s) 156
BseYI CCCAGC 3 cut(s) 53, 152, 172
BshFI GGCC 1 cut(s) 260
BshNI GGYRCC 1 cut(s) 156
BshVI ATCGAT 1 cut(s) 327
BsiSI CCGG 2 cut(s) 5, 160
BslFI GGGAC 3 cut(s) 567, 714, 791
BslI CCNNNNNNNGG 1 cut(s) 813
BsmAI GTCTC 2 cut(s) 353, 668
BsmBI CGTCTC 1 cut(s) 668
BsmFI GGGAC 3 cut(s) 567, 714, 791
BsmI GAATGC 1 cut(s) 683
BsnI GGCC 1 cut(s) 260
Bso31I GGTCTC 1 cut(s) 353
Bsp119I TTCGAA 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 623
Bsp143I GATC 4 cut(s) 34, 403, 462, 601
Bsp19I CCATGG 1 cut(s) 623
BspACI CCGC 1 cut(s) 32
BspANI GGCC 1 cut(s) 260
BspCNI CTCAG 3 cut(s) 370, 709, 750
BspDI ATCGAT 1 cut(s) 327
BspLI GGNNCC 2 cut(s) 158, 702
BspMI ACCTGC 1 cut(s) 712
BspPI GGATC 3 cut(s) 42, 411, 609
BspT104I TTCGAA 1 cut(s) 96
BspT107I GGYRCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 353
BsrI ACTGG 3 cut(s) 250, 373, 776
BssECI CCNNGG 4 cut(s) 24, 393, 623, 807
BssMI GATC 4 cut(s) 34, 403, 462, 601
BssNI GRCGYC 2 cut(s) 661, 780
BssT1I CCWWGG 3 cut(s) 24, 393, 623
Bst2UI CCWGG 4 cut(s) 386, 599, 645, 809
Bst4CI ACNGT 2 cut(s) 242, 655
BstACI GRCGYC 2 cut(s) 661, 780
BstBI TTCGAA 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 709
BstDEI CTNAG 3 cut(s) 378, 717, 737
BstDSI CCRYGG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 168
BstKTI GATC 4 cut(s) 37, 406, 465, 604
BstMAI GTCTC 2 cut(s) 353, 668
BstMBI GATC 4 cut(s) 34, 403, 462, 601
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstNI CCWGG 4 cut(s) 386, 599, 645, 809
BstNSI RCATGY 1 cut(s) 711
BstSCI CCNGG 4 cut(s) 384, 597, 643, 807
BstSLI GKGCMC 1 cut(s) 623
BstV1I GCAGC 1 cut(s) 156
BstX2I RGATCY 2 cut(s) 34, 403
BstYI RGATCY 2 cut(s) 34, 403
Bsu15I ATCGAT 1 cut(s) 327
BsuRI GGCC 1 cut(s) 260
BsuTUI ATCGAT 1 cut(s) 327
BtgI CCRYGG 1 cut(s) 623
BtrI CACGTC 1 cut(s) 728
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 769
BveI ACCTGC 1 cut(s) 712
Cac8I GCNNGC 1 cut(s) 709
CaiI CAGNNNCTG 1 cut(s) 113
Cfr13I GGNCC 3 cut(s) 259, 382, 701
ClaI ATCGAT 1 cut(s) 327
CseI GACGC 1 cut(s) 650
CsiI ACCWGGT 1 cut(s) 643
Csp6I GTAC 2 cut(s) 136, 243
CspCI CAANNNNNGTGG 2 cut(s) 670, 705
CviAII CATG 3 cut(s) 215, 624, 708
CviJI RGCY 7 cut(s) 23, 53, 169, 197, 260, 416, 628
CviKI_1 RGCY 7 cut(s) 23, 53, 169, 197, 260, 416, 628
CviQI GTAC 2 cut(s) 136, 243
DdeI CTNAG 3 cut(s) 378, 717, 737
DpnI GATC 4 cut(s) 36, 405, 464, 603
DpnII GATC 4 cut(s) 34, 403, 462, 601
EciI GGCGGA 1 cut(s) 47
Eco130I CCWWGG 3 cut(s) 24, 393, 623
Eco31I GGTCTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 277
Eco47I GGWCC 2 cut(s) 382, 701
Eco57I CTGAAG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 701
EcoRII CCWGG 4 cut(s) 384, 597, 643, 807
EcoRV GATATC 1 cut(s) 277
EcoT14I CCWWGG 3 cut(s) 24, 393, 623
ErhI CCWWGG 3 cut(s) 24, 393, 623
Esp3I CGTCTC 1 cut(s) 668
FaeI CATG 3 cut(s) 218, 627, 711
FaqI GGGAC 3 cut(s) 567, 714, 791
FatI CATG 3 cut(s) 214, 623, 707
Fnu4HI GCNGC 1 cut(s) 170
FokI GGATG 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 170
FspBI CTAG 2 cut(s) 50, 629
GluI GCNGC 1 cut(s) 170
GsaI CCCAGC 3 cut(s) 57, 156, 176
GsuI CTGGAG 1 cut(s) 501
HaeIII GGCC 1 cut(s) 260
HapII CCGG 2 cut(s) 5, 160
HgaI GACGC 1 cut(s) 650
Hin1I GRCGYC 2 cut(s) 661, 780
Hin1II CATG 3 cut(s) 218, 627, 711
HincII GTYRAC 1 cut(s) 421
HindII GTYRAC 1 cut(s) 421
HinfI GANTC 7 cut(s) 44, 110, 211, 320, 374, 409, 524
HpaII CCGG 2 cut(s) 5, 160
HphI GGTGA 1 cut(s) 383
Hpy166II GTNNAC 2 cut(s) 421, 440
Hpy188I TCNGA 8 cut(s) 115, 270, 379, 408, 433, 462, 529, 718
Hpy188III TCNNGA 3 cut(s) 41, 191, 739
Hpy8I GTNNAC 2 cut(s) 421, 440
HpyAV CCTTC 3 cut(s) 92, 563, 569
HpyCH4III ACNGT 2 cut(s) 242, 655
HpyCH4IV ACGT 2 cut(s) 727, 780
HpyCH4V TGCA 3 cut(s) 145, 681, 707
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
HpyF3I CTNAG 3 cut(s) 378, 717, 737
HpySE526I ACGT 2 cut(s) 727, 780
Hsp92I GRCGYC 2 cut(s) 661, 780
Hsp92II CATG 3 cut(s) 218, 627, 711
Kzo9I GATC 4 cut(s) 34, 403, 462, 601
Lsp1109I GCAGC 1 cut(s) 156
LweI GCATC 4 cut(s) 139, 299, 336, 466
MabI ACCWGGT 1 cut(s) 643
MaeI CTAG 2 cut(s) 50, 629
MaeII ACGT 2 cut(s) 727, 780
MaeIII GTNAC 2 cut(s) 248, 767
MalI GATC 4 cut(s) 36, 405, 464, 603
MboI GATC 4 cut(s) 34, 403, 462, 601
MboII GAAGA 7 cut(s) 29, 242, 355, 548, 560, 575, 578
MflI RGATCY 2 cut(s) 34, 403
MhlI GDGCHC 1 cut(s) 623
MluCI AATT 5 cut(s) 9, 59, 116, 233, 263
MlyI GAGTC 2 cut(s) 205, 518
MnlI CCTC 8 cut(s) 22, 159, 373, 391, 394, 712, 716, 735
MseI TTAA 2 cut(s) 236, 633
MslI CAYNNNNRTG 2 cut(s) 756, 823
MspI CCGG 2 cut(s) 5, 160
MspR9I CCNGG 4 cut(s) 386, 599, 645, 809
Mva1269I GAATGC 1 cut(s) 683
MvaI CCWGG 4 cut(s) 386, 599, 645, 809
MwoI GCNNNNNNNGC 1 cut(s) 29
NcoI CCATGG 1 cut(s) 623
NdeII GATC 4 cut(s) 34, 403, 462, 601
NlaIII CATG 3 cut(s) 218, 627, 711
NlaIV GGNNCC 2 cut(s) 158, 702
NmuCI GTSAC 1 cut(s) 767
NspI RCATGY 1 cut(s) 711
NspV TTCGAA 1 cut(s) 96
PaeI GCATGC 1 cut(s) 711
PctI GAATGC 1 cut(s) 683
PfeI GAWTC 5 cut(s) 44, 110, 320, 374, 409
PkrI GCNGC 1 cut(s) 171
PleI GAGTC 2 cut(s) 205, 518
PpsI GAGTC 2 cut(s) 205, 518
PpuMI RGGWCCY 1 cut(s) 701
Psp5II RGGWCCY 1 cut(s) 701
Psp6I CCWGG 4 cut(s) 384, 597, 643, 807
PspFI CCCAGC 3 cut(s) 53, 152, 172
PspGI CCWGG 4 cut(s) 384, 597, 643, 807
PspN4I GGNNCC 2 cut(s) 158, 702
PspPI GGNCC 3 cut(s) 259, 382, 701
PspPPI RGGWCCY 1 cut(s) 701
PstNI CAGNNNCTG 1 cut(s) 113
PsuI RGATCY 2 cut(s) 34, 403
RsaI GTAC 2 cut(s) 137, 244
RsaNI GTAC 2 cut(s) 136, 243
RseI CAYNNNNRTG 2 cut(s) 756, 823
SaqAI TTAA 2 cut(s) 236, 633
SatI GCNGC 1 cut(s) 170
Sau3AI GATC 4 cut(s) 34, 403, 462, 601
Sau96I GGNCC 3 cut(s) 259, 382, 701
SchI GAGTC 2 cut(s) 205, 518
ScrFI CCNGG 4 cut(s) 386, 599, 645, 809
SduI GDGCHC 1 cut(s) 623
SexAI ACCWGGT 1 cut(s) 643
SfaNI GCATC 4 cut(s) 139, 299, 336, 466
SfuI TTCGAA 1 cut(s) 96
SinI GGWCC 2 cut(s) 382, 701
SmiMI CAYNNNNRTG 2 cut(s) 756, 823
SphI GCATGC 1 cut(s) 711
Sse9I AATT 5 cut(s) 9, 59, 116, 233, 263
SsiI CCGC 1 cut(s) 32
SspMI CTAG 2 cut(s) 50, 629
StyD4I CCNGG 4 cut(s) 384, 597, 643, 807
StyI CCWWGG 3 cut(s) 24, 393, 623
TaaI ACNGT 2 cut(s) 242, 655
TaiI ACGT 2 cut(s) 730, 783
TaqI TCGA 4 cut(s) 96, 103, 327, 594
TasI AATT 5 cut(s) 9, 59, 116, 233, 263
TatI WGTACW 1 cut(s) 135
TfiI GAWTC 5 cut(s) 44, 110, 320, 374, 409
Tru1I TTAA 2 cut(s) 236, 633
Tru9I TTAA 2 cut(s) 236, 633
TscAI CASTG 1 cut(s) 776
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 1 cut(s) 169
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 2 cut(s) 296, 561
TspGWI ACGGA 1 cut(s) 485
TspRI CASTG 1 cut(s) 776
VpaK11BI GGWCC 2 cut(s) 382, 701
XapI RAATTY 1 cut(s) 59
XceI RCATGY 1 cut(s) 711
XspI CTAG 2 cut(s) 50, 629
ZraI GACGTC 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.