Rh1AG431700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000653
Physical Location & Seq
Reverse (-)
65786475 .. 65792077
5603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG431700.1

Sequence Viewer

Length: 897 bp
ATGAATGGCATGCCTTCTATGGTTAGTTTAAGCTATTTTTTTCTGACCTTAATACTGCTGTTGTGCATCTTCACACCGACAAACCCCAAAGCTTTGCAAGAGGTTGGGTGCCAGATGAGGCTGCTGGGCATTAGCAGTGTTCCTGAAGCCAACAAGAACAGGACTCATGCAGGTAGCAAGGGGGAAGAATTAAAGGGTACTGGTTATACTTTGGCCCAAATTCTGATAGACATCGTACGTTTCGCATCAAAAGTGGGTTTTCATATTGATTTGGATTCCATCGATTCCCGTGATCGGAAGATGCTGAAAGATGAGACCAAGGCTGGTGTTATGGAATGGGAACCTATGGGATCGGATCTCTTGAATGATCAAGTTGAGAAGAAGCAGCCGGGAATGATCAAATGGGTGGATCTGGGGGACAGCACTGAAGAATCGGAGGACGAAGAATCTGAGGACCAGGAAACCAAGGATGAGGATCTGAATCTGGCTGTTGAGAACTGCTCTGATGGTGAACAATTTTTAAAACTTTGTCAGATCAAAACAAATGATGCTGGAGTGTCTTATGTCCGTATGGGCGACTATGTGTATGTGAAAAAGGAAGAAAACAGTGAAGATGGATATAGTGAAGAAGAAGGAGAAGGTTGTCCCGTTTGTTTTGACCTGGATCACAATAACAATAACTGCCCATGGCTAGTTAATGTTCCACCAGGTAAAACAGTTGGGCGTCTCTATGACATACAATGCAAGGGTTGTGATAAGCTGGGACTTGCATGCTGTTCTAAGGGAGTACGTGCTGTTCTCAGGAGGTGTGGTCGTTGTTTTGATTTTGGTCACTGGGGGGACGACTGCCCCAGCTATAAGTATATGCCCCTTTCGGCCTTCCCAAATTATCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

298

Amino Acids

33.33

Weight (kDa)

4.67

Isoelectric Point (pI)

42.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 108
AclWI GGATC 5 cut(s) 358, 363, 417, 483, 672
AcsI RAATTY 1 cut(s) 219
AcuI CTGAAG 2 cut(s) 165, 447
AcyI GRCGYC 1 cut(s) 724
AfaI GTAC 3 cut(s) 199, 237, 789
AfiI CCNNNNNNNGG 1 cut(s) 294
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 3 cut(s) 456, 660, 706
AluBI AGCT 4 cut(s) 33, 92, 760, 855
AluI AGCT 4 cut(s) 33, 92, 760, 855
Alw26I GTCTC 2 cut(s) 308, 731
AlwI GGATC 5 cut(s) 358, 363, 417, 483, 672
AoxI GGCC 2 cut(s) 213, 876
ApeKI GCWGC 2 cut(s) 121, 385
ApoI RAATTY 1 cut(s) 219
AspS9I GGNCC 2 cut(s) 214, 454
AsuC2I CCSGG 1 cut(s) 390
AsuHPI GGTGA 1 cut(s) 521
AvaII GGWCC 1 cut(s) 454
BanI GGYRCC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 108, 397
BccI CCATC 3 cut(s) 287, 500, 608
BciT130I CCWGG 3 cut(s) 458, 662, 708
BclI TGATCA 2 cut(s) 367, 396
BcnI CCSGG 1 cut(s) 390
BcoDI GTCTC 2 cut(s) 308, 731
BfaI CTAG 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 161
BisI GCNGC 2 cut(s) 122, 386
BlsI GCNGC 2 cut(s) 123, 387
Bme1390I CCNGG 4 cut(s) 390, 458, 662, 708
Bme18I GGWCC 1 cut(s) 454
BmgT120I GGNCC 2 cut(s) 214, 454
BmiI GGNNCC 2 cut(s) 110, 342
BmrFI CCNGG 4 cut(s) 390, 458, 662, 708
BmrI ACTGGG 1 cut(s) 844
BmsI GCATC 4 cut(s) 75, 254, 291, 538
BmuI ACTGGG 1 cut(s) 844
BplI GAGNNNNNCTC 2 cut(s) 485, 517
BpmI CTGGAG 1 cut(s) 573
BpuMI CCSGG 1 cut(s) 390
Bsa29I ATCGAT 1 cut(s) 282
BsaAI YACGTR 1 cut(s) 791
BsaBI GATNNNNATC 3 cut(s) 230, 474, 480
BsaHI GRCGYC 1 cut(s) 724
BsaI GGTCTC 1 cut(s) 308
BsaJI CCNNGG 3 cut(s) 318, 465, 686
BsaXI ACNNNNNCTCC 2 cut(s) 796, 826
Bsc4I CCNNNNNNNGG 1 cut(s) 294
Bse1I ACTGG 2 cut(s) 205, 839
Bse8I GATNNNNATC 3 cut(s) 230, 474, 480
BseBI CCWGG 3 cut(s) 458, 662, 708
BseCI ATCGAT 1 cut(s) 282
BseDI CCNNGG 3 cut(s) 318, 465, 686
BseGI GGATG 1 cut(s) 475
BseJI GATNNNNATC 3 cut(s) 230, 474, 480
BseLI CCNNNNNNNGG 1 cut(s) 294
BseMII CTCAG 2 cut(s) 441, 814
BseNI ACTGG 2 cut(s) 205, 839
BseXI GCAGC 2 cut(s) 108, 397
BseYI CCCAGC 3 cut(s) 124, 760, 851
BshFI GGCC 2 cut(s) 215, 878
BshNI GGYRCC 1 cut(s) 108
BshVI ATCGAT 1 cut(s) 282
BsiSI CCGG 1 cut(s) 389
BsiWI CGTACG 1 cut(s) 235
BslFI GGGAC 4 cut(s) 431, 630, 777, 854
BslI CCNNNNNNNGG 1 cut(s) 294
BsmAI GTCTC 2 cut(s) 308, 731
BsmBI CGTCTC 1 cut(s) 731
BsmFI GGGAC 4 cut(s) 431, 630, 777, 854
BsnI GGCC 2 cut(s) 215, 878
Bso31I GGTCTC 1 cut(s) 308
Bsp143I GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
Bsp19I CCATGG 1 cut(s) 686
BspANI GGCC 2 cut(s) 215, 878
BspCNI CTCAG 2 cut(s) 442, 813
BspDI ATCGAT 1 cut(s) 282
BspLI GGNNCC 2 cut(s) 110, 342
BspMI ACCTGC 1 cut(s) 161
BspPI GGATC 5 cut(s) 358, 363, 417, 483, 672
BspT107I GGYRCC 1 cut(s) 108
BspTNI GGTCTC 1 cut(s) 308
BsrI ACTGG 2 cut(s) 205, 839
BssECI CCNNGG 3 cut(s) 318, 465, 686
BssMI GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
BssNI GRCGYC 1 cut(s) 724
BssT1I CCWWGG 3 cut(s) 318, 465, 686
Bst2UI CCWGG 3 cut(s) 458, 662, 708
Bst4CI ACNGT 2 cut(s) 608, 718
BstACI GRCGYC 1 cut(s) 724
BstBAI YACGTR 1 cut(s) 791
BstC8I GCNNGC 2 cut(s) 11, 772
BstDEI CTNAG 3 cut(s) 450, 780, 800
BstDSI CCRYGG 1 cut(s) 686
BstF5I GGATG 1 cut(s) 475
BstKTI GATC 9 cut(s) 295, 353, 358, 370, 399, 412, 478, 537, 667
BstMAI GTCTC 2 cut(s) 308, 731
BstMBI GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
BstNI CCWGG 3 cut(s) 458, 662, 708
BstNSI RCATGY 2 cut(s) 13, 774
BstSCI CCNGG 4 cut(s) 388, 456, 660, 706
BstV1I GCAGC 2 cut(s) 108, 397
BstX2I RGATCY 3 cut(s) 355, 409, 475
BstYI RGATCY 3 cut(s) 355, 409, 475
Bsu15I ATCGAT 1 cut(s) 282
BsuRI GGCC 2 cut(s) 215, 878
BsuTUI ATCGAT 1 cut(s) 282
BtgI CCRYGG 1 cut(s) 686
BtsCI GGATG 1 cut(s) 475
BtsI GCAGTG 1 cut(s) 142
BtsIMutI CAGTG 4 cut(s) 142, 423, 613, 832
BveI ACCTGC 1 cut(s) 161
Cac8I GCNNGC 2 cut(s) 11, 772
Cfr13I GGNCC 2 cut(s) 214, 454
ClaI ATCGAT 1 cut(s) 282
CseI GACGC 1 cut(s) 713
CsiI ACCWGGT 1 cut(s) 706
Csp6I GTAC 3 cut(s) 198, 236, 788
CviAII CATG 5 cut(s) 10, 167, 687, 771, 894
CviQI GTAC 3 cut(s) 198, 236, 788
DdeI CTNAG 3 cut(s) 450, 780, 800
DpnI GATC 9 cut(s) 294, 352, 357, 369, 398, 411, 477, 536, 666
DpnII GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
DraI TTTAAA 1 cut(s) 522
Eco130I CCWWGG 3 cut(s) 318, 465, 686
Eco31I GGTCTC 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 454
Eco57I CTGAAG 2 cut(s) 165, 447
EcoRII CCWGG 3 cut(s) 456, 660, 706
EcoT14I CCWWGG 3 cut(s) 318, 465, 686
ErhI CCWWGG 3 cut(s) 318, 465, 686
Esp3I CGTCTC 1 cut(s) 731
FaeI CATG 5 cut(s) 13, 170, 690, 774, 897
FaqI GGGAC 4 cut(s) 431, 630, 777, 854
FatI CATG 5 cut(s) 9, 166, 686, 770, 893
FbaI TGATCA 2 cut(s) 367, 396
Fnu4HI GCNGC 2 cut(s) 122, 386
FokI GGATG 1 cut(s) 482
Fsp4HI GCNGC 2 cut(s) 122, 386
FspBI CTAG 1 cut(s) 692
GluI GCNGC 2 cut(s) 122, 386
GsaI CCCAGC 3 cut(s) 128, 764, 855
GsuI CTGGAG 1 cut(s) 573
HaeIII GGCC 2 cut(s) 215, 878
HapII CCGG 1 cut(s) 389
HgaI GACGC 1 cut(s) 713
Hin1I GRCGYC 1 cut(s) 724
Hin1II CATG 5 cut(s) 13, 170, 690, 774, 897
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 6 cut(s) 163, 275, 284, 431, 446, 481
HpaII CCGG 1 cut(s) 389
HphI GGTGA 1 cut(s) 521
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 9 cut(s) 45, 225, 297, 355, 436, 451, 480, 505, 534
Hpy188III TCNNGA 3 cut(s) 143, 361, 802
Hpy8I GTNNAC 1 cut(s) 512
HpyAV CCTTC 4 cut(s) 24, 626, 632, 889
HpyCH4III ACNGT 2 cut(s) 608, 718
HpyCH4IV ACGT 2 cut(s) 238, 790
HpyCH4V TGCA 5 cut(s) 66, 97, 170, 744, 770
HpyF3I CTNAG 3 cut(s) 450, 780, 800
HpySE526I ACGT 2 cut(s) 238, 790
Hsp92I GRCGYC 1 cut(s) 724
Hsp92II CATG 5 cut(s) 13, 170, 690, 774, 897
Ksp22I TGATCA 2 cut(s) 367, 396
Kzo9I GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
Lsp1109I GCAGC 2 cut(s) 108, 397
LweI GCATC 4 cut(s) 75, 254, 291, 538
MabI ACCWGGT 1 cut(s) 706
MaeI CTAG 1 cut(s) 692
MaeII ACGT 2 cut(s) 238, 790
MaeIII GTNAC 1 cut(s) 830
MalI GATC 9 cut(s) 294, 352, 357, 369, 398, 411, 477, 536, 666
MboI GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
MflI RGATCY 3 cut(s) 355, 409, 475
MluCI AATT 4 cut(s) 188, 219, 515, 886
MlyI GAGTC 1 cut(s) 157
MnlI CCTC 6 cut(s) 94, 111, 430, 445, 466, 798
MseI TTAA 5 cut(s) 29, 50, 191, 521, 696
MspI CCGG 1 cut(s) 389
MspR9I CCNGG 4 cut(s) 390, 458, 662, 708
MvaI CCWGG 3 cut(s) 458, 662, 708
NciI CCSGG 1 cut(s) 390
NcoI CCATGG 1 cut(s) 686
NdeII GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
NlaIII CATG 5 cut(s) 13, 170, 690, 774, 897
NlaIV GGNNCC 2 cut(s) 110, 342
NmuCI GTSAC 1 cut(s) 830
NspI RCATGY 2 cut(s) 13, 774
PaeI GCATGC 2 cut(s) 13, 774
PfeI GAWTC 5 cut(s) 275, 284, 431, 446, 481
Pfl23II CGTACG 1 cut(s) 235
PkrI GCNGC 2 cut(s) 123, 387
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
Ppu21I YACGTR 1 cut(s) 791
Psp6I CCWGG 3 cut(s) 456, 660, 706
PspFI CCCAGC 3 cut(s) 124, 760, 851
PspGI CCWGG 3 cut(s) 456, 660, 706
PspLI CGTACG 1 cut(s) 235
PspN4I GGNNCC 2 cut(s) 110, 342
PspPI GGNCC 2 cut(s) 214, 454
PsrI GAACNNNNNNTAC 2 cut(s) 780, 812
PsuI RGATCY 3 cut(s) 355, 409, 475
RsaI GTAC 3 cut(s) 199, 237, 789
RsaNI GTAC 3 cut(s) 198, 236, 788
SaqAI TTAA 5 cut(s) 29, 50, 191, 521, 696
SatI GCNGC 2 cut(s) 122, 386
Sau3AI GATC 9 cut(s) 292, 350, 355, 367, 396, 409, 475, 534, 664
Sau96I GGNCC 2 cut(s) 214, 454
SchI GAGTC 1 cut(s) 157
ScrFI CCNGG 4 cut(s) 390, 458, 662, 708
SexAI ACCWGGT 1 cut(s) 706
SfaNI GCATC 4 cut(s) 75, 254, 291, 538
SinI GGWCC 1 cut(s) 454
SphI GCATGC 2 cut(s) 13, 774
Sse9I AATT 4 cut(s) 188, 219, 515, 886
SspMI CTAG 1 cut(s) 692
StyD4I CCNGG 4 cut(s) 388, 456, 660, 706
StyI CCWWGG 3 cut(s) 318, 465, 686
TaaI ACNGT 2 cut(s) 608, 718
TaiI ACGT 2 cut(s) 241, 793
TaqI TCGA 1 cut(s) 282
TasI AATT 4 cut(s) 188, 219, 515, 886
TfiI GAWTC 5 cut(s) 275, 284, 431, 446, 481
Tru1I TTAA 5 cut(s) 29, 50, 191, 521, 696
Tru9I TTAA 5 cut(s) 29, 50, 191, 521, 696
TscAI CASTG 4 cut(s) 142, 430, 613, 839
TseFI GTSAC 1 cut(s) 830
TseI GCWGC 2 cut(s) 121, 385
Tsp45I GTSAC 1 cut(s) 830
TspDTI ATGAA 2 cut(s) 17, 251
TspGWI ACGGA 1 cut(s) 557
TspRI CASTG 4 cut(s) 142, 430, 613, 839
VpaK11BI GGWCC 1 cut(s) 454
XapI RAATTY 1 cut(s) 219
XceI RCATGY 2 cut(s) 13, 774
XspI CTAG 1 cut(s) 692
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.