RLG00000013563

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000653
Physical Location & Seq
Reverse (-)
33207861 .. 33208538
678 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000013563

Sequence Viewer

Length: 678 bp
ATGGTAAGTACATCCCTAGTACGAAAGCACAGAGCTGCCGAGTTCTCTAAGATGAGAAGGGAGCTGAAGAGACAAAGAAGAAAGCTCGAGACACTGAATCTGAGCGACAAAGTCGAAGTCGAATCTAAACCAAAGCAAAAAACCGACGAGAAATTATATTTTACGGACAAGGAATATGCAAGTAGGCGCTTGATTATACCAGAGGACGAAGCAGCCGAGTTCGCGGCGCAGGAGAGAAGGAGATGGAAGAAGGAAAATAGAAAGCTCCACATACCGAATCTGAACAACAGAGCCGAAGTCGCGGCGCTTCGGAAAAGGCTTCAAAGAAAGACAACCTCTGACCTTACAATAAAAGAAGACGGAGAAGTAAAAGATTATGAATATGGCTGTGGCGTTTGTGCTAACATGGATGAGAATCACTATGATTGGGACTGCCCATGGCTAGATAAACTGCCACCAGACCAAACTATTGTTGGCCCTTACTATGACATAGTTTGCATCGGCTGTGGCCAGATTGGTGAGCTGTGCTGTTCCAAGAGAGGTTCCAAGCGAGGATATGCTGTTCTCAAGTCCTGTATATATTGTCATTCAGCTGGTCACTGGCCTTGGGAATGCCTCACTGGCCTCAAGATTCTGGGGCTCACGGAGGAGCTCATCAAGGAAGTCATATCCTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

226

Amino Acids

26.14

Weight (kDa)

8.82

Isoelectric Point (pI)

52.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 224, 302
AciI CCGC 2 cut(s) 224, 302
AcoI YGGCCR 1 cut(s) 508
AcuI CTGAAG 1 cut(s) 86
AfaI GTAC 2 cut(s) 10, 21
AgsI TTSAA 1 cut(s) 323
AloI GAACNNNNNNTCC 2 cut(s) 546, 578
AluBI AGCT 7 cut(s) 35, 64, 85, 265, 523, 593, 652
AluI AGCT 7 cut(s) 35, 64, 85, 265, 523, 593, 652
Alw21I GWGCWC 1 cut(s) 654
Alw26I GTCTC 2 cut(s) 64, 83
Ama87I CYCGRG 1 cut(s) 86
AoxI GGCC 4 cut(s) 475, 508, 602, 622
ApeKI GCWGC 2 cut(s) 35, 212
ArsI GACNNNNNNTTYG 2 cut(s) 102, 134
AspLEI GCGC 3 cut(s) 189, 229, 307
AspS9I GGNCC 1 cut(s) 476
AsuHPI GGTGA 1 cut(s) 530
AvaI CYCGRG 1 cut(s) 86
BalI TGGCCA 1 cut(s) 510
BanII GRGCYC 2 cut(s) 642, 654
BbsI GAAGAC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 22, 224
BccI CCATC 1 cut(s) 237
BcoDI GTCTC 2 cut(s) 64, 83
BfaI CTAG 2 cut(s) 17, 443
BfoI RGCGCY 2 cut(s) 190, 308
BglI GCCNNNNNGGC 1 cut(s) 621
BisI GCNGC 4 cut(s) 36, 213, 225, 303
BlsI GCNGC 4 cut(s) 37, 214, 226, 304
BmeT110I CYCGRG 1 cut(s) 86
BmgT120I GGNCC 1 cut(s) 476
BmiI GGNNCC 1 cut(s) 544
BmsI GCATC 1 cut(s) 507
BpiI GAAGAC 1 cut(s) 363
BpuEI CTTGAG 2 cut(s) 551, 611
BsaBI GATNNNNATC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 437, 605
Bse1I ACTGG 2 cut(s) 605, 625
Bse8I GATNNNNATC 1 cut(s) 414
BseDI CCNNGG 2 cut(s) 437, 605
BseGI GGATG 2 cut(s) 11, 415
BseJI GATNNNNATC 1 cut(s) 414
BseMII CTCAG 1 cut(s) 92
BseNI ACTGG 2 cut(s) 605, 625
BseRI GAGGAG 1 cut(s) 662
BseXI GCAGC 2 cut(s) 22, 224
Bsh1236I CGCG 2 cut(s) 224, 302
BshFI GGCC 4 cut(s) 477, 510, 604, 624
BsiHKAI GWGCWC 1 cut(s) 654
BsiHKCI CYCGRG 1 cut(s) 86
BslFI GGGAC 1 cut(s) 443
BsmAI GTCTC 2 cut(s) 64, 83
BsmFI GGGAC 1 cut(s) 443
BsmI GAATGC 1 cut(s) 617
BsnI GGCC 4 cut(s) 477, 510, 604, 624
BsoBI CYCGRG 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 642, 654
Bsp19I CCATGG 1 cut(s) 437
BspACI CCGC 2 cut(s) 224, 302
BspANI GGCC 4 cut(s) 477, 510, 604, 624
BspCNI CTCAG 1 cut(s) 93
BspFNI CGCG 2 cut(s) 224, 302
BspLI GGNNCC 1 cut(s) 544
BsrI ACTGG 2 cut(s) 605, 625
BssECI CCNNGG 2 cut(s) 437, 605
BssT1I CCWWGG 2 cut(s) 437, 605
Bst6I CTCTTC 1 cut(s) 62
BstDEI CTNAG 2 cut(s) 48, 101
BstDSI CCRYGG 1 cut(s) 437
BstF5I GGATG 2 cut(s) 11, 415
BstFNI CGCG 2 cut(s) 224, 302
BstH2I RGCGCY 2 cut(s) 190, 308
BstHHI GCGC 3 cut(s) 189, 229, 307
BstMAI GTCTC 2 cut(s) 64, 83
BstMWI GCNNNNNNNGC 3 cut(s) 221, 299, 621
BstUI CGCG 2 cut(s) 224, 302
BstV1I GCAGC 2 cut(s) 22, 224
BstV2I GAAGAC 1 cut(s) 363
BsuRI GGCC 4 cut(s) 477, 510, 604, 624
BtgI CCRYGG 1 cut(s) 437
BtsCI GGATG 2 cut(s) 11, 415
BtsIMutI CAGTG 3 cut(s) 92, 598, 618
CfoI GCGC 3 cut(s) 189, 229, 307
Cfr13I GGNCC 1 cut(s) 476
Csp6I GTAC 2 cut(s) 9, 20
CviAII CATG 2 cut(s) 406, 438
CviQI GTAC 2 cut(s) 9, 20
DdeI CTNAG 2 cut(s) 48, 101
EaeI YGGCCR 1 cut(s) 508
Eam1104I CTCTTC 1 cut(s) 62
EarI CTCTTC 1 cut(s) 62
Ecl136II GAGCTC 1 cut(s) 652
Eco130I CCWWGG 2 cut(s) 437, 605
Eco24I GRGCYC 2 cut(s) 642, 654
Eco53kI GAGCTC 1 cut(s) 652
Eco57I CTGAAG 1 cut(s) 86
Eco88I CYCGRG 1 cut(s) 86
EcoICRI GAGCTC 1 cut(s) 652
EcoT14I CCWWGG 2 cut(s) 437, 605
EcoT38I GRGCYC 2 cut(s) 642, 654
ErhI CCWWGG 2 cut(s) 437, 605
FaeI CATG 2 cut(s) 409, 441
FaqI GGGAC 1 cut(s) 443
FatI CATG 2 cut(s) 405, 437
Fnu4HI GCNGC 4 cut(s) 36, 213, 225, 303
FokI GGATG 1 cut(s) 422
FriOI GRGCYC 2 cut(s) 642, 654
Fsp4HI GCNGC 4 cut(s) 36, 213, 225, 303
FspBI CTAG 2 cut(s) 17, 443
GlaI GCGC 3 cut(s) 188, 228, 306
GluI GCNGC 4 cut(s) 36, 213, 225, 303
HaeII RGCGCY 2 cut(s) 190, 308
HaeIII GGCC 4 cut(s) 477, 510, 604, 624
HhaI GCGC 3 cut(s) 189, 229, 307
Hin1II CATG 2 cut(s) 409, 441
Hin6I GCGC 3 cut(s) 187, 227, 305
HinP1I GCGC 3 cut(s) 187, 227, 305
HinfI GANTC 5 cut(s) 97, 122, 277, 415, 631
HphI GGTGA 1 cut(s) 530
Hpy188I TCNGA 4 cut(s) 102, 282, 312, 340
Hpy188III TCNNGA 3 cut(s) 88, 628, 675
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 3 cut(s) 51, 231, 244
HpyCH4V TGCA 2 cut(s) 179, 498
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 299, 621
HpyF3I CTNAG 2 cut(s) 48, 101
Hsp92II CATG 2 cut(s) 409, 441
HspAI GCGC 3 cut(s) 187, 227, 305
LmnI GCTCC 3 cut(s) 61, 270, 649
LpnPI CCDG 9 cut(s) 213, 215, 471, 524, 579, 586, 586, 606, 620
Lsp1109I GCAGC 2 cut(s) 22, 224
LweI GCATC 1 cut(s) 507
MaeI CTAG 2 cut(s) 17, 443
MaeIII GTNAC 1 cut(s) 596
MboII GAAGA 4 cut(s) 79, 90, 259, 368
MhlI GDGCHC 2 cut(s) 642, 654
MlsI TGGCCA 1 cut(s) 510
MluCI AATT 1 cut(s) 152
MluNI TGGCCA 1 cut(s) 510
MnlI CCTC 7 cut(s) 196, 346, 533, 545, 626, 635, 640
Mox20I TGGCCA 1 cut(s) 510
MscI TGGCCA 1 cut(s) 510
Msp20I TGGCCA 1 cut(s) 510
MspA1I CMGCKG 1 cut(s) 593
Mva1269I GAATGC 1 cut(s) 617
MvnI CGCG 2 cut(s) 224, 302
MwoI GCNNNNNNNGC 3 cut(s) 221, 299, 621
NcoI CCATGG 1 cut(s) 437
NlaIII CATG 2 cut(s) 409, 441
NlaIV GGNNCC 1 cut(s) 544
NmeAIII GCCGAG 2 cut(s) 64, 241
NmuCI GTSAC 1 cut(s) 596
PaeR7I CTCGAG 1 cut(s) 86
PcsI WCGNNNNNNNCGW 1 cut(s) 213
PctI GAATGC 1 cut(s) 617
PfeI GAWTC 5 cut(s) 97, 122, 277, 415, 631
PflFI GACNNNGTC 1 cut(s) 110
PkrI GCNGC 4 cut(s) 37, 214, 226, 304
Psp124BI GAGCTC 1 cut(s) 654
PspN4I GGNNCC 1 cut(s) 544
PspPI GGNCC 1 cut(s) 476
PsyI GACNNNGTC 1 cut(s) 110
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 2 cut(s) 10, 21
RsaNI GTAC 2 cut(s) 9, 20
SacI GAGCTC 1 cut(s) 654
SatI GCNGC 4 cut(s) 36, 213, 225, 303
Sau96I GGNCC 1 cut(s) 476
SduI GDGCHC 2 cut(s) 642, 654
SfaNI GCATC 1 cut(s) 507
Sfr274I CTCGAG 1 cut(s) 86
SlaI CTCGAG 1 cut(s) 86
SmlI CTYRAG 3 cut(s) 86, 566, 626
SmoI CTYRAG 3 cut(s) 86, 566, 626
Sse9I AATT 1 cut(s) 152
SsiI CCGC 2 cut(s) 224, 302
SspMI CTAG 2 cut(s) 17, 443
SstI GAGCTC 1 cut(s) 654
StyI CCWWGG 2 cut(s) 437, 605
TaqI TCGA 3 cut(s) 87, 114, 120
TasI AATT 1 cut(s) 152
TatI WGTACW 1 cut(s) 8
TauI GCSGC 2 cut(s) 227, 305
TfiI GAWTC 5 cut(s) 97, 122, 277, 415, 631
TscAI CASTG 3 cut(s) 99, 605, 625
TseFI GTSAC 1 cut(s) 596
TseI GCWGC 2 cut(s) 35, 212
Tsp45I GTSAC 1 cut(s) 596
TspDTI ATGAA 1 cut(s) 393
TspGWI ACGGA 3 cut(s) 179, 375, 659
TspRI CASTG 3 cut(s) 99, 605, 625
Tth111I GACNNNGTC 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 470
XhoI CTCGAG 1 cut(s) 86
XspI CTAG 2 cut(s) 17, 443
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.