Rh1DG420100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000653
Physical Location & Seq
Forward (+)
63467248 .. 63467881
634 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG420100.1

Sequence Viewer

Length: 465 bp
ATGCAAACAGGAAAAGTAAATCTACTTTCATTACTGAAATCTATAAAAGGCCCAATTCCCTGTATATTTTACCCTAATACCACCAGCAAAGCTCCCAAGCCCCAAAGTTATGTCGTAGATTCAGGCGTCCGCTCAAAATACGACGTAGAGGAGATCGTGAGGCTGAAGAAGAGGAAACCTGTCGTAAAAGAAATCGATGAAGATGGCTGTCCCGTCTGCGGTGACAAAAATCACTTTCAAAATGAATGCCCATGCCTAGACAAAATCCCACCGGGTCTAGTTCTTGATCCTGTATATGACGAAGTTTGCATTGGTTGTGGCAAAATTGGAGAGATCTGCTGTTCCAAGGGAGCATATGCTGTTGTCAAGAGGTGTGGTCTTTGTATGGCTATAGGTCACTGGTACTGGGACGACAAGTGCTCGAAGAACTGCCACCGGCCCCCCTGGATAGCAGAGATTCCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.13

Weight (kDa)

8.38

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 132
AciI CCGC 2 cut(s) 130, 219
AclWI GGATC 1 cut(s) 281
AcuI CTGAAG 1 cut(s) 185
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 1 cut(s) 404
AfiI CCNNNNNNNGG 1 cut(s) 218
AgsI TTSAA 1 cut(s) 239
AjnI CCWGG 1 cut(s) 443
AjuI GAANNNNNNNTTGG 2 cut(s) 294, 326
AluBI AGCT 1 cut(s) 92
AluI AGCT 1 cut(s) 92
Alw21I GWGCWC 1 cut(s) 422
AlwI GGATC 1 cut(s) 281
AoxI GGCC 2 cut(s) 49, 437
AspS9I GGNCC 2 cut(s) 50, 438
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 422
BccI CCATC 1 cut(s) 197
BciT130I CCWGG 1 cut(s) 445
BcnI CCSGG 1 cut(s) 273
BfaI CTAG 2 cut(s) 257, 278
BfmI CTRYAG 1 cut(s) 390
BglII AGATCT 1 cut(s) 333
Bme1390I CCNGG 2 cut(s) 273, 445
BmgT120I GGNCC 2 cut(s) 50, 438
BmiI GGNNCC 1 cut(s) 440
BmrFI CCNGG 2 cut(s) 273, 445
BmrI ACTGGG 1 cut(s) 415
BmuI ACTGGG 1 cut(s) 415
BpuMI CCSGG 1 cut(s) 273
Bsa29I ATCGAT 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 345, 443
Bsc4I CCNNNNNNNGG 1 cut(s) 218
Bse118I RCCGGY 1 cut(s) 435
Bse1I ACTGG 2 cut(s) 404, 410
BseBI CCWGG 1 cut(s) 445
BseCI ATCGAT 1 cut(s) 195
BseDI CCNNGG 2 cut(s) 345, 443
BseLI CCNNNNNNNGG 1 cut(s) 218
BseNI ACTGG 2 cut(s) 404, 410
BseRI GAGGAG 1 cut(s) 164
BshFI GGCC 2 cut(s) 51, 439
BshVI ATCGAT 1 cut(s) 195
BsiHKAI GWGCWC 1 cut(s) 422
BsiSI CCGG 2 cut(s) 272, 436
BslFI GGGAC 2 cut(s) 195, 422
BslI CCNNNNNNNGG 1 cut(s) 218
BsmFI GGGAC 2 cut(s) 195, 422
BsmI GAATGC 1 cut(s) 251
BsnI GGCC 2 cut(s) 51, 439
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 3 cut(s) 153, 286, 333
BspACI CCGC 2 cut(s) 130, 219
BspANI GGCC 2 cut(s) 51, 439
BspDI ATCGAT 1 cut(s) 195
BspLI GGNNCC 1 cut(s) 440
BspPI GGATC 1 cut(s) 281
BsrBI CCGCTC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 435
BsrI ACTGG 2 cut(s) 404, 410
BssAI RCCGGY 1 cut(s) 435
BssECI CCNNGG 2 cut(s) 345, 443
BssMI GATC 3 cut(s) 153, 286, 333
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 1 cut(s) 345
Bst2UI CCWGG 1 cut(s) 445
Bst6I CTCTTC 1 cut(s) 164
BstACI GRCGYC 1 cut(s) 126
BstKTI GATC 3 cut(s) 156, 289, 336
BstMBI GATC 3 cut(s) 153, 286, 333
BstNI CCWGG 1 cut(s) 445
BstSCI CCNGG 2 cut(s) 271, 443
BstSFI CTRYAG 1 cut(s) 390
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
Bsu15I ATCGAT 1 cut(s) 195
BsuRI GGCC 2 cut(s) 51, 439
BsuTUI ATCGAT 1 cut(s) 195
BtsIMutI CAGTG 1 cut(s) 397
Cfr10I RCCGGY 1 cut(s) 435
Cfr13I GGNCC 2 cut(s) 50, 438
ClaI ATCGAT 1 cut(s) 195
CseI GACGC 1 cut(s) 115
Csp6I GTAC 1 cut(s) 403
CspCI CAANNNNNGTGG 2 cut(s) 355, 390
CviAII CATG 1 cut(s) 252
CviJI RGCY 7 cut(s) 51, 92, 100, 163, 207, 389, 439
CviKI_1 RGCY 7 cut(s) 51, 92, 100, 163, 207, 389, 439
CviQI GTAC 1 cut(s) 403
DpnI GATC 3 cut(s) 155, 288, 335
DpnII GATC 3 cut(s) 153, 286, 333
Eam1104I CTCTTC 1 cut(s) 164
EarI CTCTTC 1 cut(s) 164
Eco130I CCWWGG 1 cut(s) 345
Eco57I CTGAAG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 345
ErhI CCWWGG 1 cut(s) 345
FaeI CATG 1 cut(s) 255
FaqI GGGAC 2 cut(s) 195, 422
FatI CATG 1 cut(s) 251
FauNDI CATATG 1 cut(s) 355
FspBI CTAG 2 cut(s) 257, 278
HaeIII GGCC 2 cut(s) 51, 439
HapII CCGG 2 cut(s) 272, 436
HgaI GACGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 1 cut(s) 255
HinfI GANTC 2 cut(s) 119, 457
HpaII CCGG 2 cut(s) 272, 436
HphI GGTGA 1 cut(s) 233
Hpy188III TCNNGA 3 cut(s) 157, 284, 367
Hpy99I CGWCG 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 2 cut(s) 4, 309
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 1 cut(s) 255
Kzo9I GATC 3 cut(s) 153, 286, 333
LmnI GCTCC 2 cut(s) 97, 350
MaeI CTAG 2 cut(s) 257, 278
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 221, 395
MalI GATC 3 cut(s) 155, 288, 335
MbiI CCGCTC 1 cut(s) 132
MboI GATC 3 cut(s) 153, 286, 333
MboII GAAGA 4 cut(s) 178, 181, 212, 436
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 2 cut(s) 54, 324
MnlI CCTC 4 cut(s) 142, 153, 165, 363
MspI CCGG 2 cut(s) 272, 436
MspR9I CCNGG 2 cut(s) 273, 445
Mva1269I GAATGC 1 cut(s) 251
MvaI CCWGG 1 cut(s) 445
NciI CCSGG 1 cut(s) 273
NdeI CATATG 1 cut(s) 355
NdeII GATC 3 cut(s) 153, 286, 333
NlaIII CATG 1 cut(s) 255
NlaIV GGNNCC 1 cut(s) 440
NmuCI GTSAC 2 cut(s) 221, 395
PctI GAATGC 1 cut(s) 251
PfeI GAWTC 2 cut(s) 119, 457
Psp6I CCWGG 1 cut(s) 443
PspGI CCWGG 1 cut(s) 443
PspN4I GGNNCC 1 cut(s) 440
PspPI GGNCC 2 cut(s) 50, 438
PsuI RGATCY 1 cut(s) 333
RsaI GTAC 1 cut(s) 404
RsaNI GTAC 1 cut(s) 403
Sau3AI GATC 3 cut(s) 153, 286, 333
Sau96I GGNCC 2 cut(s) 50, 438
ScrFI CCNGG 2 cut(s) 273, 445
SduI GDGCHC 1 cut(s) 422
SetI ASST 5 cut(s) 94, 147, 181, 374, 397
SfcI CTRYAG 1 cut(s) 390
Sse9I AATT 2 cut(s) 54, 324
SsiI CCGC 2 cut(s) 130, 219
SspMI CTAG 2 cut(s) 257, 278
StyD4I CCNGG 2 cut(s) 271, 443
StyI CCWWGG 1 cut(s) 345
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 195, 422
TasI AATT 2 cut(s) 54, 324
TfiI GAWTC 2 cut(s) 119, 457
TscAI CASTG 1 cut(s) 404
TseFI GTSAC 2 cut(s) 221, 395
Tsp45I GTSAC 2 cut(s) 221, 395
TspDTI ATGAA 3 cut(s) 18, 213, 258
TspGWI ACGGA 1 cut(s) 450
TspRI CASTG 1 cut(s) 404
XspI CTAG 2 cut(s) 257, 278
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.