Rmu_sc0006867.1_g000011

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
OG0000653
Physical Location & Seq
Forward (+)
61074 .. 62921
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006867.1_g000011.1.cds

Sequence Viewer

Length: 390 bp
atggaggagaggacgaagatgatgacggacggcagacagaggcacgcaagcagaaggaagaaacctctccaaagctcagaagtctcccaagctcatgaagaaccatcaagctgccaaatagccgcctgcccattcctaaaatatattcctgaaggcgctaaaattggctgtggctttgagacgatatgccggggttgtcaccatattggaaaggtgtgctgtgttaagagggggaagtctgtgggaggatatgctaagctaaagaggtgtgcttattgtttctgtattggtcactgggagtgggacgactgtgaagattgtcctagacccaaggacgtcgtctttgagaaagatgaatacttcgatggggatgggatttcctcagagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

129

Amino Acids

14.6

Weight (kDa)

7.49

Isoelectric Point (pI)

59.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 339
AciI CCGC 1 cut(s) 123
AcuI CTGAAG 1 cut(s) 171
AcyI GRCGYC 1 cut(s) 336
AluBI AGCT 4 cut(s) 75, 92, 111, 259
AluI AGCT 4 cut(s) 75, 92, 111, 259
Alw26I GTCTC 2 cut(s) 88, 173
ApeKI GCWGC 1 cut(s) 111
ArsI GACNNNNNNTTYG 2 cut(s) 326, 358
AspLEI GCGC 1 cut(s) 158
AsuC2I CCSGG 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 191
BbvI GCAGC 1 cut(s) 98
BccI CCATC 3 cut(s) 112, 359, 365
BceAI ACGGC 1 cut(s) 46
BcnI CCSGG 1 cut(s) 191
BcoDI GTCTC 2 cut(s) 88, 173
BfaI CTAG 1 cut(s) 324
BfoI RGCGCY 1 cut(s) 159
BisI GCNGC 2 cut(s) 112, 123
BlpI GCTNAGC 1 cut(s) 255
BlsI GCNGC 2 cut(s) 113, 124
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BmrI ACTGGG 1 cut(s) 304
BmuI ACTGGG 1 cut(s) 304
Bpu1102I GCTNAGC 1 cut(s) 255
BpuMI CCSGG 1 cut(s) 191
BsaHI GRCGYC 1 cut(s) 336
BsaJI CCNNGG 2 cut(s) 190, 330
Bse1I ACTGG 1 cut(s) 299
BseDI CCNNGG 2 cut(s) 190, 330
BseGI GGATG 1 cut(s) 376
BseMII CTCAG 1 cut(s) 90
BseNI ACTGG 1 cut(s) 299
BseRI GAGGAG 1 cut(s) 20
BseXI GCAGC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 317
BsmAI GTCTC 2 cut(s) 88, 173
BsmBI CGTCTC 1 cut(s) 173
BsmFI GGGAC 1 cut(s) 317
Bsp1720I GCTNAGC 1 cut(s) 255
BspACI CCGC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 89
BspHI TCATGA 1 cut(s) 94
BsrI ACTGG 1 cut(s) 299
BssECI CCNNGG 2 cut(s) 190, 330
BssNI GRCGYC 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 311
BstACI GRCGYC 1 cut(s) 336
BstC8I GCNNGC 3 cut(s) 45, 49, 127
BstDEI CTNAG 3 cut(s) 76, 255, 382
BstF5I GGATG 1 cut(s) 376
BstH2I RGCGCY 1 cut(s) 159
BstHHI GCGC 1 cut(s) 158
BstMAI GTCTC 2 cut(s) 88, 173
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 98
BtsCI GGATG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 292
Cac8I GCNNGC 3 cut(s) 45, 49, 127
CciI TCATGA 1 cut(s) 94
CfoI GCGC 1 cut(s) 158
CviAII CATG 1 cut(s) 95
CviJI RGCY 7 cut(s) 75, 92, 111, 122, 168, 174, 259
CviKI_1 RGCY 7 cut(s) 75, 92, 111, 122, 168, 174, 259
DdeI CTNAG 3 cut(s) 76, 255, 382
Eco130I CCWWGG 1 cut(s) 330
Eco57I CTGAAG 1 cut(s) 171
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
Esp3I CGTCTC 1 cut(s) 173
FaeI CATG 1 cut(s) 98
FaiI YATR 5 cut(s) 96, 144, 187, 204, 252
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 112, 123
FokI GGATG 1 cut(s) 383
Fsp4HI GCNGC 2 cut(s) 112, 123
FspBI CTAG 1 cut(s) 324
GlaI GCGC 1 cut(s) 157
GluI GCNGC 2 cut(s) 112, 123
HaeII RGCGCY 1 cut(s) 159
HapII CCGG 1 cut(s) 190
HhaI GCGC 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 336
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 156
HinP1I GCGC 1 cut(s) 156
HpaII CCGG 1 cut(s) 190
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 2 cut(s) 79, 385
Hpy188III TCNNGA 2 cut(s) 95, 149
Hpy99I CGWCG 1 cut(s) 341
HpyAV CCTTC 2 cut(s) 48, 146
HpyCH4III ACNGT 1 cut(s) 311
HpyCH4IV ACGT 1 cut(s) 336
HpyF3I CTNAG 3 cut(s) 76, 255, 382
HpySE526I ACGT 1 cut(s) 336
Hsp92I GRCGYC 1 cut(s) 336
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 156
LpnPI CCDG 4 cut(s) 139, 162, 203, 280
Lsp1109I GCAGC 1 cut(s) 98
MaeI CTAG 1 cut(s) 324
MaeII ACGT 1 cut(s) 336
MaeIII GTNAC 2 cut(s) 197, 290
MboII GAAGA 4 cut(s) 28, 70, 110, 326
MluCI AATT 1 cut(s) 162
MnlI CCTC 6 cut(s) 3, 33, 75, 222, 239, 258
MseI TTAA 1 cut(s) 225
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 191
NciI CCSGG 1 cut(s) 191
NlaIII CATG 1 cut(s) 98
NmuCI GTSAC 2 cut(s) 197, 290
PagI TCATGA 1 cut(s) 94
PflFI GACNNNGTC 1 cut(s) 338
PkrI GCNGC 2 cut(s) 113, 124
PsyI GACNNNGTC 1 cut(s) 338
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 2 cut(s) 112, 123
ScrFI CCNGG 1 cut(s) 191
SetI ASST 8 cut(s) 67, 77, 94, 113, 216, 261, 269, 339
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 123
SspMI CTAG 1 cut(s) 324
StyD4I CCNGG 1 cut(s) 189
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 311
TaiI ACGT 1 cut(s) 339
TaqI TCGA 1 cut(s) 363
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 299
TseFI GTSAC 2 cut(s) 197, 290
TseI GCWGC 1 cut(s) 111
Tsp45I GTSAC 2 cut(s) 197, 290
TspDTI ATGAA 2 cut(s) 111, 369
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 299
Tth111I GACNNNGTC 1 cut(s) 338
XspI CTAG 1 cut(s) 324
ZraI GACGTC 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.