FvH4_2g13180

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000335
Physical Location & Seq
Forward (+)
11530420 .. 11531496
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g13180.t1

Sequence Viewer

Length: 1077 bp
ATGGATAACTGTGAAGAGCTCATTCCAGAGTACCTTGGATTCGTTAAGGGTGTTGTTGACTCTGAAGACTTGCCACTCAACATCTCTCGTGAGATGCTTCAACAGAACAAGATTTTGAAGGTGATCAGGAAGAACCTTGTGAAGAAGTGCATTGAGATGTTCAATGAGATTGCTGAAAATAAAGAGGACTACACCAAGTTTTACGAGGCATTCTCCAAGAATTTGAAATTGGGTATTCATGAAGACAGCCAGAACAGAGCCAAATTAGCTGACCTTCTCCGGTACCACTCCACCAAGAGCGGTGAGGACCTGACAAGCCTGAAGGACTATATAACTAGAATGAAGGAGGGTCAGAAGGACATCTTCTATATAACTGGTGAGAGCAAGAAGGCTGTGGAGAACTCTCCATTCTTGGAGCGCCTGAAGAAGAAGGGCTATGAAGTGCTTTTCATGGTGGATGCGATTGATGAGTATGCTGTAGGTCAATTGAAGGAGTATGGTGGCAAGAAGTTGGTGTCTGCTACGAAGGAAGGACTGAAACTTGATGATGAAACCGAGGAGGAGAAGCAAAAGAGAGAAGAGAAGAAGAAATCCTTTGAGAATCTTTGCAAGACAATCAAGGGTATTTTGGGAGATAGGATTGAGAAAGCTGTTGTATCTGACAGAATTGTGGACTCCCCTTGCTGTTTGGTGACTGGTGAATACGGTTGGACTGCTAACATGGAAAGAATCATGAAGGCTCAGGCTCTTAGGGACAACAGCATGGGTGCATACATGTCTAGCAAGAAGACAATGGAGATCAATCCTGACAATGGAATCATGGAGGAGTTGAGGAAGAGGACCGAGGCTGATAAAAATGACAAGTCTGTCAAGGACCTTGTGCTGTTGCTGTTTGAGACTGCCCTCTTGACTTCTGGATTCAGCTTGGATGATCCCAACACTTTTGCGGCGAGAATCAACAGGATGTTGAAGCTGGGTCTCAGTATTGATGAGGATGAGACAGTTGGTGAAGATGCAGATATGCCTACTTTGGAGGAGGATGCTGCTGAAGAGAGCAAGGTGGAGGAGGTCGACTAA

Protein Analysis

359

Amino Acids

40.82

Weight (kDa)

4.95

Isoelectric Point (pI)

37.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 1 - 353 5.2e-166 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 866
Acc65I GGTACC 1 cut(s) 282
AccB1I GGYRCC 1 cut(s) 282
AccBSI CCGCTC 1 cut(s) 300
AccI GTMKAC 1 cut(s) 1071
AciI CCGC 2 cut(s) 300, 947
AclWI GGATC 1 cut(s) 926
AcsI RAATTY 1 cut(s) 220
AcuI CTGAAG 4 cut(s) 84, 341, 443, 1068
AfaI GTAC 2 cut(s) 32, 284
AfiI CCNNNNNNNGG 1 cut(s) 812
AflIII ACRYGT 1 cut(s) 774
AgsI TTSAA 6 cut(s) 101, 118, 163, 226, 490, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 212, 244
AluBI AGCT 5 cut(s) 19, 269, 650, 924, 973
AluI AGCT 5 cut(s) 19, 269, 650, 924, 973
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 3 cut(s) 890, 983, 992
AlwI GGATC 1 cut(s) 926
ApeKI GCWGC 1 cut(s) 1043
ApoI RAATTY 1 cut(s) 220
Asp718I GGTACC 1 cut(s) 282
AspLEI GCGC 1 cut(s) 420
AspS9I GGNCC 3 cut(s) 307, 840, 874
AsuHPI GGTGA 6 cut(s) 133, 314, 389, 703, 710, 1019
AvaII GGWCC 3 cut(s) 307, 840, 874
BanI GGYRCC 1 cut(s) 282
BanII GRGCYC 1 cut(s) 21
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 3 cut(s) 72, 249, 794
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 1 cut(s) 1030
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 3 cut(s) 890, 983, 992
BfaI CTAG 2 cut(s) 336, 780
BfmI CTRYAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 421
BisI GCNGC 2 cut(s) 948, 1044
BlsI GCNGC 2 cut(s) 949, 1045
Bme18I GGWCC 3 cut(s) 307, 840, 874
BmgT120I GGNCC 3 cut(s) 307, 840, 874
BmiI GGNNCC 1 cut(s) 284
BmsI GCATC 4 cut(s) 84, 448, 1003, 1030
BpiI GAAGAC 3 cut(s) 72, 249, 794
BplI GAGNNNNNCTC 2 cut(s) 197, 229
Bpu10I CCTNAGC 1 cut(s) 741
BsaI GGTCTC 1 cut(s) 983
BsaJI CCNNGG 3 cut(s) 34, 555, 843
BsaWI WCCGGW 1 cut(s) 279
Bsc4I CCNNNNNNNGG 1 cut(s) 812
Bse1I ACTGG 2 cut(s) 379, 700
BseDI CCNNGG 3 cut(s) 34, 555, 843
BseGI GGATG 5 cut(s) 463, 934, 969, 1000, 1045
BseLI CCNNNNNNNGG 1 cut(s) 812
BseMII CTCAG 2 cut(s) 755, 994
BseNI ACTGG 2 cut(s) 379, 700
BseRI GAGGAG 4 cut(s) 572, 575, 839, 1049
BseXI GCAGC 1 cut(s) 1030
BseYI CCCAGC 1 cut(s) 973
BshNI GGYRCC 1 cut(s) 282
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 767
BslI CCNNNNNNNGG 1 cut(s) 812
BsmAI GTCTC 3 cut(s) 890, 983, 992
BsmFI GGGAC 1 cut(s) 767
BsmI GAATGC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 983
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 123, 798, 931
BspACI CCGC 2 cut(s) 300, 947
BspCNI CTCAG 2 cut(s) 754, 993
BspHI TCATGA 2 cut(s) 238, 732
BspLI GGNNCC 1 cut(s) 284
BspPI GGATC 1 cut(s) 926
BspQI GCTCTTC 1 cut(s) 9
BspT107I GGYRCC 1 cut(s) 282
BspTNI GGTCTC 1 cut(s) 983
BsrBI CCGCTC 1 cut(s) 300
BsrI ACTGG 2 cut(s) 379, 700
BssECI CCNNGG 3 cut(s) 34, 555, 843
BssMI GATC 3 cut(s) 123, 798, 931
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 1 cut(s) 34
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 3 cut(s) 11, 707, 1003
Bst6I CTCTTC 4 cut(s) 9, 573, 830, 1044
BstDEI CTNAG 3 cut(s) 741, 749, 980
BstF5I GGATG 5 cut(s) 463, 934, 969, 1000, 1045
BstH2I RGCGCY 1 cut(s) 421
BstHHI GCGC 1 cut(s) 420
BstKTI GATC 3 cut(s) 126, 801, 934
BstMAI GTCTC 3 cut(s) 890, 983, 992
BstMBI GATC 3 cut(s) 123, 798, 931
BstMWI GCNNNNNNNGC 1 cut(s) 266
BstNSI RCATGY 1 cut(s) 778
BstSFI CTRYAG 1 cut(s) 477
BstV1I GCAGC 1 cut(s) 1030
BstV2I GAAGAC 3 cut(s) 72, 249, 794
BtsCI GGATG 5 cut(s) 463, 934, 969, 1000, 1045
CciI TCATGA 2 cut(s) 238, 732
CfoI GCGC 1 cut(s) 420
Cfr13I GGNCC 3 cut(s) 307, 840, 874
Csp6I GTAC 2 cut(s) 31, 283
CviAII CATG 7 cut(s) 239, 451, 721, 733, 763, 775, 820
CviQI GTAC 2 cut(s) 31, 283
DdeI CTNAG 3 cut(s) 741, 749, 980
DpnI GATC 3 cut(s) 125, 800, 933
DpnII GATC 3 cut(s) 123, 798, 931
DrdI GACNNNNNNGTC 1 cut(s) 866
DseDI GACNNNNNNGTC 1 cut(s) 866
Eam1104I CTCTTC 4 cut(s) 9, 573, 830, 1044
EarI CTCTTC 4 cut(s) 9, 573, 830, 1044
Ecl136II GAGCTC 1 cut(s) 19
Eco130I CCWWGG 1 cut(s) 34
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 983
Eco47I GGWCC 3 cut(s) 307, 840, 874
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 4 cut(s) 84, 341, 443, 1068
EcoICRI GAGCTC 1 cut(s) 19
EcoO109I RGGNCCY 2 cut(s) 307, 874
EcoT14I CCWWGG 1 cut(s) 34
EcoT38I GRGCYC 1 cut(s) 21
ErhI CCWWGG 1 cut(s) 34
FaeI CATG 7 cut(s) 242, 454, 724, 736, 766, 778, 823
FalI AAGNNNNNCTT 4 cut(s) 347, 379, 578, 610
FaqI GGGAC 1 cut(s) 767
FatI CATG 7 cut(s) 238, 450, 720, 732, 762, 774, 819
FbaI TGATCA 1 cut(s) 123
FblI GTMKAC 1 cut(s) 1071
Fnu4HI GCNGC 2 cut(s) 948, 1044
FokI GGATG 5 cut(s) 470, 941, 976, 1007, 1052
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 2 cut(s) 948, 1044
FspBI CTAG 2 cut(s) 336, 780
GlaI GCGC 1 cut(s) 419
GluI GCNGC 2 cut(s) 948, 1044
GsaI CCCAGC 1 cut(s) 977
HaeII RGCGCY 1 cut(s) 421
HapII CCGG 1 cut(s) 280
HhaI GCGC 1 cut(s) 420
Hin1II CATG 7 cut(s) 242, 454, 724, 736, 766, 778, 823
Hin6I GCGC 1 cut(s) 418
HinP1I GCGC 1 cut(s) 418
HincII GTYRAC 2 cut(s) 58, 1072
HindII GTYRAC 2 cut(s) 58, 1072
HinfI GANTC 8 cut(s) 39, 59, 601, 674, 729, 816, 918, 954
HpaII CCGG 1 cut(s) 280
HphI GGTGA 6 cut(s) 133, 314, 389, 703, 710, 1019
Hpy166II GTNNAC 3 cut(s) 58, 673, 1072
Hpy188I TCNGA 3 cut(s) 64, 354, 661
Hpy188III TCNNGA 8 cut(s) 26, 89, 127, 239, 733, 806, 907, 915
Hpy8I GTNNAC 3 cut(s) 58, 673, 1072
HpyCH4III ACNGT 3 cut(s) 11, 707, 1003
HpyCH4V TGCA 4 cut(s) 150, 609, 770, 1016
HpyF10VI GCNNNNNNNGC 1 cut(s) 266
HpyF3I CTNAG 3 cut(s) 741, 749, 980
Hsp92II CATG 7 cut(s) 242, 454, 724, 736, 766, 778, 823
HspAI GCGC 1 cut(s) 418
KpnI GGTACC 1 cut(s) 286
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 3 cut(s) 123, 798, 931
LguI GCTCTTC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 415
Lsp1109I GCAGC 1 cut(s) 1030
LweI GCATC 4 cut(s) 84, 448, 1003, 1030
MaeI CTAG 2 cut(s) 336, 780
MaeIII GTNAC 1 cut(s) 691
MalI GATC 3 cut(s) 125, 800, 933
MbiI CCGCTC 1 cut(s) 300
MboI GATC 3 cut(s) 123, 798, 931
MfeI CAATTG 1 cut(s) 485
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 5 cut(s) 220, 227, 263, 485, 666
MlyI GAGTC 2 cut(s) 53, 668
MmeI TCCRAC 1 cut(s) 689
MseI TTAA 1 cut(s) 45
MslI CAYNNNNRTG 1 cut(s) 155
MspI CCGG 1 cut(s) 280
MunI CAATTG 1 cut(s) 485
Mva1269I GAATGC 1 cut(s) 209
MwoI GCNNNNNNNGC 1 cut(s) 266
NdeII GATC 3 cut(s) 123, 798, 931
NlaIII CATG 7 cut(s) 242, 454, 724, 736, 766, 778, 823
NlaIV GGNNCC 1 cut(s) 284
NmuCI GTSAC 1 cut(s) 691
NspI RCATGY 1 cut(s) 778
PagI TCATGA 2 cut(s) 238, 732
PciI ACATGT 1 cut(s) 774
PciSI GCTCTTC 1 cut(s) 9
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 6 cut(s) 39, 601, 729, 816, 918, 954
PkrI GCNGC 2 cut(s) 949, 1045
PleI GAGTC 2 cut(s) 53, 668
PpsI GAGTC 2 cut(s) 53, 668
PpuMI RGGWCCY 2 cut(s) 307, 874
PscI ACATGT 1 cut(s) 774
Psp124BI GAGCTC 1 cut(s) 21
Psp5II RGGWCCY 2 cut(s) 307, 874
PspFI CCCAGC 1 cut(s) 973
PspN4I GGNNCC 1 cut(s) 284
PspPI GGNCC 3 cut(s) 307, 840, 874
PspPPI RGGWCCY 2 cut(s) 307, 874
RsaI GTAC 2 cut(s) 32, 284
RsaNI GTAC 2 cut(s) 31, 283
RseI CAYNNNNRTG 1 cut(s) 155
SacI GAGCTC 1 cut(s) 21
SalI GTCGAC 1 cut(s) 1070
SapI GCTCTTC 1 cut(s) 9
SaqAI TTAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 948, 1044
Sau3AI GATC 3 cut(s) 123, 798, 931
Sau96I GGNCC 3 cut(s) 307, 840, 874
SchI GAGTC 2 cut(s) 53, 668
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 4 cut(s) 84, 448, 1003, 1030
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 307, 840, 874
SmiMI CAYNNNNRTG 1 cut(s) 155
Sse9I AATT 5 cut(s) 220, 227, 263, 485, 666
SsiI CCGC 2 cut(s) 300, 947
SspMI CTAG 2 cut(s) 336, 780
SstI GAGCTC 1 cut(s) 21
StyI CCWWGG 1 cut(s) 34
TaaI ACNGT 3 cut(s) 11, 707, 1003
TaqI TCGA 1 cut(s) 1071
TaqII GACCGA 1 cut(s) 857
TasI AATT 5 cut(s) 220, 227, 263, 485, 666
TauI GCSGC 1 cut(s) 950
TfiI GAWTC 6 cut(s) 39, 601, 729, 816, 918, 954
Tru1I TTAA 1 cut(s) 45
Tru9I TTAA 1 cut(s) 45
TseFI GTSAC 1 cut(s) 691
TseI GCWGC 1 cut(s) 1043
Tsp45I GTSAC 1 cut(s) 691
TspDTI ATGAA 7 cut(s) 227, 255, 356, 439, 453, 564, 749
VpaK11BI GGWCC 3 cut(s) 307, 840, 874
XapI RAATTY 1 cut(s) 220
XceI RCATGY 1 cut(s) 778
XmiI GTMKAC 1 cut(s) 1071
XspI CTAG 2 cut(s) 336, 780
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.