Rh1BG394800

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
51981191 .. 51981611
421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG394800.1

Sequence Viewer

Length: 261 bp
ATGGCTAATGTTTACATTGGTGATGATGCTGAGACATTCGCATTCCACGTAGAGATCAACCAGCTTCTTAGCTTGATCATCAATACTATTTACAGCAACAAAGAAATTTTCCTTGGTCAACTTATCAAAAATTCCAATGATGCCTTGGACAAAATTAGAGTCGAGAGCCTTACAGATAAGAACAAGCTTGATGCTCAACCGGAGCTTTTCATCAGGCTCGTCCCTGATAAGACCAACAATACCCTCTCCATCGATCATTGA

Protein Analysis

86

Amino Acids

9.77

Weight (kDa)

4.74

Isoelectric Point (pI)

19.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 105, 130
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 4 cut(s) 64, 72, 187, 205
AluI AGCT 4 cut(s) 64, 72, 187, 205
Alw26I GTCTC 1 cut(s) 26
ApoI RAATTY 2 cut(s) 105, 130
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AsuHPI GGTGA 1 cut(s) 32
BccI CCATC 1 cut(s) 257
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 26
BmsI GCATC 3 cut(s) 16, 130, 181
Bsa29I ATCGAT 1 cut(s) 252
BsaAI YACGTR 1 cut(s) 49
BsaJI CCNNGG 2 cut(s) 112, 144
BsaWI WCCGGW 1 cut(s) 199
BseCI ATCGAT 1 cut(s) 252
BseDI CCNNGG 2 cut(s) 112, 144
BseMII CTCAG 1 cut(s) 21
BshVI ATCGAT 1 cut(s) 252
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 206
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 206
BsmI GAATGC 1 cut(s) 41
Bsp143I GATC 3 cut(s) 54, 75, 253
BspCNI CTCAG 1 cut(s) 22
BspDI ATCGAT 1 cut(s) 252
BssECI CCNNGG 2 cut(s) 112, 144
BssMI GATC 3 cut(s) 54, 75, 253
BssT1I CCWWGG 2 cut(s) 112, 144
BstBAI YACGTR 1 cut(s) 49
BstDEI CTNAG 2 cut(s) 30, 68
BstKTI GATC 3 cut(s) 57, 78, 256
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 54, 75, 253
Bsu15I ATCGAT 1 cut(s) 252
BsuTUI ATCGAT 1 cut(s) 252
ClaI ATCGAT 1 cut(s) 252
CviJI RGCY 7 cut(s) 5, 64, 72, 168, 187, 205, 217
CviKI_1 RGCY 7 cut(s) 5, 64, 72, 168, 187, 205, 217
DdeI CTNAG 2 cut(s) 30, 68
DpnI GATC 3 cut(s) 56, 77, 255
DpnII GATC 3 cut(s) 54, 75, 253
Eco130I CCWWGG 2 cut(s) 112, 144
EcoT14I CCWWGG 2 cut(s) 112, 144
ErhI CCWWGG 2 cut(s) 112, 144
FaqI GGGAC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 75
HapII CCGG 1 cut(s) 200
HincII GTYRAC 1 cut(s) 119
HindII GTYRAC 1 cut(s) 119
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 1 cut(s) 159
HpaII CCGG 1 cut(s) 200
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 2 cut(s) 13, 119
Hpy188III TCNNGA 1 cut(s) 163
Hpy8I GTNNAC 2 cut(s) 13, 119
HpyCH4IV ACGT 1 cut(s) 48
HpyF3I CTNAG 2 cut(s) 30, 68
HpySE526I ACGT 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 3 cut(s) 54, 75, 253
LmnI GCTCC 1 cut(s) 202
LpnPI CCDG 4 cut(s) 74, 199, 213, 237
LweI GCATC 3 cut(s) 16, 130, 181
MaeII ACGT 1 cut(s) 48
MalI GATC 3 cut(s) 56, 77, 255
MboI GATC 3 cut(s) 54, 75, 253
MluCI AATT 3 cut(s) 105, 130, 153
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 1 cut(s) 254
MspI CCGG 1 cut(s) 200
Mva1269I GAATGC 1 cut(s) 41
NdeII GATC 3 cut(s) 54, 75, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 41
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 49
Sau3AI GATC 3 cut(s) 54, 75, 253
SchI GAGTC 1 cut(s) 168
SetI ASST 5 cut(s) 51, 66, 74, 189, 207
SfaNI GCATC 3 cut(s) 16, 130, 181
Sse9I AATT 3 cut(s) 105, 130, 153
StyI CCWWGG 2 cut(s) 112, 144
TaiI ACGT 1 cut(s) 51
TaqI TCGA 2 cut(s) 162, 252
TasI AATT 3 cut(s) 105, 130, 153
TspDTI ATGAA 1 cut(s) 199
XapI RAATTY 2 cut(s) 105, 130
XcmI CCANNNNNNNNNTGG 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.