RchiOBHm_Chr3g0488481

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000335
Physical Location & Seq
Forward (+)
36134382 .. 36141424
7043 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ45283

Sequence Viewer

Length: 1002 bp
ATGCGGTCAAATGAGGCTCCCGCGCTTATATTGTTGTTTAGAGTTGTACACTCTCAGGCAATTGAATTTGTGAATTCAAGCCATATACTGCAGGGTCCCAATAGAGAAGCCTTCAGAACCTCTGCTACTTCTCATGCTGGTGTTCATTTATGTCCACTAATGCATAATAGTGTCTTCAAATATTATATATGTCTCTTGAAGCAAAGAATGGAGTTTCCCTGGAATTACATGCCATATACTAAGCTGGCTATCTTTCTTAGTTGGATCATTAAGACGCGGTCATGTTTCAAAGAAGTGGCAAATATTGATACAACACTGCACCCTACTGTGGGAGTTTTTTATGCTGCTAATAATTCTAGCACTGGAACAGACTCAGAAAAGTCAGAAAGGGACTTGCTTGGTGACATAATTAAGACACTATTATATGTGATAAGTGAGATCATTCATGTGGCTTCTGATAATTTGGATAGTTTCTCTGCTTATTTGCAACCTAGCAGGTATGATAGAGATACAAGTATAACTGCGGAGTTGTCAAATGGAAACTGCAGTGATTCTCAATATATTTGTGGTATTGCTAGACTTGTTCTTGGTTTGGCAAGTTCTGTTGGTGCAATGTACAGAGCTGGGGTGGATGATGCTATTTTCAATATAAACAAGGTTATGGTATCATGGGTTCTGCATATGAATAGACTGGTTCAAGGCTCCTTTCATCATCTTATCCAATGGGGTATCACCCTTGAGTTTGTCTCTACTATCTCCATTTATGGTTGCTTCTTTTATAACAATTTGGGGGCTGCTCTTGACAATATAATGGCTCTCCAGCTGGTTAACATAGTTGATTGTGCTCTTGGAACTTCACTCAATGCTTTTGATAGGTATTGGGATAAAATGTTCTTGCTGTTGGCAGTATCTGCAGTTTCGGAGCCTCAGAAGCCAAAGATGACTTTTGGTGACTTGGATAATGAAGCAAGGACAAAATTTCGGAAGACATTTCAGGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

333

Amino Acids

37.43

Weight (kDa)

6.79

Isoelectric Point (pI)

42.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 780
Acc36I ACCTGC 1 cut(s) 486
AccII CGCG 2 cut(s) 23, 277
AciI CCGC 4 cut(s) 4, 21, 277, 524
AclWI GGATC 1 cut(s) 272
AcsI RAATTY 3 cut(s) 65, 73, 977
AcuI CTGAAG 1 cut(s) 97
AfaI GTAC 2 cut(s) 48, 617
AfiI CCNNNNNNNGG 2 cut(s) 328, 329
AgsI TTSAA 7 cut(s) 65, 78, 178, 199, 289, 646, 698
AjnI CCWGG 1 cut(s) 218
AloI GAACNNNNNNTCC 2 cut(s) 875, 907
AluBI AGCT 3 cut(s) 244, 623, 823
AluI AGCT 3 cut(s) 244, 623, 823
Alw21I GWGCWC 1 cut(s) 847
Alw26I GTCTC 2 cut(s) 197, 751
AlwI GGATC 1 cut(s) 272
AlwNI CAGNNNCTG 1 cut(s) 911
ApeKI GCWGC 2 cut(s) 344, 794
ApoI RAATTY 3 cut(s) 65, 73, 977
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 95
AsuHPI GGTGA 3 cut(s) 413, 724, 962
AvaII GGWCC 1 cut(s) 95
BbsI GAAGAC 2 cut(s) 166, 992
Bbv12I GWGCWC 1 cut(s) 847
BbvI GCAGC 2 cut(s) 331, 781
BciT130I CCWGG 1 cut(s) 220
BcoDI GTCTC 2 cut(s) 197, 751
BfaI CTAG 3 cut(s) 357, 492, 576
BfmI CTRYAG 3 cut(s) 89, 544, 912
BfuAI ACCTGC 1 cut(s) 486
BisI GCNGC 2 cut(s) 345, 795
BlsI GCNGC 2 cut(s) 346, 796
Bme1390I CCNGG 1 cut(s) 220
Bme18I GGWCC 1 cut(s) 95
BmgT120I GGNCC 1 cut(s) 95
BmiI GGNNCC 5 cut(s) 18, 96, 97, 703, 924
BmrFI CCNGG 1 cut(s) 220
BmsI GCATC 1 cut(s) 625
BpiI GAAGAC 2 cut(s) 166, 992
BplI GAGNNNNNCTC 2 cut(s) 731, 763
BpmI CTGGAG 1 cut(s) 803
BpuEI CTTGAG 1 cut(s) 758
BsaJI CCNNGG 1 cut(s) 218
Bsc4I CCNNNNNNNGG 2 cut(s) 328, 329
Bse1I ACTGG 2 cut(s) 367, 696
Bse3DI GCAATG 1 cut(s) 618
BseBI CCWGG 1 cut(s) 220
BseDI CCNNGG 1 cut(s) 218
BseGI GGATG 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 328, 329
BseMI GCAATG 1 cut(s) 618
BseMII CTCAG 3 cut(s) 68, 387, 941
BseNI ACTGG 2 cut(s) 367, 696
BseXI GCAGC 2 cut(s) 331, 781
BseYI CCCAGC 1 cut(s) 623
BsgI GTGCAG 1 cut(s) 302
Bsh1236I CGCG 2 cut(s) 23, 277
BsiHKAI GWGCWC 1 cut(s) 847
BslFI GGGAC 2 cut(s) 81, 404
BslI CCNNNNNNNGG 2 cut(s) 328, 329
BsmAI GTCTC 2 cut(s) 197, 751
BsmFI GGGAC 2 cut(s) 81, 404
Bsp1286I GDGCHC 1 cut(s) 847
Bsp1407I TGTACA 2 cut(s) 46, 615
Bsp143I GATC 2 cut(s) 264, 438
BspACI CCGC 4 cut(s) 4, 21, 277, 524
BspCNI CTCAG 3 cut(s) 67, 386, 940
BspFNI CGCG 2 cut(s) 23, 277
BspLI GGNNCC 5 cut(s) 18, 96, 97, 703, 924
BspMAI CTGCAG 3 cut(s) 93, 548, 916
BspMI ACCTGC 1 cut(s) 486
BspPI GGATC 1 cut(s) 272
BsrDI GCAATG 1 cut(s) 618
BsrGI TGTACA 2 cut(s) 46, 615
BsrI ACTGG 2 cut(s) 367, 696
BssECI CCNNGG 1 cut(s) 218
BssMI GATC 2 cut(s) 264, 438
Bst2UI CCWGG 1 cut(s) 220
Bst4CI ACNGT 1 cut(s) 328
BstAPI GCANNNNNTGC 1 cut(s) 911
BstAUI TGTACA 2 cut(s) 46, 615
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 5 cut(s) 54, 240, 257, 373, 927
BstF5I GGATG 1 cut(s) 637
BstFNI CGCG 2 cut(s) 23, 277
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 2 cut(s) 267, 441
BstMAI GTCTC 2 cut(s) 197, 751
BstMBI GATC 2 cut(s) 264, 438
BstMWI GCNNNNNNNGC 2 cut(s) 911, 931
BstNI CCWGG 1 cut(s) 220
BstNSI RCATGY 1 cut(s) 232
BstSCI CCNGG 1 cut(s) 218
BstSFI CTRYAG 3 cut(s) 89, 544, 912
BstUI CGCG 2 cut(s) 23, 277
BstV1I GCAGC 2 cut(s) 331, 781
BstV2I GAAGAC 2 cut(s) 166, 992
BtsCI GGATG 1 cut(s) 637
BtsI GCAGTG 2 cut(s) 314, 553
BtsIMutI CAGTG 3 cut(s) 314, 360, 553
BveI ACCTGC 1 cut(s) 486
Cac8I GCNNGC 1 cut(s) 246
CaiI CAGNNNCTG 1 cut(s) 911
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 95
CseI GACGC 1 cut(s) 283
Csp6I GTAC 2 cut(s) 47, 616
CviAII CATG 5 cut(s) 134, 229, 282, 446, 669
CviQI GTAC 2 cut(s) 47, 616
DdeI CTNAG 5 cut(s) 54, 240, 257, 373, 927
DpnI GATC 2 cut(s) 266, 440
DpnII GATC 2 cut(s) 264, 438
Eco47I GGWCC 1 cut(s) 95
Eco57I CTGAAG 1 cut(s) 97
EcoO109I RGGNCCY 1 cut(s) 95
EcoRI GAATTC 1 cut(s) 73
EcoRII CCWGG 1 cut(s) 218
EcoT22I ATGCAT 1 cut(s) 165
FaeI CATG 5 cut(s) 137, 232, 285, 449, 672
FaqI GGGAC 2 cut(s) 81, 404
FatI CATG 5 cut(s) 133, 228, 281, 445, 668
FauI CCCGC 1 cut(s) 28
FauNDI CATATG 1 cut(s) 681
Fnu4HI GCNGC 2 cut(s) 345, 795
FokI GGATG 1 cut(s) 644
Fsp4HI GCNGC 2 cut(s) 345, 795
FspBI CTAG 3 cut(s) 357, 492, 576
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 345, 795
GsaI CCCAGC 1 cut(s) 627
GsuI CTGGAG 1 cut(s) 803
HgaI GACGC 1 cut(s) 283
HhaI GCGC 1 cut(s) 25
Hin1II CATG 5 cut(s) 137, 232, 285, 449, 672
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 829
HindII GTYRAC 1 cut(s) 829
HinfI GANTC 2 cut(s) 371, 551
HpaI GTTAAC 1 cut(s) 829
HphI GGTGA 3 cut(s) 413, 724, 962
Hpy166II GTNNAC 3 cut(s) 49, 155, 829
Hpy188I TCNGA 7 cut(s) 116, 376, 385, 457, 922, 930, 984
Hpy188III TCNNGA 2 cut(s) 196, 800
Hpy8I GTNNAC 3 cut(s) 49, 155, 829
HpyAV CCTTC 1 cut(s) 121
HpyCH4III ACNGT 1 cut(s) 328
HpyCH4V TGCA 8 cut(s) 91, 163, 319, 487, 546, 611, 679, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 911, 931
HpyF3I CTNAG 5 cut(s) 54, 240, 257, 373, 927
Hsp92II CATG 5 cut(s) 137, 232, 285, 449, 672
HspAI GCGC 1 cut(s) 23
KflI GGGWCCC 1 cut(s) 95
KspAI GTTAAC 1 cut(s) 829
Kzo9I GATC 2 cut(s) 264, 438
LmnI GCTCC 3 cut(s) 22, 707, 922
Lsp1109I GCAGC 2 cut(s) 331, 781
LweI GCATC 1 cut(s) 625
MaeI CTAG 3 cut(s) 357, 492, 576
MaeIII GTNAC 2 cut(s) 401, 950
MalI GATC 2 cut(s) 266, 440
MboI GATC 2 cut(s) 264, 438
MboII GAAGA 2 cut(s) 166, 997
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 847
MluCI AATT 9 cut(s) 60, 65, 73, 223, 352, 408, 460, 784, 977
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 242
MnlI CCTC 3 cut(s) 7, 130, 936
Mph1103I ATGCAT 1 cut(s) 165
MseI TTAA 3 cut(s) 270, 411, 828
MslI CAYNNNNRTG 3 cut(s) 138, 168, 446
MspA1I CMGCKG 1 cut(s) 823
MspR9I CCNGG 1 cut(s) 220
MunI CAATTG 1 cut(s) 60
MvaI CCWGG 1 cut(s) 220
MvnI CGCG 2 cut(s) 23, 277
MwoI GCNNNNNNNGC 2 cut(s) 911, 931
NdeI CATATG 1 cut(s) 681
NdeII GATC 2 cut(s) 264, 438
NlaIII CATG 5 cut(s) 137, 232, 285, 449, 672
NlaIV GGNNCC 5 cut(s) 18, 96, 97, 703, 924
NmuCI GTSAC 2 cut(s) 401, 950
NsiI ATGCAT 1 cut(s) 165
NspI RCATGY 1 cut(s) 232
PfeI GAWTC 1 cut(s) 551
PflFI GACNNNGTC 1 cut(s) 277
PkrI GCNGC 2 cut(s) 346, 796
PleI GAGTC 1 cut(s) 365
PpsI GAGTC 1 cut(s) 365
PpuMI RGGWCCY 1 cut(s) 95
PsiI TTATAA 1 cut(s) 780
Psp5II RGGWCCY 1 cut(s) 95
Psp6I CCWGG 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 623
PspGI CCWGG 1 cut(s) 218
PspN4I GGNNCC 5 cut(s) 18, 96, 97, 703, 924
PspPI GGNCC 1 cut(s) 95
PspPPI RGGWCCY 1 cut(s) 95
PsrI GAACNNNNNNTAC 4 cut(s) 109, 141, 657, 689
PstI CTGCAG 3 cut(s) 93, 548, 916
PstNI CAGNNNCTG 1 cut(s) 911
PsyI GACNNNGTC 1 cut(s) 277
PvuII CAGCTG 1 cut(s) 823
RsaI GTAC 2 cut(s) 48, 617
RsaNI GTAC 2 cut(s) 47, 616
RseI CAYNNNNRTG 3 cut(s) 138, 168, 446
SaqAI TTAA 3 cut(s) 270, 411, 828
SatI GCNGC 2 cut(s) 345, 795
Sau3AI GATC 2 cut(s) 264, 438
Sau96I GGNCC 1 cut(s) 95
SchI GAGTC 1 cut(s) 365
ScrFI CCNGG 1 cut(s) 220
SduI GDGCHC 1 cut(s) 847
SetI ASST 8 cut(s) 122, 246, 493, 500, 625, 660, 825, 878
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 3 cut(s) 89, 544, 912
SinI GGWCC 1 cut(s) 95
SmiMI CAYNNNNRTG 3 cut(s) 138, 168, 446
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
Sse9I AATT 9 cut(s) 60, 65, 73, 223, 352, 408, 460, 784, 977
SsiI CCGC 4 cut(s) 4, 21, 277, 524
SspI AATATT 2 cut(s) 182, 304
SspMI CTAG 3 cut(s) 357, 492, 576
StyD4I CCNGG 1 cut(s) 218
TaaI ACNGT 1 cut(s) 328
TasI AATT 9 cut(s) 60, 65, 73, 223, 352, 408, 460, 784, 977
TatI WGTACW 2 cut(s) 46, 615
TfiI GAWTC 1 cut(s) 551
Tru1I TTAA 3 cut(s) 270, 411, 828
Tru9I TTAA 3 cut(s) 270, 411, 828
TscAI CASTG 3 cut(s) 321, 367, 553
TseFI GTSAC 2 cut(s) 401, 950
TseI GCWGC 2 cut(s) 344, 794
Tsp45I GTSAC 2 cut(s) 401, 950
TspDTI ATGAA 5 cut(s) 134, 434, 698, 698, 978
TspRI CASTG 3 cut(s) 321, 367, 553
Tth111I GACNNNGTC 1 cut(s) 277
VpaK11BI GGWCC 1 cut(s) 95
XapI RAATTY 3 cut(s) 65, 73, 977
XceI RCATGY 1 cut(s) 232
XspI CTAG 3 cut(s) 357, 492, 576
Zsp2I ATGCAT 1 cut(s) 165
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.