Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

2426994 .. 2427385

Gene Structure 392 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026365

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAACATTTTGGGAGACAGGGTTGAGAAGGTGGTTGTATCCGATAGAATTGTGGATTCGCCTTGTGGCTTGGTGACTGGTGAATATGGAGAGGAGTTGAAGGATCAGGCAGGCAAGAAGACCATGGAGATTAACCCTGATGACGGGATCATGGAGGAGTTGAGGAAGACTGCTGAAGCTGACAAAAACGACGAGTCCACCACGGACCTGGTGCTGCTGCTCCTTGATGAGCCAAAACATTTTGCCTCGAGAATTCACAGGATGTTGAAGCTGGGCGTAATGGCGTATAAAGATGCTGACATGCTTGCTTCGGAGGATGATGATGCTGAAGCTGAGAGGGAGTTAGAAGAGGTAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

120

Amino Acids

13.32

Weight (kDa)

4.34

Isoelectric Point (pI)

25.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	2 - 114	1.8e-16	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AclWI	GGATC	2 cut(s)	111, 155
AcsI	RAATTY	1 cut(s)	252
AcuI	CTGAAG	2 cut(s)	195, 348
AfiI	CCNNNNNNNGG	1 cut(s)	143
AgsI	TTSAA	2 cut(s)	100, 268
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	179, 271, 332
AluI	AGCT	3 cut(s)	179, 271, 332
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	111, 155
Ama87I	CYCGRG	1 cut(s)	247
ApeKI	GCWGC	2 cut(s)	214, 217
ApoI	RAATTY	1 cut(s)	252
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	85, 92
AvaI	CYCGRG	1 cut(s)	247
AvaII	GGWCC	1 cut(s)	205
BbsI	GAAGAC	2 cut(s)	125, 173
BbvI	GCAGC	2 cut(s)	201, 204
BciT130I	CCWGG	1 cut(s)	209
BciVI	GTATCC	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	49
BisI	GCNGC	2 cut(s)	215, 218
BlsI	GCNGC	2 cut(s)	216, 219
Bme1390I	CCNGG	1 cut(s)	209
Bme18I	GGWCC	1 cut(s)	205
BmeT110I	CYCGRG	1 cut(s)	247
BmgT120I	GGNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	2 cut(s)	283, 313
BpiI	GAAGAC	2 cut(s)	125, 173
BsaJI	CCNNGG	2 cut(s)	123, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	6, 36
Bsc4I	CCNNNNNNNGG	1 cut(s)	143
Bse1I	ACTGG	1 cut(s)	82
BseBI	CCWGG	1 cut(s)	209
BseDI	CCNNGG	2 cut(s)	123, 201
BseGI	GGATG	2 cut(s)	267, 322
BseLI	CCNNNNNNNGG	1 cut(s)	143
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	1 cut(s)	82
BseRI	GAGGAG	2 cut(s)	107, 170
BseXI	GCAGC	2 cut(s)	201, 204
BseYI	CCCAGC	1 cut(s)	271
BsiHKCI	CYCGRG	1 cut(s)	247
BslI	CCNNNNNNNGG	1 cut(s)	143
BsmAI	GTCTC	1 cut(s)	9
BsoBI	CYCGRG	1 cut(s)	247
Bsp143I	GATC	2 cut(s)	103, 147
Bsp19I	CCATGG	1 cut(s)	123
BspCNI	CTCAG	1 cut(s)	325
BspPI	GGATC	2 cut(s)	111, 155
BsrI	ACTGG	1 cut(s)	82
BssECI	CCNNGG	2 cut(s)	123, 201
BssMI	GATC	2 cut(s)	103, 147
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	209
Bst6I	CTCTTC	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	112, 306
BstDEI	CTNAG	1 cut(s)	333
BstDSI	CCRYGG	2 cut(s)	123, 201
BstF5I	GGATG	2 cut(s)	267, 322
BstKTI	GATC	2 cut(s)	106, 150
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	103, 147
BstNI	CCWGG	1 cut(s)	209
BstNSI	RCATGY	1 cut(s)	304
BstSCI	CCNGG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	201, 204
BstV2I	GAAGAC	2 cut(s)	125, 173
BstXI	CCANNNNNNTGG	1 cut(s)	208
BsuI	GTATCC	1 cut(s)	49
BtgI	CCRYGG	2 cut(s)	123, 201
BtsCI	GGATG	2 cut(s)	267, 322
Cac8I	GCNNGC	2 cut(s)	112, 306
Cfr13I	GGNCC	1 cut(s)	205
CsiI	ACCWGGT	1 cut(s)	207
CviAII	CATG	3 cut(s)	124, 151, 301
CviJI	RGCY	5 cut(s)	69, 179, 232, 271, 332
CviKI_1	RGCY	5 cut(s)	69, 179, 232, 271, 332
DdeI	CTNAG	1 cut(s)	333
DpnI	GATC	2 cut(s)	105, 149
DpnII	GATC	2 cut(s)	103, 147
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco130I	CCWWGG	1 cut(s)	123
Eco47I	GGWCC	1 cut(s)	205
Eco57I	CTGAAG	2 cut(s)	195, 348
Eco88I	CYCGRG	1 cut(s)	247
EcoRI	GAATTC	1 cut(s)	252
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	123
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	3 cut(s)	127, 154, 304
FaiI	YATR	5 cut(s)	87, 125, 152, 288, 302
FatI	CATG	3 cut(s)	123, 150, 300
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	2 cut(s)	215, 218
FokI	GGATG	2 cut(s)	274, 329
Fsp4HI	GCNGC	2 cut(s)	215, 218
GluI	GCNGC	2 cut(s)	215, 218
GsaI	CCCAGC	1 cut(s)	275
Hin1II	CATG	3 cut(s)	127, 154, 304
HinfI	GANTC	2 cut(s)	56, 194
HphI	GGTGA	2 cut(s)	85, 92
Hpy166II	GTNNAC	2 cut(s)	198, 355
Hpy188I	TCNGA	2 cut(s)	43, 313
Hpy188III	TCNNGA	1 cut(s)	249
Hpy8I	GTNNAC	2 cut(s)	198, 355
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	22, 94
HpyF3I	CTNAG	1 cut(s)	333
Hsp92II	CATG	3 cut(s)	127, 154, 304
Kzo9I	GATC	2 cut(s)	103, 147
LmnI	GCTCC	1 cut(s)	225
LpnPI	CCDG	9 cut(s)	4, 63, 92, 96, 150, 194, 221, 244, 257
Lsp1109I	GCAGC	2 cut(s)	201, 204
LweI	GCATC	2 cut(s)	283, 313
MabI	ACCWGGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	2 cut(s)	105, 149
MboI	GATC	2 cut(s)	103, 147
MboII	GAAGA	3 cut(s)	130, 178, 359
MluCI	AATT	2 cut(s)	48, 252
MlyI	GAGTC	1 cut(s)	203
MnlI	CCTC	7 cut(s)	85, 148, 156, 256, 307, 330, 343
MseI	TTAA	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
NcoI	CCATGG	1 cut(s)	123
NdeII	GATC	2 cut(s)	103, 147
NlaIII	CATG	3 cut(s)	127, 154, 304
NmuCI	GTSAC	1 cut(s)	73
NspI	RCATGY	1 cut(s)	304
PaeR7I	CTCGAG	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	56
PkrI	GCNGC	2 cut(s)	216, 219
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	207
PspPI	GGNCC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	132
SatI	GCNGC	2 cut(s)	215, 218
Sau3AI	GATC	2 cut(s)	103, 147
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	1 cut(s)	203
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	6 cut(s)	33, 181, 210, 273, 334, 354
SexAI	ACCWGGT	1 cut(s)	207
SfaNI	GCATC	2 cut(s)	283, 313
Sfr274I	CTCGAG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	205
SlaI	CTCGAG	1 cut(s)	247
SmlI	CTYRAG	1 cut(s)	247
SmoI	CTYRAG	1 cut(s)	247
Sse9I	AATT	2 cut(s)	48, 252
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	123
TaqI	TCGA	1 cut(s)	248
TasI	AATT	2 cut(s)	48, 252
TfiI	GAWTC	1 cut(s)	56
Tru1I	TTAA	1 cut(s)	132
Tru9I	TTAA	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	214, 217
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	218
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	252
XceI	RCATGY	1 cut(s)	304
XcmI	CCANNNNNNNNNTGG	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	247
XmiI	GTMKAC	1 cut(s)	354

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.