Rw7G013990

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
13454669 .. 13456859
2191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G013990.1

Sequence Viewer

Length: 2037 bp
ATGGAAGCTGACGTTGAGACCTTCGCATTCCAGGCGGAGATCAACCAGCTTCTGAGTTTGATCATCAACACTTTCTACAGCAACAAAGAGATTTTCCTCCGCGAGCTCATTAGCAATGCCTCTGATCTCGAGTCTCAACCCGAACTATGCATCCGGATCATCCCAGACAAGGTCAACAAAACCCTCACCATCTTCGACACCGGCGTTGGCATGACCAAAGCAGACTTGGTGAACAATTTGGGGACGATTGCGAGGTCCGGGACCAAAGAGTTTATGGAGGCTTTGCAGGCCGGGGCTGACGTGAGCATGATCGGGCAGTTCGGCGTGGGATTCTACTCTGCTTATTTGGTGGCTGAGAAGGTCATTGTTGTGACTAAGCACAATGATGATGATCAATATGTGTGGGAGTCTCAGGCTGGTGGGTCTTTTACTGTTACTAGGGATGTTAATGGAGAGCCACTTGGTAGAGGGACCAAGGTGATTTTGTATCTCAAGGAAGACCAGCTCGATTTCTTGGACGAGAGGAAGCTTAAGGAGCTTGTGAAGAAGCATTCTGAGTTTATAAGCTACCCGATTTACCTATGGGCGAAGAAAACCGTGGAGAAAGAGATTAGTGATGATGAAGATGATGCAGGGGAAGCCAAGAATACAGAGGAGGGTGATGTTGAGGAAGTTGATGAGGACAAAGACAAGGAAGGGAAGCCGAAGAAGAAGAAGGTGATGGAGGTGGTACATGAGTGGGAGCTACTCAACAAGCAGAAGCCGATTTGGCTGAGGAAGCCGGAGGAGGTTTCGAAGGAGGAGTATTGCTCTTTCTACAAGAGCCTTACCAATGATTGGGAAGACCCTCTTGCTTGGAAGCATTTCGCTGTGGAAGGCCAGCTCGAGTTCAAGTCAATCCTCTTCTTGCCGAAAAGAGCACCTTTTGATCTGTTTGACACGAGGAAGAAGCCGAACAACATCAAGCTTTATGTGCGCAGGGTGTTTATAATGGACAATTGTGAGGAGCTGATGCCGGAGTACCTTGGATTTGTGAAGGGCGTTGTGGATTCTGATGATCTGCCGCTCAACATTTCGCGTGAGATGCTGCAACAGAACAAGATTCTCAAGGTGATTAGGAAGAATCTGGTGAAGAAGTGCCTCGAGATGTTCAATGAGGTTGCAGAAAATAAGGAGTATACTAAATTCTATGAGGCTTTCTCGAAGAACCTCAAGTTGGGTATCCATGAGGACAGCCAGAACAGGGCGAAGCTGGCTGATTTGCTCAGGTACTACTCCACCAAAAGCACTGATGAGATGACCAGCTTTAAGGACTATGTCACGAGGATGAAGGAGGGCCAGAAGAACATATACTACATTACCGGTGAGAGCAAGAAGGCTGTCGAGAACTCGCCATTTCTGGAGAGGCTTAAGAAGAAGGGATATGAGGTGTTGTTTATGGTTGAGCCGATTGATGAGTATGCTGTTGGACAGTTGAAGGAGTATGATGGGAAGAAGCTAAGGTCTGTAACGAAAGAAGGGCTTCAGCTTGAGGATGAGTCGGAAGAGGAGAAGAAGCAGAAAGAGGAGAAGAAGAAGTCGTTTGAGAAGCTGTACAAGAAGACCAAGGAGTTTCTTGGGGATAGGGCGCAGAAGGTGGTGGTTTCTGACAGAGTTTATGGGTGGACAGCTAACATGGAGAGAATTATGAAAGCTCAGGCTTTGAGGGACAATAGCATGGGAGCATACATGTCTAGCAAGAAGACTATGGAGATTAATCCAGACAATCCTATAGTGGAGGAGCTGAGGAAGAGGGTCGAGACTGATGAGAATGACAAGTCGGTGAAGGACATTGTGCTGCTGCTCTATGAGACCGCTCTGTTGAGTTCGGGGTTCAGCCTTGATGATCCCAACAGGTTTGCTGGGAGGATTCACAGGATGCTGAAACTGGGTCTCAGCATTGATGAAGATGATGACCCTGAACTAGTTGATGATGTCGACATGCCTCCATTGGAGGAGAATAAGGTTGAGGAAAGCCAGATGGAAGAAGTTGACTGA

Protein Analysis

678

Amino Acids

78.51

Weight (kDa)

5.01

Isoelectric Point (pI)

35.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 31 - 130 8.7e-08 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c PF02518 33 - 167 3.2e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 170 - 663 5.7e-225 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 563, 989
Acc16I TGCGCA 1 cut(s) 977
AccB7I CCANNNNNTGG 1 cut(s) 837
AccBSI CCGCTC 2 cut(s) 1066, 1856
AccI GTMKAC 2 cut(s) 1178, 1977
AccII CGCG 2 cut(s) 102, 1078
AccIII TCCGGA 1 cut(s) 153
AciI CCGC 4 cut(s) 35, 100, 1064, 1854
AclWI GGATC 2 cut(s) 164, 1880
AcsI RAATTY 1 cut(s) 1184
AcuI CTGAAG 1 cut(s) 1508
AfaI GTAC 4 cut(s) 732, 1022, 1271, 1595
AfiI CCNNNNNNNGG 4 cut(s) 169, 837, 1216, 1243
AflII CTTAAG 2 cut(s) 530, 1409
AflIII ACRYGT 1 cut(s) 1728
AgeI ACCGGT 1 cut(s) 1361
AgsI TTSAA 3 cut(s) 892, 1153, 1477
AhlI ACTAGT 1 cut(s) 1963
AjiI CACGTC 1 cut(s) 301
AjnI CCWGG 1 cut(s) 30
AjuI GAANNNNNNNTTGG 2 cut(s) 1199, 1231
AloI GAACNNNNNNTCC 2 cut(s) 135, 167
Alw21I GWGCWC 2 cut(s) 108, 922
Alw26I GTCTC 6 cut(s) 11, 138, 414, 1793, 1844, 1937
AlwI GGATC 2 cut(s) 164, 1880
AlwNI CAGNNNCTG 1 cut(s) 52
Ama87I CYCGRG 3 cut(s) 128, 884, 1142
Aor13HI TCCGGA 1 cut(s) 153
AoxI GGCC 3 cut(s) 288, 877, 1336
ApeKI GCWGC 3 cut(s) 1087, 1837, 1840
ApoI RAATTY 1 cut(s) 1184
AseI ATTAAT 1 cut(s) 1755
AsiGI ACCGGT 1 cut(s) 1361
Asp700I GAANNNNTTC 2 cut(s) 863, 1521
AspLEI GCGC 2 cut(s) 978, 1630
AspS9I GGNCC 4 cut(s) 255, 261, 471, 1336
AsuC2I CCSGG 2 cut(s) 259, 292
AsuHPI GGTGA 9 cut(s) 178, 241, 490, 671, 730, 1123, 1141, 1376, 1834
AsuII TTCGAA 1 cut(s) 794
AvaI CYCGRG 3 cut(s) 128, 884, 1142
AvaII GGWCC 3 cut(s) 255, 261, 471
BaeI ACNNNNGTAYC 2 cut(s) 722, 755
BanII GRGCYC 1 cut(s) 108
BarI GAAGNNNNNNTAC 2 cut(s) 1334, 1366
BauI CACGAG 2 cut(s) 940, 1321
BbsI GAAGAC 4 cut(s) 504, 849, 1607, 1748
Bbv12I GWGCWC 2 cut(s) 108, 922
BbvCI CCTCAGC 2 cut(s) 773, 1784
BbvI GCAGC 3 cut(s) 1074, 1824, 1827
BccI CCATC 4 cut(s) 197, 715, 1481, 2014
BciT130I CCWGG 1 cut(s) 32
BciVI GTATCC 1 cut(s) 1232
BclI TGATCA 2 cut(s) 60, 391
BcnI CCSGG 2 cut(s) 259, 292
BcoDI GTCTC 6 cut(s) 11, 138, 414, 1793, 1844, 1937
BcuI ACTAGT 1 cut(s) 1963
BfaI CTAG 3 cut(s) 438, 1734, 1964
BfmI CTRYAG 2 cut(s) 76, 1770
BfrI CTTAAG 2 cut(s) 530, 1409
BfuI GTATCC 1 cut(s) 1232
BglI GCCNNNNNGGC 1 cut(s) 769
BisI GCNGC 4 cut(s) 1064, 1088, 1838, 1841
BlsI GCNGC 4 cut(s) 1065, 1089, 1839, 1842
Bme1390I CCNGG 3 cut(s) 32, 259, 292
Bme18I GGWCC 3 cut(s) 255, 261, 471
BmeT110I CYCGRG 3 cut(s) 128, 884, 1142
BmgBI CACGTC 1 cut(s) 301
BmgT120I GGNCC 4 cut(s) 255, 261, 471, 1336
BmiI GGNNCC 2 cut(s) 262, 472
BmrFI CCNGG 3 cut(s) 32, 259, 292
BmrI ACTGGG 1 cut(s) 1937
BmsI GCATC 5 cut(s) 159, 619, 1002, 1074, 1908
BmuI ACTGGG 1 cut(s) 1937
BpiI GAAGAC 4 cut(s) 504, 849, 1607, 1748
BplI GAGNNNNNCTC 4 cut(s) 794, 826, 1184, 1216
BpmI CTGGAG 1 cut(s) 1421
Bpu10I CCTNAGC 5 cut(s) 773, 1265, 1499, 1695, 1784
Bpu14I TTCGAA 1 cut(s) 794
BpuEI CTTGAG 4 cut(s) 476, 1091, 1196, 1550
BpuMI CCSGG 2 cut(s) 259, 292
BsaBI GATNNNNATC 1 cut(s) 390
BsaI GGTCTC 3 cut(s) 11, 1844, 1937
BsaJI CCNNGG 5 cut(s) 291, 474, 597, 1024, 1605
BsaWI WCCGGW 2 cut(s) 153, 1361
Bsc4I CCNNNNNNNGG 4 cut(s) 169, 837, 1216, 1243
Bse118I RCCGGY 2 cut(s) 200, 1361
Bse1I ACTGG 1 cut(s) 1932
Bse3DI GCAATG 1 cut(s) 121
Bse8I GATNNNNATC 1 cut(s) 390
BseAI TCCGGA 1 cut(s) 153
BseBI CCWGG 1 cut(s) 32
BseDI CCNNGG 5 cut(s) 291, 474, 597, 1024, 1605
BseGI GGATG 6 cut(s) 150, 159, 448, 1332, 1540, 1923
BseJI GATNNNNATC 1 cut(s) 390
BseLI CCNNNNNNNGG 4 cut(s) 169, 837, 1216, 1243
BseMI GCAATG 1 cut(s) 121
BseMII CTCAG 9 cut(s) 44, 345, 425, 546, 764, 1279, 1709, 1775, 1948
BseNI ACTGG 1 cut(s) 1932
BseRI GAGGAG 8 cut(s) 668, 800, 815, 1019, 1562, 1580, 1793, 2009
BseXI GCAGC 3 cut(s) 1074, 1824, 1827
BseYI CCCAGC 1 cut(s) 1901
Bsh1236I CGCG 2 cut(s) 102, 1078
BshFI GGCC 3 cut(s) 290, 879, 1338
BshTI ACCGGT 1 cut(s) 1361
BsiHKAI GWGCWC 2 cut(s) 108, 922
BsiHKCI CYCGRG 3 cut(s) 128, 884, 1142
BsiSI CCGG 7 cut(s) 154, 201, 258, 291, 782, 1016, 1362
BslFI GGGAC 4 cut(s) 256, 274, 484, 1721
BslI CCNNNNNNNGG 4 cut(s) 169, 837, 1216, 1243
BsmAI GTCTC 6 cut(s) 11, 138, 414, 1793, 1844, 1937
BsmFI GGGAC 4 cut(s) 256, 274, 484, 1721
BsmI GAATGC 2 cut(s) 26, 550
BsnI GGCC 3 cut(s) 290, 879, 1338
Bso31I GGTCTC 3 cut(s) 11, 1844, 1937
BsoBI CYCGRG 3 cut(s) 128, 884, 1142
Bsp119I TTCGAA 1 cut(s) 794
Bsp1286I GDGCHC 2 cut(s) 108, 922
Bsp13I TCCGGA 1 cut(s) 153
Bsp1407I TGTACA 1 cut(s) 1593
Bsp143I GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
BspACI CCGC 4 cut(s) 35, 100, 1064, 1854
BspANI GGCC 3 cut(s) 290, 879, 1338
BspCNI CTCAG 9 cut(s) 45, 346, 424, 547, 765, 1278, 1708, 1776, 1947
BspEI TCCGGA 1 cut(s) 153
BspFNI CGCG 2 cut(s) 102, 1078
BspLI GGNNCC 2 cut(s) 262, 472
BspPI GGATC 2 cut(s) 164, 1880
BspT104I TTCGAA 1 cut(s) 794
BspTI CTTAAG 2 cut(s) 530, 1409
BspTNI GGTCTC 3 cut(s) 11, 1844, 1937
BsrBI CCGCTC 2 cut(s) 1066, 1856
BsrDI GCAATG 1 cut(s) 121
BsrFI RCCGGY 2 cut(s) 200, 1361
BsrGI TGTACA 1 cut(s) 1593
BsrI ACTGG 1 cut(s) 1932
BssAI RCCGGY 2 cut(s) 200, 1361
BssECI CCNNGG 5 cut(s) 291, 474, 597, 1024, 1605
BssMI GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
BssNAI GTATAC 1 cut(s) 1179
BssSI CACGAG 2 cut(s) 940, 1321
BssT1I CCWWGG 3 cut(s) 474, 1024, 1605
Bst1107I GTATAC 1 cut(s) 1179
Bst2BI CACGAG 2 cut(s) 940, 1321
Bst2UI CCWGG 1 cut(s) 32
Bst4CI ACNGT 3 cut(s) 433, 598, 1473
Bst6I CTCTTC 3 cut(s) 908, 1539, 1784
BstAFI CTTAAG 2 cut(s) 530, 1409
BstAUI TGTACA 1 cut(s) 1593
BstBI TTCGAA 1 cut(s) 794
BstC8I GCNNGC 4 cut(s) 104, 288, 881, 1254
BstDSI CCRYGG 1 cut(s) 597
BstF5I GGATG 6 cut(s) 150, 159, 448, 1332, 1540, 1923
BstFNI CGCG 2 cut(s) 102, 1078
BstHHI GCGC 2 cut(s) 978, 1630
BstKTI GATC 9 cut(s) 42, 63, 127, 159, 312, 394, 931, 1060, 1888
BstMAI GTCTC 6 cut(s) 11, 138, 414, 1793, 1844, 1937
BstMBI GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
BstMWI GCNNNNNNNGC 9 cut(s) 32, 287, 535, 638, 769, 778, 973, 1084, 1253
BstNI CCWGG 1 cut(s) 32
BstNSI RCATGY 2 cut(s) 1732, 1984
BstSCI CCNGG 3 cut(s) 30, 257, 290
BstSFI CTRYAG 2 cut(s) 76, 1770
BstUI CGCG 2 cut(s) 102, 1078
BstV1I GCAGC 3 cut(s) 1074, 1824, 1827
BstV2I GAAGAC 4 cut(s) 504, 849, 1607, 1748
BstZ17I GTATAC 1 cut(s) 1179
BsuI GTATCC 1 cut(s) 1232
BsuRI GGCC 3 cut(s) 290, 879, 1338
BtgI CCRYGG 1 cut(s) 597
BtrI CACGTC 1 cut(s) 301
BtsCI GGATG 6 cut(s) 150, 159, 448, 1332, 1540, 1923
BtsIMutI CAGTG 1 cut(s) 1287
Cac8I GCNNGC 4 cut(s) 104, 288, 881, 1254
CaiI CAGNNNCTG 1 cut(s) 52
CfoI GCGC 2 cut(s) 978, 1630
Cfr10I RCCGGY 2 cut(s) 200, 1361
Cfr13I GGNCC 4 cut(s) 255, 261, 471, 1336
Csp6I GTAC 4 cut(s) 731, 1021, 1270, 1594
CspAI ACCGGT 1 cut(s) 1361
CspCI CAANNNNNGTGG 2 cut(s) 383, 418
CviAII CATG 8 cut(s) 211, 307, 734, 1226, 1675, 1717, 1729, 1981
CviQI GTAC 4 cut(s) 731, 1021, 1270, 1594
DpnI GATC 9 cut(s) 41, 62, 126, 158, 311, 393, 930, 1059, 1887
DpnII GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
Eam1104I CTCTTC 3 cut(s) 908, 1539, 1784
EarI CTCTTC 3 cut(s) 908, 1539, 1784
EciI GGCGGA 1 cut(s) 50
Ecl136II GAGCTC 1 cut(s) 106
Eco130I CCWWGG 3 cut(s) 474, 1024, 1605
Eco24I GRGCYC 1 cut(s) 108
Eco31I GGTCTC 3 cut(s) 11, 1844, 1937
Eco47I GGWCC 3 cut(s) 255, 261, 471
Eco53kI GAGCTC 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 1508
Eco88I CYCGRG 3 cut(s) 128, 884, 1142
EcoICRI GAGCTC 1 cut(s) 106
EcoRII CCWGG 1 cut(s) 30
EcoT14I CCWWGG 3 cut(s) 474, 1024, 1605
EcoT22I ATGCAT 1 cut(s) 152
EcoT38I GRGCYC 1 cut(s) 108
ErhI CCWWGG 3 cut(s) 474, 1024, 1605
FaeI CATG 8 cut(s) 214, 310, 737, 1229, 1678, 1720, 1732, 1984
FalI AAGNNNNNCTT 6 cut(s) 834, 866, 907, 939, 1506, 1538
FaqI GGGAC 4 cut(s) 256, 274, 484, 1721
FatI CATG 8 cut(s) 210, 306, 733, 1225, 1674, 1716, 1728, 1980
FbaI TGATCA 2 cut(s) 60, 391
FblI GTMKAC 2 cut(s) 1178, 1977
Fnu4HI GCNGC 4 cut(s) 1064, 1088, 1838, 1841
FokI GGATG 6 cut(s) 137, 146, 455, 1339, 1547, 1930
FriOI GRGCYC 1 cut(s) 108
Fsp4HI GCNGC 4 cut(s) 1064, 1088, 1838, 1841
FspBI CTAG 3 cut(s) 438, 1734, 1964
FspI TGCGCA 1 cut(s) 977
GlaI GCGC 2 cut(s) 977, 1629
GluI GCNGC 4 cut(s) 1064, 1088, 1838, 1841
GsaI CCCAGC 1 cut(s) 1905
GsuI CTGGAG 1 cut(s) 1421
HaeIII GGCC 3 cut(s) 290, 879, 1338
HapII CCGG 7 cut(s) 154, 201, 258, 291, 782, 1016, 1362
HhaI GCGC 2 cut(s) 978, 1630
Hin1II CATG 8 cut(s) 214, 310, 737, 1229, 1678, 1720, 1732, 1984
Hin6I GCGC 2 cut(s) 976, 1628
HinP1I GCGC 2 cut(s) 976, 1628
HincII GTYRAC 3 cut(s) 175, 1978, 2032
HindII GTYRAC 3 cut(s) 175, 1978, 2032
HindIII AAGCTT 2 cut(s) 527, 965
HinfI GANTC 8 cut(s) 131, 330, 407, 1049, 1102, 1123, 1538, 1909
HpaII CCGG 7 cut(s) 154, 201, 258, 291, 782, 1016, 1362
HphI GGTGA 9 cut(s) 178, 241, 490, 671, 730, 1123, 1141, 1376, 1834
Hpy166II GTNNAC 6 cut(s) 175, 232, 1179, 1665, 1978, 2032
Hpy188I TCNGA 6 cut(s) 54, 124, 556, 1054, 1543, 1648
Hpy188III TCNNGA 9 cut(s) 128, 154, 1144, 1201, 1321, 1384, 1400, 1760, 1798
Hpy8I GTNNAC 6 cut(s) 175, 232, 1179, 1665, 1978, 2032
HpyCH4III ACNGT 3 cut(s) 433, 598, 1473
HpyCH4IV ACGT 2 cut(s) 12, 300
HpyCH4V TGCA 5 cut(s) 150, 286, 632, 1090, 1163
HpyF10VI GCNNNNNNNGC 9 cut(s) 32, 287, 535, 638, 769, 778, 973, 1084, 1253
HpySE526I ACGT 2 cut(s) 12, 300
Hsp92II CATG 8 cut(s) 214, 310, 737, 1229, 1678, 1720, 1732, 1984
HspAI GCGC 2 cut(s) 976, 1628
Kpn2I TCCGGA 1 cut(s) 153
Ksp22I TGATCA 2 cut(s) 60, 391
Kzo9I GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
LmnI GCTCC 5 cut(s) 535, 742, 1006, 1721, 1780
Lsp1109I GCAGC 3 cut(s) 1074, 1824, 1827
LweI GCATC 5 cut(s) 159, 619, 1002, 1074, 1908
MaeI CTAG 3 cut(s) 438, 1734, 1964
MaeII ACGT 2 cut(s) 12, 300
MaeIII GTNAC 4 cut(s) 370, 433, 1318, 1507
MalI GATC 9 cut(s) 41, 62, 126, 158, 311, 393, 930, 1059, 1887
MbiI CCGCTC 2 cut(s) 1066, 1856
MboI GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
MfeI CAATTG 1 cut(s) 997
MhlI GDGCHC 2 cut(s) 108, 922
MluCI AATT 4 cut(s) 235, 997, 1184, 1683
MlyI GAGTC 3 cut(s) 140, 416, 1547
MmeI TCCRAC 2 cut(s) 1447, 1521
Mph1103I ATGCAT 1 cut(s) 152
MroI TCCGGA 1 cut(s) 153
MroXI GAANNNNTTC 2 cut(s) 863, 1521
MseI TTAA 5 cut(s) 447, 531, 1308, 1410, 1755
MslI CAYNNNNRTG 3 cut(s) 368, 384, 1325
MspCI CTTAAG 2 cut(s) 530, 1409
MspI CCGG 7 cut(s) 154, 201, 258, 291, 782, 1016, 1362
MspR9I CCNGG 3 cut(s) 32, 259, 292
MunI CAATTG 1 cut(s) 997
Mva1269I GAATGC 2 cut(s) 26, 550
MvaI CCWGG 1 cut(s) 32
MvnI CGCG 2 cut(s) 102, 1078
MwoI GCNNNNNNNGC 9 cut(s) 32, 287, 535, 638, 769, 778, 973, 1084, 1253
NciI CCSGG 2 cut(s) 259, 292
NdeII GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
NlaIII CATG 8 cut(s) 214, 310, 737, 1229, 1678, 1720, 1732, 1984
NlaIV GGNNCC 2 cut(s) 262, 472
NmuCI GTSAC 2 cut(s) 370, 1318
NsbI TGCGCA 1 cut(s) 977
NsiI ATGCAT 1 cut(s) 152
NspI RCATGY 2 cut(s) 1732, 1984
NspV TTCGAA 1 cut(s) 794
PaeR7I CTCGAG 3 cut(s) 128, 884, 1142
PciI ACATGT 1 cut(s) 1728
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PctI GAATGC 2 cut(s) 26, 550
PdmI GAANNNNTTC 2 cut(s) 863, 1521
PfeI GAWTC 5 cut(s) 330, 1049, 1102, 1123, 1909
PflFI GACNNNGTC 2 cut(s) 170, 1316
PflMI CCANNNNNTGG 1 cut(s) 837
PfoI TCCNGGA 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 1361
PkrI GCNGC 4 cut(s) 1065, 1089, 1839, 1842
PleI GAGTC 3 cut(s) 139, 415, 1546
PpsI GAGTC 3 cut(s) 139, 415, 1546
PscI ACATGT 1 cut(s) 1728
PshBI ATTAAT 1 cut(s) 1755
PsiI TTATAA 2 cut(s) 563, 989
Psp124BI GAGCTC 1 cut(s) 108
Psp6I CCWGG 1 cut(s) 30
PspFI CCCAGC 1 cut(s) 1901
PspGI CCWGG 1 cut(s) 30
PspN4I GGNNCC 2 cut(s) 262, 472
PspPI GGNCC 4 cut(s) 255, 261, 471, 1336
PspXI VCTCGAGB 1 cut(s) 884
PsrI GAACNNNNNNTAC 2 cut(s) 1337, 1369
PstNI CAGNNNCTG 1 cut(s) 52
PsyI GACNNNGTC 2 cut(s) 170, 1316
RsaI GTAC 4 cut(s) 732, 1022, 1271, 1595
RsaNI GTAC 4 cut(s) 731, 1021, 1270, 1594
RseI CAYNNNNRTG 3 cut(s) 368, 384, 1325
SacI GAGCTC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 1976
SaqAI TTAA 5 cut(s) 447, 531, 1308, 1410, 1755
SatI GCNGC 4 cut(s) 1064, 1088, 1838, 1841
Sau3AI GATC 9 cut(s) 39, 60, 124, 156, 309, 391, 928, 1057, 1885
Sau96I GGNCC 4 cut(s) 255, 261, 471, 1336
SchI GAGTC 3 cut(s) 140, 416, 1547
ScrFI CCNGG 3 cut(s) 32, 259, 292
SduI GDGCHC 2 cut(s) 108, 922
SfaNI GCATC 5 cut(s) 159, 619, 1002, 1074, 1908
SfcI CTRYAG 2 cut(s) 76, 1770
Sfr274I CTCGAG 3 cut(s) 128, 884, 1142
SfuI TTCGAA 1 cut(s) 794
SgrAI CRCCGGYG 1 cut(s) 200
SinI GGWCC 3 cut(s) 255, 261, 471
SlaI CTCGAG 3 cut(s) 128, 884, 1142
SmiMI CAYNNNNRTG 3 cut(s) 368, 384, 1325
SmlI CTYRAG 9 cut(s) 128, 491, 530, 884, 1106, 1142, 1211, 1409, 1529
SmoI CTYRAG 9 cut(s) 128, 491, 530, 884, 1106, 1142, 1211, 1409, 1529
SpeI ACTAGT 1 cut(s) 1963
Sse9I AATT 4 cut(s) 235, 997, 1184, 1683
SsiI CCGC 4 cut(s) 35, 100, 1064, 1854
SspMI CTAG 3 cut(s) 438, 1734, 1964
SstI GAGCTC 1 cut(s) 108
StyD4I CCNGG 3 cut(s) 30, 257, 290
StyI CCWWGG 3 cut(s) 474, 1024, 1605
TaaI ACNGT 3 cut(s) 433, 598, 1473
TaiI ACGT 2 cut(s) 15, 303
TasI AATT 4 cut(s) 235, 997, 1184, 1683
TatI WGTACW 1 cut(s) 1593
TauI GCSGC 1 cut(s) 1066
TfiI GAWTC 5 cut(s) 330, 1049, 1102, 1123, 1909
Tru1I TTAA 5 cut(s) 447, 531, 1308, 1410, 1755
Tru9I TTAA 5 cut(s) 447, 531, 1308, 1410, 1755
TscAI CASTG 1 cut(s) 1294
TseFI GTSAC 2 cut(s) 370, 1318
TseI GCWGC 3 cut(s) 1087, 1837, 1840
Tsp45I GTSAC 2 cut(s) 370, 1318
TspDTI ATGAA 4 cut(s) 636, 1343, 1703, 1959
TspRI CASTG 1 cut(s) 1294
Tth111I GACNNNGTC 2 cut(s) 170, 1316
Van91I CCANNNNNTGG 1 cut(s) 837
Vha464I CTTAAG 2 cut(s) 530, 1409
VpaK11BI GGWCC 3 cut(s) 255, 261, 471
VspI ATTAAT 1 cut(s) 1755
XapI RAATTY 1 cut(s) 1184
XceI RCATGY 2 cut(s) 1732, 1984
XcmI CCANNNNNNNNNTGG 2 cut(s) 223, 271
XhoI CTCGAG 3 cut(s) 128, 884, 1142
XmiI GTMKAC 2 cut(s) 1178, 1977
XmnI GAANNNNTTC 2 cut(s) 863, 1521
XspI CTAG 3 cut(s) 438, 1734, 1964
Zsp2I ATGCAT 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.