Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

16317291 .. 16317836

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1081900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGACCCGATTCGACTTTCAGCCTTACCTCGCCTCCGTCTCCGACTCACCTTTCAACCACAGTAACAAGGAGATCTTCTTCCGTGAGCTCATCAGGATTTCATCTTATGCTTTAGACAAAATTCGTTTCGAGAGCTTCACAGACAAAAACAAGTTCGATGCTCAACCGGAGTTTTTTATCAGGCTGGTGCCTGACAAGGTTAATAAGATCCTCTCAATCATCGACAGTGGGATCGACATGACCAAAGAAGATTTATTGAACGACTTGGGTACAATTGCAAGGTCAGGAACTAAAGAATTCATGGAGGCATTGCAAGCCGGAGCCAATGTGAGCATGATTGATCAGTTTGGTGTCGGTTTCTACTTGGCCTATCTAGTTGCTGAGAAGGTCATTGTGACCACCAAGCACAATGACGACGAGCAGTACATTTGGGAGTCACAGGCTAGTTGTTCCTTCACTATCACAAGGGATGTCAATGGCGAACCTCTCGGCAGGGGCACCAAGATCACCCTCTTCCTCAAGGAGGATCAGTTGGGGTATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

182

Amino Acids

20.64

Weight (kDa)

4.89

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	187, 497
AclWI	GGATC	3 cut(s)	202, 239, 534
AcsI	RAATTY	2 cut(s)	120, 296
AfaI	GTAC	2 cut(s)	271, 425
AfiI	CCNNNNNNNGG	1 cut(s)	523
AgsI	TTSAA	2 cut(s)	55, 259
AluBI	AGCT	2 cut(s)	88, 135
AluI	AGCT	2 cut(s)	88, 135
Alw21I	GWGCWC	1 cut(s)	90
Alw26I	GTCTC	1 cut(s)	43
AlwI	GGATC	3 cut(s)	202, 239, 534
AoxI	GGCC	1 cut(s)	366
ApoI	RAATTY	2 cut(s)	120, 296
AsuHPI	GGTGA	2 cut(s)	39, 499
BaeGI	GKGCMC	1 cut(s)	500
BanI	GGYRCC	2 cut(s)	187, 497
BanII	GRGCYC	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	340
BcoDI	GTCTC	1 cut(s)	43
BfaI	CTAG	2 cut(s)	374, 444
BglII	AGATCT	1 cut(s)	72
BmiI	GGNNCC	3 cut(s)	189, 322, 499
BmsI	GCATC	1 cut(s)	148
BpuEI	CTTGAG	1 cut(s)	503
BsaWI	WCCGGW	1 cut(s)	166
BsaXI	ACNNNNNCTCC	6 cut(s)	17, 47, 312, 342, 515, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse3DI	GCAATG	1 cut(s)	308
BseGI	GGATG	1 cut(s)	475
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseMI	GCAATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	372
BseSI	GKGCMC	1 cut(s)	500
BshFI	GGCC	1 cut(s)	368
BshNI	GGYRCC	2 cut(s)	187, 497
BsiHKAI	GWGCWC	1 cut(s)	90
BsiSI	CCGG	2 cut(s)	167, 318
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	43
BsmBI	CGTCTC	1 cut(s)	43
BsnI	GGCC	1 cut(s)	368
Bsp1286I	GDGCHC	2 cut(s)	90, 500
Bsp143I	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
BspANI	GGCC	1 cut(s)	368
BspCNI	CTCAG	1 cut(s)	373
BspLI	GGNNCC	3 cut(s)	189, 322, 499
BspPI	GGATC	3 cut(s)	202, 239, 534
BspT107I	GGYRCC	2 cut(s)	187, 497
BsrDI	GCAATG	1 cut(s)	308
BssMI	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
Bst4CI	ACNGT	2 cut(s)	62, 227
Bst6I	CTCTTC	1 cut(s)	518
BstC8I	GCNNGC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	381
BstENI	CCTNNNNNAGG	1 cut(s)	521
BstF5I	GGATG	1 cut(s)	475
BstKTI	GATC	6 cut(s)	75, 210, 234, 343, 507, 529
BstMAI	GTCTC	1 cut(s)	43
BstMBI	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
BstMWI	GCNNNNNNNGC	1 cut(s)	314
BstSLI	GKGCMC	1 cut(s)	500
BstX2I	RGATCY	2 cut(s)	72, 207
BstYI	RGATCY	2 cut(s)	72, 207
BsuRI	GGCC	1 cut(s)	368
BtsCI	GGATG	1 cut(s)	475
BtsIMutI	CAGTG	1 cut(s)	232
Cac8I	GCNNGC	1 cut(s)	315
Csp6I	GTAC	2 cut(s)	270, 424
CviAII	CATG	3 cut(s)	238, 301, 334
CviJI	RGCY	8 cut(s)	22, 88, 135, 184, 317, 323, 368, 443
CviKI_1	RGCY	8 cut(s)	22, 88, 135, 184, 317, 323, 368, 443
CviQI	GTAC	2 cut(s)	270, 424
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	6 cut(s)	74, 209, 233, 342, 506, 528
DpnII	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
Eam1104I	CTCTTC	1 cut(s)	518
EarI	CTCTTC	1 cut(s)	518
Ecl136II	GAGCTC	1 cut(s)	88
Eco24I	GRGCYC	1 cut(s)	90
Eco53kI	GAGCTC	1 cut(s)	88
EcoICRI	GAGCTC	1 cut(s)	88
EcoNI	CCTNNNNNAGG	1 cut(s)	521
EcoRI	GAATTC	1 cut(s)	296
EcoT38I	GRGCYC	1 cut(s)	90
Esp3I	CGTCTC	1 cut(s)	43
FaeI	CATG	3 cut(s)	241, 304, 337
FaiI	YATR	5 cut(s)	108, 239, 302, 335, 544
FalI	AAGNNNNNCTT	2 cut(s)	59, 91
FatI	CATG	3 cut(s)	237, 300, 333
FbaI	TGATCA	1 cut(s)	340
FokI	GGATG	1 cut(s)	482
FriOI	GRGCYC	1 cut(s)	90
FspBI	CTAG	2 cut(s)	374, 444
HaeIII	GGCC	1 cut(s)	368
HapII	CCGG	2 cut(s)	167, 318
Hin1II	CATG	3 cut(s)	241, 304, 337
HinfI	GANTC	3 cut(s)	9, 44, 434
HpaII	CCGG	2 cut(s)	167, 318
HphI	GGTGA	2 cut(s)	39, 499
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	3 cut(s)	94, 130, 285
Hpy99I	CGWCG	1 cut(s)	419
HpyAV	CCTTC	2 cut(s)	379, 463
HpyCH4III	ACNGT	2 cut(s)	62, 227
HpyCH4V	TGCA	2 cut(s)	278, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	314
HpyF3I	CTNAG	1 cut(s)	381
Hsp92II	CATG	3 cut(s)	241, 304, 337
Ksp22I	TGATCA	1 cut(s)	340
Kzo9I	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
LmnI	GCTCC	1 cut(s)	320
LpnPI	CCDG	9 cut(s)	79, 166, 170, 180, 204, 270, 331, 425, 478
LweI	GCATC	1 cut(s)	148
MaeI	CTAG	2 cut(s)	374, 444
MaeIII	GTNAC	3 cut(s)	62, 394, 435
MalI	GATC	6 cut(s)	74, 209, 233, 342, 506, 528
MboI	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
MboII	GAAGA	4 cut(s)	67, 70, 260, 505
MfeI	CAATTG	1 cut(s)	273
MflI	RGATCY	2 cut(s)	72, 207
MhlI	GDGCHC	2 cut(s)	90, 500
MluCI	AATT	3 cut(s)	120, 273, 296
MlyI	GAGTC	2 cut(s)	38, 443
MmeI	TCCRAC	1 cut(s)	66
MnlI	CCTC	8 cut(s)	38, 43, 221, 298, 495, 517, 521, 527
MseI	TTAA	1 cut(s)	201
MspI	CCGG	2 cut(s)	167, 318
MunI	CAATTG	1 cut(s)	273
MwoI	GCNNNNNNNGC	1 cut(s)	314
NdeII	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
NlaIII	CATG	3 cut(s)	241, 304, 337
NlaIV	GGNNCC	3 cut(s)	189, 322, 499
NmeAIII	GCCGAG	1 cut(s)	468
NmuCI	GTSAC	2 cut(s)	394, 435
PfeI	GAWTC	1 cut(s)	9
PleI	GAGTC	2 cut(s)	38, 442
PpsI	GAGTC	2 cut(s)	38, 442
Psp124BI	GAGCTC	1 cut(s)	90
PspN4I	GGNNCC	3 cut(s)	189, 322, 499
PsuI	RGATCY	2 cut(s)	72, 207
RsaI	GTAC	2 cut(s)	271, 425
RsaNI	GTAC	2 cut(s)	270, 424
SacI	GAGCTC	1 cut(s)	90
SaqAI	TTAA	1 cut(s)	201
Sau3AI	GATC	6 cut(s)	72, 207, 231, 340, 504, 526
SchI	GAGTC	2 cut(s)	38, 443
SduI	GDGCHC	2 cut(s)	90, 500
SetI	ASST	8 cut(s)	30, 52, 90, 137, 201, 284, 390, 487
SfaNI	GCATC	1 cut(s)	148
SmlI	CTYRAG	1 cut(s)	518
SmoI	CTYRAG	1 cut(s)	518
Sse9I	AATT	3 cut(s)	120, 273, 296
SspMI	CTAG	2 cut(s)	374, 444
SstI	GAGCTC	1 cut(s)	90
TaaI	ACNGT	2 cut(s)	62, 227
TaqI	TCGA	5 cut(s)	12, 129, 156, 222, 234
TasI	AATT	3 cut(s)	120, 273, 296
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	9
Tru1I	TTAA	1 cut(s)	201
Tru9I	TTAA	1 cut(s)	201
TscAI	CASTG	1 cut(s)	232
TseFI	GTSAC	2 cut(s)	394, 435
Tsp45I	GTSAC	2 cut(s)	394, 435
TspDTI	ATGAA	3 cut(s)	90, 289, 531
TspGWI	ACGGA	2 cut(s)	25, 71
TspRI	CASTG	1 cut(s)	232
XagI	CCTNNNNNAGG	1 cut(s)	521
XapI	RAATTY	2 cut(s)	120, 296
XspI	CTAG	2 cut(s)	374, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.