Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

63888095 .. 63888754

Gene Structure 660 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG425100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGAGGCATTGGCATCCGGAGCGTCTGATGTGAGCATGATTGGAAAGTTTGGTATTGGCTTTTACTCGGCATATCTTGTTGCGGAGAAGTTCATTGTGACTACAAAGCACAATGACGATGAACAATACATTTGGGAATCCCATGCTGGTGGTTCCTTCACCGTGACAAGGGATGTCAATGGTGAGCAGCTTGGAAGGGGAAACAAGATTACCCTCTTTCTCAAGGAGGACCAGTTGGAATACTTGGAAGAGATGAGGATCACAGACCTTGTGAAGAAGCATTCCGAATTCATCAGCTATCCCATCTACTTGTGGATTGAGGTCGAGGAAGCCAAGAAGGAAGAGGAAGGAGCTATTGGGGAAGTTGACGAGGATAAGGAGAAAGAATCAAAGAAGAATAAGGAAGTTTCTCACGAATGGGAACTCATCAACAAGCAGAAACCCATCTGGCTGCGCAAGCCGGAGGAGATTACCAAGGGTGAGTATGCTTTATTCTACAAGAGCTTGACCTATGATTGGGAGGACTACCTTGCAGTGAAGCATTTCTCTGTTGAAGGCCAGCTGAATTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

191

Amino Acids

22.15

Weight (kDa)

4.85

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	80 - 189	2.2e-32	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	455
AccIII	TCCGGA	1 cut(s)	17
AciI	CCGC	1 cut(s)	83
AclWI	GGATC	1 cut(s)	266
AcsI	RAATTY	2 cut(s)	287, 565
AfiI	CCNNNNNNNGG	2 cut(s)	168, 516
AgsI	TTSAA	1 cut(s)	554
AjuI	GAANNNNNNNTTGG	2 cut(s)	339, 371
AluBI	AGCT	5 cut(s)	190, 297, 353, 504, 562
AluI	AGCT	5 cut(s)	190, 297, 353, 504, 562
AlwI	GGATC	1 cut(s)	266
Aor13HI	TCCGGA	1 cut(s)	17
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	2 cut(s)	187, 451
ApoI	RAATTY	2 cut(s)	287, 565
Asp700I	GAANNNNTTC	1 cut(s)	542
AspLEI	GCGC	1 cut(s)	456
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	3 cut(s)	151, 194, 491
AvaII	GGWCC	1 cut(s)	229
BbvI	GCAGC	2 cut(s)	199, 438
BccI	CCATC	2 cut(s)	311, 452
BfaI	CTAG	1 cut(s)	570
BisI	GCNGC	2 cut(s)	188, 452
BlsI	GCNGC	2 cut(s)	189, 453
Bme18I	GGWCC	1 cut(s)	229
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	1 cut(s)	154
BmsI	GCATC	1 cut(s)	23
BpuEI	CTTGAG	1 cut(s)	206
BsaBI	GATNNNNATC	1 cut(s)	257
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	1 cut(s)	17
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	2 cut(s)	168, 516
Bse1I	ACTGG	1 cut(s)	232
Bse8I	GATNNNNATC	1 cut(s)	257
BseAI	TCCGGA	1 cut(s)	17
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	2 cut(s)	14, 178
BseJI	GATNNNNATC	1 cut(s)	257
BseLI	CCNNNNNNNGG	2 cut(s)	168, 516
BseNI	ACTGG	1 cut(s)	232
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	2 cut(s)	199, 438
BshFI	GGCC	1 cut(s)	558
BsiSI	CCGG	2 cut(s)	18, 461
BslI	CCNNNNNNNGG	2 cut(s)	168, 516
BsmI	GAATGC	1 cut(s)	280
BsnI	GGCC	1 cut(s)	558
Bsp13I	TCCGGA	1 cut(s)	17
Bsp143I	GATC	1 cut(s)	258
BspACI	CCGC	1 cut(s)	83
BspANI	GGCC	1 cut(s)	558
BspEI	TCCGGA	1 cut(s)	17
BspLI	GGNNCC	1 cut(s)	154
BspPI	GGATC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	232
BssECI	CCNNGG	1 cut(s)	474
BssMI	GATC	1 cut(s)	258
BssT1I	CCWWGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	163
Bst6I	CTCTTC	2 cut(s)	243, 336
BstC8I	GCNNGC	2 cut(s)	458, 560
BstF5I	GGATG	2 cut(s)	14, 178
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	1 cut(s)	261
BstMBI	GATC	1 cut(s)	258
BstMWI	GCNNNNNNNGC	2 cut(s)	20, 457
BstV1I	GCAGC	2 cut(s)	199, 438
BstXI	CCANNNNNNTGG	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	2 cut(s)	14, 178
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	1 cut(s)	540
Cac8I	GCNNGC	2 cut(s)	458, 560
CfoI	GCGC	1 cut(s)	456
Cfr13I	GGNCC	1 cut(s)	229
CseI	GACGC	1 cut(s)	12
CviAII	CATG	2 cut(s)	37, 143
DpnI	GATC	1 cut(s)	260
DpnII	GATC	1 cut(s)	258
Eam1104I	CTCTTC	2 cut(s)	243, 336
EarI	CTCTTC	2 cut(s)	243, 336
Eco130I	CCWWGG	1 cut(s)	474
Eco47I	GGWCC	1 cut(s)	229
EcoRI	GAATTC	2 cut(s)	287, 565
EcoT14I	CCWWGG	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	474
FaeI	CATG	2 cut(s)	40, 146
FaiI	YATR	5 cut(s)	38, 73, 144, 486, 513
FatI	CATG	2 cut(s)	36, 142
Fnu4HI	GCNGC	2 cut(s)	188, 452
FokI	GGATG	1 cut(s)	185
Fsp4HI	GCNGC	2 cut(s)	188, 452
FspBI	CTAG	1 cut(s)	570
FspI	TGCGCA	1 cut(s)	455
GlaI	GCGC	1 cut(s)	455
GluI	GCNGC	2 cut(s)	188, 452
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	18, 461
HgaI	GACGC	1 cut(s)	12
HhaI	GCGC	1 cut(s)	456
Hin1II	CATG	2 cut(s)	40, 146
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	367
HindII	GTYRAC	1 cut(s)	367
HinfI	GANTC	2 cut(s)	137, 386
HpaII	CCGG	2 cut(s)	18, 461
HphI	GGTGA	3 cut(s)	151, 194, 491
Hpy166II	GTNNAC	1 cut(s)	367
Hpy188I	TCNGA	2 cut(s)	28, 286
Hpy188III	TCNNGA	2 cut(s)	18, 413
Hpy8I	GTNNAC	1 cut(s)	367
HpyAV	CCTTC	5 cut(s)	166, 189, 331, 341, 548
HpyCH4III	ACNGT	1 cut(s)	163
HpyCH4V	TGCA	1 cut(s)	533
HpyF10VI	GCNNNNNNNGC	2 cut(s)	20, 457
Hsp92II	CATG	2 cut(s)	40, 146
HspAI	GCGC	1 cut(s)	454
Kpn2I	TCCGGA	1 cut(s)	17
Kzo9I	GATC	1 cut(s)	258
LmnI	GCTCC	2 cut(s)	20, 350
LpnPI	CCDG	6 cut(s)	31, 132, 245, 433, 474, 572
Lsp1109I	GCAGC	2 cut(s)	199, 438
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	570
MaeIII	GTNAC	2 cut(s)	97, 163
MalI	GATC	1 cut(s)	260
MboI	GATC	1 cut(s)	258
MboII	GAAGA	4 cut(s)	260, 286, 353, 406
MluCI	AATT	2 cut(s)	287, 565
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	220, 224, 249, 313, 319, 337, 364, 457, 514
MroI	TCCGGA	1 cut(s)	17
MroXI	GAANNNNTTC	1 cut(s)	542
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	562
MspI	CCGG	2 cut(s)	18, 461
Mva1269I	GAATGC	1 cut(s)	280
MwoI	GCNNNNNNNGC	2 cut(s)	20, 457
NdeII	GATC	1 cut(s)	258
NlaIII	CATG	2 cut(s)	40, 146
NlaIV	GGNNCC	1 cut(s)	154
NmeAIII	GCCGAG	1 cut(s)	47
NmuCI	GTSAC	2 cut(s)	97, 163
NsbI	TGCGCA	1 cut(s)	455
PctI	GAATGC	1 cut(s)	280
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	2 cut(s)	137, 386
PkrI	GCNGC	2 cut(s)	189, 453
PspN4I	GGNNCC	1 cut(s)	154
PspPI	GGNCC	1 cut(s)	229
PvuII	CAGCTG	1 cut(s)	562
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	2 cut(s)	188, 452
Sau3AI	GATC	1 cut(s)	258
Sau96I	GGNCC	1 cut(s)	229
SetI	ASST	9 cut(s)	192, 270, 299, 324, 355, 506, 512, 531, 564
SfaNI	GCATC	1 cut(s)	23
SinI	GGWCC	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	147
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	2 cut(s)	287, 565
SsiI	CCGC	1 cut(s)	83
SspMI	CTAG	1 cut(s)	570
StyI	CCWWGG	1 cut(s)	474
TaaI	ACNGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	287, 565
TfiI	GAWTC	2 cut(s)	137, 386
TscAI	CASTG	1 cut(s)	540
TseFI	GTSAC	2 cut(s)	97, 163
TseI	GCWGC	2 cut(s)	187, 451
Tsp45I	GTSAC	2 cut(s)	97, 163
TspDTI	ATGAA	3 cut(s)	82, 135, 280
TspRI	CASTG	1 cut(s)	540
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	287, 565
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.