Rmu_co8309643.1_g000001

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8309643.1
OG0000335
Physical Location & Seq
Forward (+)
619 .. 909
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8309643.1_g000001.1.cds

Sequence Viewer

Length: 291 bp
atggttgaaattgagatggaagctgacgttgagaccttcgcattccaggcggagatcaaccaccttctgagtttgatcatcaacactttctacagcaacaaagagattttcctccgcgagctcatcagcaatgcctctgatgcattggacaagatccgattcgagagcttgactgatcccagcaagctcgagtctcaacccgaactatgcatccggatcatcccagacaaggtcaacaaaaccctcaccatcttcgacaccggcgttggcatgaccaaagcaggtacttaa

Protein Analysis

96

Amino Acids

10.82

Weight (kDa)

4.54

Isoelectric Point (pI)

34.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 272
AccII CGCG 1 cut(s) 117
AccIII TCCGGA 1 cut(s) 213
AciI CCGC 2 cut(s) 50, 115
AclWI GGATC 3 cut(s) 148, 170, 224
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 229
AgsI TTSAA 1 cut(s) 8
AjnI CCWGG 1 cut(s) 45
AloI GAACNNNNNNTCC 2 cut(s) 195, 227
AluBI AGCT 4 cut(s) 23, 121, 168, 187
AluI AGCT 4 cut(s) 23, 121, 168, 187
Alw21I GWGCWC 1 cut(s) 123
Alw26I GTCTC 2 cut(s) 26, 198
AlwI GGATC 3 cut(s) 148, 170, 224
Ama87I CYCGRG 1 cut(s) 188
Aor13HI TCCGGA 1 cut(s) 213
AsuHPI GGTGA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 188
BanII GRGCYC 1 cut(s) 123
Bbv12I GWGCWC 1 cut(s) 123
BccI CCATC 2 cut(s) 10, 257
BciT130I CCWGG 1 cut(s) 47
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 26, 198
BfmI CTRYAG 1 cut(s) 91
BfuAI ACCTGC 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 47
BmeT110I CYCGRG 1 cut(s) 188
BmrFI CCNGG 1 cut(s) 47
BmsI GCATC 2 cut(s) 130, 219
BsaI GGTCTC 1 cut(s) 26
BsaWI WCCGGW 1 cut(s) 213
Bsc4I CCNNNNNNNGG 1 cut(s) 229
Bse118I RCCGGY 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 136
BseAI TCCGGA 1 cut(s) 213
BseBI CCWGG 1 cut(s) 47
BseGI GGATG 2 cut(s) 210, 219
BseLI CCNNNNNNNGG 1 cut(s) 229
BseMI GCAATG 1 cut(s) 136
BseMII CTCAG 1 cut(s) 59
BseYI CCCAGC 1 cut(s) 179
Bsh1236I CGCG 1 cut(s) 117
BsiHKAI GWGCWC 1 cut(s) 123
BsiHKCI CYCGRG 1 cut(s) 188
BsiSI CCGG 2 cut(s) 214, 261
BslI CCNNNNNNNGG 1 cut(s) 229
BsmAI GTCTC 2 cut(s) 26, 198
BsmI GAATGC 1 cut(s) 41
Bso31I GGTCTC 1 cut(s) 26
BsoBI CYCGRG 1 cut(s) 188
Bsp1286I GDGCHC 1 cut(s) 123
Bsp13I TCCGGA 1 cut(s) 213
Bsp143I GATC 5 cut(s) 54, 75, 153, 175, 216
BspACI CCGC 2 cut(s) 50, 115
BspCNI CTCAG 1 cut(s) 60
BspEI TCCGGA 1 cut(s) 213
BspFNI CGCG 1 cut(s) 117
BspMI ACCTGC 1 cut(s) 272
BspPI GGATC 3 cut(s) 148, 170, 224
BspTNI GGTCTC 1 cut(s) 26
BsrDI GCAATG 1 cut(s) 136
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssMI GATC 5 cut(s) 54, 75, 153, 175, 216
Bst2UI CCWGG 1 cut(s) 47
BstC8I GCNNGC 2 cut(s) 119, 185
BstDEI CTNAG 1 cut(s) 68
BstF5I GGATG 2 cut(s) 210, 219
BstFNI CGCG 1 cut(s) 117
BstKTI GATC 5 cut(s) 57, 78, 156, 178, 219
BstMAI GTCTC 2 cut(s) 26, 198
BstMBI GATC 5 cut(s) 54, 75, 153, 175, 216
BstMWI GCNNNNNNNGC 2 cut(s) 47, 140
BstNI CCWGG 1 cut(s) 47
BstSCI CCNGG 1 cut(s) 45
BstSFI CTRYAG 1 cut(s) 91
BstUI CGCG 1 cut(s) 117
BstX2I RGATCY 1 cut(s) 153
BstYI RGATCY 1 cut(s) 153
BtsCI GGATG 2 cut(s) 210, 219
BveI ACCTGC 1 cut(s) 272
Cac8I GCNNGC 2 cut(s) 119, 185
Cfr10I RCCGGY 1 cut(s) 260
Csp6I GTAC 1 cut(s) 285
CviAII CATG 1 cut(s) 271
CviJI RGCY 4 cut(s) 23, 121, 168, 187
CviKI_1 RGCY 4 cut(s) 23, 121, 168, 187
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 1 cut(s) 68
DpnI GATC 5 cut(s) 56, 77, 155, 177, 218
DpnII GATC 5 cut(s) 54, 75, 153, 175, 216
EciI GGCGGA 1 cut(s) 65
Ecl136II GAGCTC 1 cut(s) 121
Eco24I GRGCYC 1 cut(s) 123
Eco31I GGTCTC 1 cut(s) 26
Eco53kI GAGCTC 1 cut(s) 121
Eco88I CYCGRG 1 cut(s) 188
EcoICRI GAGCTC 1 cut(s) 121
EcoRII CCWGG 1 cut(s) 45
EcoT22I ATGCAT 2 cut(s) 145, 212
EcoT38I GRGCYC 1 cut(s) 123
FaeI CATG 1 cut(s) 274
FaiI YATR 2 cut(s) 208, 272
FatI CATG 1 cut(s) 270
FbaI TGATCA 1 cut(s) 75
FokI GGATG 2 cut(s) 197, 206
FriOI GRGCYC 1 cut(s) 123
GsaI CCCAGC 1 cut(s) 183
HapII CCGG 2 cut(s) 214, 261
Hin1II CATG 1 cut(s) 274
HincII GTYRAC 1 cut(s) 235
HindII GTYRAC 1 cut(s) 235
HinfI GANTC 2 cut(s) 159, 191
HpaII CCGG 2 cut(s) 214, 261
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 235
Hpy188I TCNGA 3 cut(s) 69, 139, 158
Hpy188III TCNNGA 2 cut(s) 163, 214
Hpy8I GTNNAC 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 46, 74
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 2 cut(s) 143, 210
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 140
HpyF3I CTNAG 1 cut(s) 68
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 1 cut(s) 274
Kpn2I TCCGGA 1 cut(s) 213
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 5 cut(s) 54, 75, 153, 175, 216
LpnPI CCDG 7 cut(s) 32, 59, 193, 227, 237, 267, 274
LweI GCATC 2 cut(s) 130, 219
MaeII ACGT 1 cut(s) 27
MalI GATC 5 cut(s) 56, 77, 155, 177, 218
MboI GATC 5 cut(s) 54, 75, 153, 175, 216
MboII GAAGA 1 cut(s) 244
MflI RGATCY 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 123
MluCI AATT 1 cut(s) 9
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 3 cut(s) 122, 145, 254
Mph1103I ATGCAT 2 cut(s) 145, 212
MroI TCCGGA 1 cut(s) 213
MseI TTAA 1 cut(s) 289
MspI CCGG 2 cut(s) 214, 261
MspR9I CCNGG 1 cut(s) 47
Mva1269I GAATGC 1 cut(s) 41
MvaI CCWGG 1 cut(s) 47
MvnI CGCG 1 cut(s) 117
MwoI GCNNNNNNNGC 2 cut(s) 47, 140
NdeII GATC 5 cut(s) 54, 75, 153, 175, 216
NlaIII CATG 1 cut(s) 274
NsiI ATGCAT 2 cut(s) 145, 212
PaeR7I CTCGAG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 159
PflFI GACNNNGTC 1 cut(s) 230
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
Psp124BI GAGCTC 1 cut(s) 123
Psp6I CCWGG 1 cut(s) 45
PspFI CCCAGC 1 cut(s) 179
PspGI CCWGG 1 cut(s) 45
PspXI VCTCGAGB 1 cut(s) 188
PsuI RGATCY 1 cut(s) 153
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SacI GAGCTC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 289
Sau3AI GATC 5 cut(s) 54, 75, 153, 175, 216
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 47
SduI GDGCHC 1 cut(s) 123
SetI ASST 9 cut(s) 25, 30, 38, 66, 123, 170, 189, 234, 286
SfaNI GCATC 2 cut(s) 130, 219
SfcI CTRYAG 1 cut(s) 91
Sfr274I CTCGAG 1 cut(s) 188
SgrAI CRCCGGYG 1 cut(s) 260
SlaI CTCGAG 1 cut(s) 188
SmlI CTYRAG 1 cut(s) 188
SmoI CTYRAG 1 cut(s) 188
Sse9I AATT 1 cut(s) 9
SsiI CCGC 2 cut(s) 50, 115
SstI GAGCTC 1 cut(s) 123
StyD4I CCNGG 1 cut(s) 45
TaiI ACGT 1 cut(s) 30
TaqI TCGA 3 cut(s) 162, 189, 255
TasI AATT 1 cut(s) 9
TfiI GAWTC 1 cut(s) 159
Tru1I TTAA 1 cut(s) 289
Tru9I TTAA 1 cut(s) 289
Tth111I GACNNNGTC 1 cut(s) 230
XhoI CTCGAG 1 cut(s) 188
Zsp2I ATGCAT 2 cut(s) 145, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.