Rmu_sc0003392.1_g000006

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003392.1
Physical Location & Seq
Reverse (-)
20117 .. 21178
1062 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003392.1_g000006.1.cds

Sequence Viewer

Length: 798 bp
atgaaaaacattaagctatatgtgaggagggtgtttattatggacaactgcgaggagctcattccagagtatcttggatttgtcaagggtgttgtggactccgatgacttgccactcaacatttctcgtgagatgcttcaacagaacaagatcctgaaggtgatcaggaagaaccttatgaagaagtgcattgagatgttgaatgggattgctgagaacaaagaggattatgccaagttttatgagtcatttttcaaagaacttgacgagtatgatgggaagaagctcgtgtctgctacaaaggaaggtctgaagcttgacgatgaaactgaggaagagaagaagaagaagtcttttgagaatctttgcaagacaattaaagacatcttgggagacagggttgagaaggtggttgtgtccgatagaattgtcaactcaccttgctgcttggtcactggtgaatatggatggagtgcaaacatggagaggattatgaaggctcaggcactcagggacaacagcatgggtgctcacatgtccagcaagaagaccatggaaatcaaccctgacaatggcatcatggaggagctgaggaagagagccaaagctgacaaaaatgacaagtccgtcaaggaccttgtgctgctgctgtttgagacagctctgctgacatctggattcagccttgatgagccgaagctggggcttagcattgatgaagacgagactgttgaggatgcggacatgcctgagctggaggatgcggctgaggagagcaaaatggaggaagtggactaa

Protein Analysis

265

Amino Acids

30.33

Weight (kDa)

4.8

Isoelectric Point (pI)

40.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 626
AciI CCGC 2 cut(s) 740, 764
AclWI GGATC 1 cut(s) 145
AcuI CTGAAG 2 cut(s) 176, 332
AfiI CCNNNNNNNGG 2 cut(s) 572, 701
AflIII ACRYGT 1 cut(s) 534
AgsI TTSAA 3 cut(s) 140, 202, 256
AluBI AGCT 9 cut(s) 16, 58, 286, 316, 589, 608, 662, 700, 754
AluI AGCT 9 cut(s) 16, 58, 286, 316, 589, 608, 662, 700, 754
Alw21I GWGCWC 2 cut(s) 60, 532
Alw26I GTCTC 3 cut(s) 387, 650, 719
AlwI GGATC 1 cut(s) 145
ApeKI GCWGC 3 cut(s) 444, 643, 646
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 3 cut(s) 172, 429, 470
AvaII GGWCC 1 cut(s) 634
BanII GRGCYC 1 cut(s) 60
BauI CACGAG 2 cut(s) 126, 287
BbsI GAAGAC 2 cut(s) 554, 726
Bbv12I GWGCWC 2 cut(s) 60, 532
BbvCI CCTCAGC 2 cut(s) 590, 768
BbvI GCAGC 3 cut(s) 431, 630, 633
BccI CCATC 2 cut(s) 269, 462
BclI TGATCA 1 cut(s) 162
BcoDI GTCTC 3 cut(s) 387, 650, 719
BisI GCNGC 4 cut(s) 445, 644, 647, 765
BlpI GCTNAGC 1 cut(s) 707
BlsI GCNGC 4 cut(s) 446, 645, 648, 766
Bme18I GGWCC 1 cut(s) 634
BmgT120I GGNCC 1 cut(s) 634
BmsI GCATC 4 cut(s) 123, 585, 727, 751
BpiI GAAGAC 2 cut(s) 554, 726
BpmI CTGGAG 1 cut(s) 776
Bpu10I CCTNAGC 4 cut(s) 501, 590, 750, 768
Bpu1102I GCTNAGC 1 cut(s) 707
BsaJI CCNNGG 1 cut(s) 552
BsaXI ACNNNNNCTCC 2 cut(s) 384, 414
Bsc4I CCNNNNNNNGG 2 cut(s) 572, 701
Bse1I ACTGG 1 cut(s) 460
BseDI CCNNGG 1 cut(s) 552
BseGI GGATG 3 cut(s) 473, 742, 766
BseLI CCNNNNNNNGG 2 cut(s) 572, 701
BseMII CTCAG 7 cut(s) 204, 321, 515, 523, 581, 741, 759
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 4 cut(s) 40, 68, 599, 785
BseXI GCAGC 3 cut(s) 431, 630, 633
BseYI CCCAGC 1 cut(s) 700
BsiHKAI GWGCWC 2 cut(s) 60, 532
BslFI GGGAC 1 cut(s) 527
BslI CCNNNNNNNGG 2 cut(s) 572, 701
BsmAI GTCTC 3 cut(s) 387, 650, 719
BsmFI GGGAC 1 cut(s) 527
Bsp1286I GDGCHC 2 cut(s) 60, 532
Bsp143I GATC 2 cut(s) 150, 162
Bsp1720I GCTNAGC 1 cut(s) 707
Bsp19I CCATGG 1 cut(s) 552
BspACI CCGC 2 cut(s) 740, 764
BspCNI CTCAG 7 cut(s) 205, 322, 514, 522, 582, 742, 760
BspPI GGATC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 460
BssECI CCNNGG 1 cut(s) 552
BssMI GATC 2 cut(s) 150, 162
BssSI CACGAG 2 cut(s) 126, 287
BssT1I CCWWGG 1 cut(s) 552
Bst2BI CACGAG 2 cut(s) 126, 287
Bst4CI ACNGT 1 cut(s) 730
Bst6I CTCTTC 2 cut(s) 330, 590
BstDEI CTNAG 8 cut(s) 213, 330, 501, 509, 590, 707, 750, 768
BstDSI CCRYGG 1 cut(s) 552
BstF5I GGATG 3 cut(s) 473, 742, 766
BstKTI GATC 2 cut(s) 153, 165
BstMAI GTCTC 3 cut(s) 387, 650, 719
BstMBI GATC 2 cut(s) 150, 162
BstNSI RCATGY 2 cut(s) 538, 748
BstV1I GCAGC 3 cut(s) 431, 630, 633
BstV2I GAAGAC 2 cut(s) 554, 726
BstX2I RGATCY 1 cut(s) 150
BstYI RGATCY 1 cut(s) 150
BtgI CCRYGG 1 cut(s) 552
BtsCI GGATG 3 cut(s) 473, 742, 766
BtsIMutI CAGTG 1 cut(s) 453
Cfr13I GGNCC 1 cut(s) 634
CviAII CATG 6 cut(s) 481, 523, 535, 553, 580, 745
DdeI CTNAG 8 cut(s) 213, 330, 501, 509, 590, 707, 750, 768
DpnI GATC 2 cut(s) 152, 164
DpnII GATC 2 cut(s) 150, 162
DrdI GACNNNNNNGTC 1 cut(s) 626
DseDI GACNNNNNNGTC 1 cut(s) 626
Eam1104I CTCTTC 2 cut(s) 330, 590
EarI CTCTTC 2 cut(s) 330, 590
Ecl136II GAGCTC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 552
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 634
Eco53kI GAGCTC 1 cut(s) 58
Eco57I CTGAAG 2 cut(s) 176, 332
EcoICRI GAGCTC 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 552
EcoT38I GRGCYC 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 552
FaeI CATG 6 cut(s) 484, 526, 538, 556, 583, 748
FaqI GGGAC 1 cut(s) 527
FatI CATG 6 cut(s) 480, 522, 534, 552, 579, 744
FbaI TGATCA 1 cut(s) 162
Fnu4HI GCNGC 4 cut(s) 445, 644, 647, 765
FokI GGATG 3 cut(s) 480, 749, 773
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 4 cut(s) 445, 644, 647, 765
GluI GCNGC 4 cut(s) 445, 644, 647, 765
GsaI CCCAGC 1 cut(s) 704
GsuI CTGGAG 1 cut(s) 776
Hin1II CATG 6 cut(s) 484, 526, 538, 556, 583, 748
HincII GTYRAC 1 cut(s) 433
HindII GTYRAC 1 cut(s) 433
HindIII AAGCTT 1 cut(s) 314
HinfI GANTC 4 cut(s) 98, 245, 361, 678
HphI GGTGA 3 cut(s) 172, 429, 470
Hpy166II GTNNAC 3 cut(s) 97, 433, 793
Hpy188I TCNGA 3 cut(s) 103, 312, 421
Hpy188III TCNNGA 5 cut(s) 65, 128, 154, 166, 675
Hpy8I GTNNAC 3 cut(s) 97, 433, 793
HpyAV CCTTC 4 cut(s) 151, 299, 400, 490
HpyCH4III ACNGT 1 cut(s) 730
HpyCH4V TGCA 3 cut(s) 189, 369, 476
HpyF3I CTNAG 8 cut(s) 213, 330, 501, 509, 590, 707, 750, 768
Hsp92II CATG 6 cut(s) 484, 526, 538, 556, 583, 748
Ksp22I TGATCA 1 cut(s) 162
Kzo9I GATC 2 cut(s) 150, 162
LmnI GCTCC 2 cut(s) 55, 586
Lsp1109I GCAGC 3 cut(s) 431, 630, 633
LweI GCATC 4 cut(s) 123, 585, 727, 751
MaeIII GTNAC 1 cut(s) 451
MalI GATC 2 cut(s) 152, 164
MboI GATC 2 cut(s) 150, 162
MflI RGATCY 1 cut(s) 150
MhlI GDGCHC 2 cut(s) 60, 532
MluCI AATT 2 cut(s) 375, 426
MlyI GAGTC 2 cut(s) 92, 254
MseI TTAA 2 cut(s) 12, 378
MslI CAYNNNNRTG 1 cut(s) 194
NcoI CCATGG 1 cut(s) 552
NdeII GATC 2 cut(s) 150, 162
NlaIII CATG 6 cut(s) 484, 526, 538, 556, 583, 748
NmuCI GTSAC 1 cut(s) 451
NspI RCATGY 2 cut(s) 538, 748
PciI ACATGT 1 cut(s) 534
PfeI GAWTC 2 cut(s) 361, 678
PkrI GCNGC 4 cut(s) 446, 645, 648, 766
PleI GAGTC 2 cut(s) 92, 253
PpsI GAGTC 2 cut(s) 92, 253
PpuMI RGGWCCY 1 cut(s) 634
PscI ACATGT 1 cut(s) 534
Psp124BI GAGCTC 1 cut(s) 60
Psp5II RGGWCCY 1 cut(s) 634
PspFI CCCAGC 1 cut(s) 700
PspPI GGNCC 1 cut(s) 634
PspPPI RGGWCCY 1 cut(s) 634
PsuI RGATCY 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 194
SacI GAGCTC 1 cut(s) 60
SaqAI TTAA 2 cut(s) 12, 378
SatI GCNGC 4 cut(s) 445, 644, 647, 765
Sau3AI GATC 2 cut(s) 150, 162
Sau96I GGNCC 1 cut(s) 634
SchI GAGTC 2 cut(s) 92, 254
SduI GDGCHC 2 cut(s) 60, 532
SfaNI GCATC 4 cut(s) 123, 585, 727, 751
SinI GGWCC 1 cut(s) 634
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 375, 426
SsiI CCGC 2 cut(s) 740, 764
SstI GAGCTC 1 cut(s) 60
StyI CCWWGG 1 cut(s) 552
TaaI ACNGT 1 cut(s) 730
TasI AATT 2 cut(s) 375, 426
TauI GCSGC 1 cut(s) 767
TfiI GAWTC 2 cut(s) 361, 678
Tru1I TTAA 2 cut(s) 12, 378
Tru9I TTAA 2 cut(s) 12, 378
TscAI CASTG 1 cut(s) 460
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 3 cut(s) 444, 643, 646
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 5 cut(s) 17, 194, 339, 509, 732
TspGWI ACGGA 1 cut(s) 616
TspRI CASTG 1 cut(s) 460
VpaK11BI GGWCC 1 cut(s) 634
XceI RCATGY 2 cut(s) 538, 748
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.