Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

66179546 .. 66180987

Gene Structure 1442 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG438200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGAGGATCAAAGACCTTGTGAAGAAGCATTCCGAATTCATCAGCTATCCCATCTACTTGTGGATTGAGGTCGAGGAAGCCAAGAAGGAAGAGGAAGGAGCTAGTGGGGAAGTTGACGAGGATAAGGAGAAAGAATCAGAGAAGAATAACAAGAAGATTAAGGAAGTTTCCCACGAATGGGAACTCATCAACAAGCAGAAAACCATCTGGCTGCGCAAGCCGGAGGAGATTACCAAGGATGAGTATGCTTTATTGTACAAGAGCTTGACGAATGATTGGGAGGACTACCTTGCAGTGAAGCATTTTTCTGTTGAAGGCCAGCTAGAATTCAAAGCCATCCTGTTTGTTCCAAAAAGGGCTCCATTCGACATCTTTGAGTCCAGGAAGAAGAAGGTGAGAGCAATAAGGCAGTGGAGAACTTGGCTCCTCATCAAGAAGAAGGGGAATCAATATCTTTCCATGGTGGATCATGCAATAGACGAGTATGGTGGGAAAAAGATTGTGTCTGCTACAAAGGAAGGTCTGAAGCTCGATGATAAGACCGAGGAAGAGAAGCAGAAGAAAGAGGAGAAAAAGAAAATTGTGGATTCGCCTTGTGGCTTGGTGACTGGTGAATATGGAGAGGAGTTGAAGGATCAGGCAGGCAAGAAGACCATGGAGATTAACCCTGATAATGGGATCATGGAGGAGTTGAGGAAGATTGCTGAAGCTGACAAAAACGACGAGTCCACCAAGGACCTGGTGCTGCTGCTGTTTGAGACAGCTCTGTTGACATCTGGTTTCAGCCTTGATGAGCCAAAACATTTTGCGTCGAGAATTCACAGGATGTTGAAGCTTGGCATAATGGCGTATAAAGATGCTGGCATGCTTGCTTTGGAGGATGATGATGCTGAAGAGAGGGAGTTAGATGATGATGATGATGATGATGATGAGCTTGAAAGTTTTTGCAGCAATCAGTCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

321

Amino Acids

37.4

Weight (kDa)

4.98

Isoelectric Point (pI)

31.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	2 - 144	9.4e-45	Hsp90 protein
HSP90	PF00183	213 - 305	3e-23	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	215
AclWI	GGATC	4 cut(s)	14, 474, 642, 686
AcsI	RAATTY	3 cut(s)	35, 326, 816
AcuI	CTGAAG	3 cut(s)	545, 726, 912
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	3 cut(s)	177, 178, 674
AgsI	TTSAA	5 cut(s)	314, 331, 631, 832, 938
AjnI	CCWGG	2 cut(s)	380, 738
AluBI	AGCT	9 cut(s)	45, 101, 264, 322, 529, 710, 764, 835, 934
AluI	AGCT	9 cut(s)	45, 101, 264, 322, 529, 710, 764, 835, 934
Alw26I	GTCTC	1 cut(s)	752
AlwI	GGATC	4 cut(s)	14, 474, 642, 686
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	4 cut(s)	211, 745, 748, 948
ApoI	RAATTY	3 cut(s)	35, 326, 816
AspLEI	GCGC	1 cut(s)	216
AspS9I	GGNCC	1 cut(s)	736
AsuHPI	GGTGA	3 cut(s)	406, 616, 623
AvaII	GGWCC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	361
BbsI	GAAGAC	1 cut(s)	656
BbvI	GCAGC	4 cut(s)	198, 732, 735, 960
BccI	CCATC	3 cut(s)	59, 212, 344
BciT130I	CCWGG	2 cut(s)	382, 740
BcoDI	GTCTC	1 cut(s)	752
BfaI	CTAG	2 cut(s)	102, 323
BisI	GCNGC	4 cut(s)	212, 746, 749, 949
BlsI	GCNGC	4 cut(s)	213, 747, 750, 950
Bme1390I	CCNGG	2 cut(s)	382, 740
Bme18I	GGWCC	1 cut(s)	736
BmgT120I	GGNCC	1 cut(s)	736
BmiI	GGNNCC	2 cut(s)	360, 425
BmrFI	CCNGG	2 cut(s)	382, 740
BmsI	GCATC	2 cut(s)	847, 877
BpiI	GAAGAC	1 cut(s)	656
BsaJI	CCNNGG	5 cut(s)	234, 459, 543, 654, 732
Bsc4I	CCNNNNNNNGG	3 cut(s)	177, 178, 674
Bse1I	ACTGG	1 cut(s)	613
BseBI	CCWGG	2 cut(s)	382, 740
BseDI	CCNNGG	5 cut(s)	234, 459, 543, 654, 732
BseGI	GGATG	4 cut(s)	244, 336, 831, 886
BseLI	CCNNNNNNNGG	3 cut(s)	177, 178, 674
BseNI	ACTGG	1 cut(s)	613
BseRI	GAGGAG	5 cut(s)	239, 416, 581, 638, 701
BseXI	GCAGC	4 cut(s)	198, 732, 735, 960
BshFI	GGCC	1 cut(s)	318
BsiSI	CCGG	1 cut(s)	221
BslI	CCNNNNNNNGG	3 cut(s)	177, 178, 674
BsmAI	GTCTC	1 cut(s)	752
BsmI	GAATGC	1 cut(s)	28
BsnI	GGCC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	361
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	6, 466, 634, 678
Bsp19I	CCATGG	2 cut(s)	459, 654
BspANI	GGCC	1 cut(s)	318
BspLI	GGNNCC	2 cut(s)	360, 425
BspPI	GGATC	4 cut(s)	14, 474, 642, 686
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	1 cut(s)	613
BssECI	CCNNGG	5 cut(s)	234, 459, 543, 654, 732
BssMI	GATC	4 cut(s)	6, 466, 634, 678
BssT1I	CCWWGG	4 cut(s)	234, 459, 654, 732
Bst2UI	CCWGG	2 cut(s)	382, 740
Bst6I	CTCTTC	3 cut(s)	84, 543, 888
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	6 cut(s)	218, 320, 643, 862, 866, 870
BstDSI	CCRYGG	2 cut(s)	459, 654
BstF5I	GGATG	4 cut(s)	244, 336, 831, 886
BstHHI	GCGC	1 cut(s)	216
BstKTI	GATC	4 cut(s)	9, 469, 637, 681
BstMAI	GTCTC	1 cut(s)	752
BstMBI	GATC	4 cut(s)	6, 466, 634, 678
BstMWI	GCNNNNNNNGC	1 cut(s)	217
BstNI	CCWGG	2 cut(s)	382, 740
BstNSI	RCATGY	1 cut(s)	868
BstSCI	CCNGG	2 cut(s)	380, 738
BstV1I	GCAGC	4 cut(s)	198, 732, 735, 960
BstV2I	GAAGAC	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	739
BsuRI	GGCC	1 cut(s)	318
BtgI	CCRYGG	2 cut(s)	459, 654
BtsCI	GGATG	4 cut(s)	244, 336, 831, 886
BtsI	GCAGTG	2 cut(s)	300, 416
BtsIMutI	CAGTG	2 cut(s)	300, 416
Cac8I	GCNNGC	6 cut(s)	218, 320, 643, 862, 866, 870
CfoI	GCGC	1 cut(s)	216
Cfr13I	GGNCC	1 cut(s)	736
CseI	GACGC	1 cut(s)	798
CsiI	ACCWGGT	1 cut(s)	738
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	5 cut(s)	460, 470, 655, 682, 865
CviQI	GTAC	1 cut(s)	256
DpnI	GATC	4 cut(s)	8, 468, 636, 680
DpnII	GATC	4 cut(s)	6, 466, 634, 678
Eam1104I	CTCTTC	3 cut(s)	84, 543, 888
EarI	CTCTTC	3 cut(s)	84, 543, 888
Eco130I	CCWWGG	4 cut(s)	234, 459, 654, 732
Eco24I	GRGCYC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	736
Eco57I	CTGAAG	3 cut(s)	545, 726, 912
EcoO109I	RGGNCCY	1 cut(s)	736
EcoRI	GAATTC	3 cut(s)	35, 326, 816
EcoRII	CCWGG	2 cut(s)	380, 738
EcoT14I	CCWWGG	4 cut(s)	234, 459, 654, 732
EcoT38I	GRGCYC	1 cut(s)	361
ErhI	CCWWGG	4 cut(s)	234, 459, 654, 732
FaeI	CATG	5 cut(s)	463, 473, 658, 685, 868
FatI	CATG	5 cut(s)	459, 469, 654, 681, 864
Fnu4HI	GCNGC	4 cut(s)	212, 746, 749, 949
FokI	GGATG	4 cut(s)	251, 323, 838, 893
FriOI	GRGCYC	1 cut(s)	361
Fsp4HI	GCNGC	4 cut(s)	212, 746, 749, 949
FspBI	CTAG	2 cut(s)	102, 323
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	1 cut(s)	215
GluI	GCNGC	4 cut(s)	212, 746, 749, 949
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	1 cut(s)	221
HgaI	GACGC	1 cut(s)	798
HhaI	GCGC	1 cut(s)	216
Hin1II	CATG	5 cut(s)	463, 473, 658, 685, 868
Hin6I	GCGC	1 cut(s)	214
HinP1I	GCGC	1 cut(s)	214
HincII	GTYRAC	2 cut(s)	115, 771
HindII	GTYRAC	2 cut(s)	115, 771
HindIII	AAGCTT	1 cut(s)	833
HinfI	GANTC	5 cut(s)	134, 377, 445, 587, 725
HpaII	CCGG	1 cut(s)	221
HphI	GGTGA	3 cut(s)	406, 616, 623
Hpy166II	GTNNAC	3 cut(s)	115, 729, 771
Hpy188I	TCNGA	3 cut(s)	34, 139, 525
Hpy188III	TCNNGA	2 cut(s)	433, 813
Hpy8I	GTNNAC	3 cut(s)	115, 729, 771
Hpy99I	CGWCG	2 cut(s)	725, 814
HpyAV	CCTTC	7 cut(s)	79, 89, 308, 385, 433, 512, 625
HpyCH4V	TGCA	3 cut(s)	293, 473, 948
HpyF10VI	GCNNNNNNNGC	1 cut(s)	217
Hsp92II	CATG	5 cut(s)	463, 473, 658, 685, 868
HspAI	GCGC	1 cut(s)	214
Kzo9I	GATC	4 cut(s)	6, 466, 634, 678
LmnI	GCTCC	3 cut(s)	98, 364, 429
Lsp1109I	GCAGC	4 cut(s)	198, 732, 735, 960
LweI	GCATC	2 cut(s)	847, 877
MabI	ACCWGGT	1 cut(s)	738
MaeI	CTAG	2 cut(s)	102, 323
MaeIII	GTNAC	1 cut(s)	604
MalI	GATC	4 cut(s)	8, 468, 636, 680
MboI	GATC	4 cut(s)	6, 466, 634, 678
MhlI	GDGCHC	1 cut(s)	361
MluCI	AATT	4 cut(s)	35, 326, 579, 816
MlyI	GAGTC	2 cut(s)	386, 734
MseI	TTAA	2 cut(s)	159, 663
MspI	CCGG	1 cut(s)	221
MspR9I	CCNGG	2 cut(s)	382, 740
Mva1269I	GAATGC	1 cut(s)	28
MvaI	CCWGG	2 cut(s)	382, 740
MwoI	GCNNNNNNNGC	1 cut(s)	217
NcoI	CCATGG	2 cut(s)	459, 654
NdeII	GATC	4 cut(s)	6, 466, 634, 678
NlaIII	CATG	5 cut(s)	463, 473, 658, 685, 868
NlaIV	GGNNCC	2 cut(s)	360, 425
NmuCI	GTSAC	1 cut(s)	604
NsbI	TGCGCA	1 cut(s)	215
NspI	RCATGY	1 cut(s)	868
PaeI	GCATGC	1 cut(s)	868
PctI	GAATGC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	134, 445, 587
PfoI	TCCNGGA	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	213, 747, 750, 950
PleI	GAGTC	2 cut(s)	385, 733
PpsI	GAGTC	2 cut(s)	385, 733
PpuMI	RGGWCCY	1 cut(s)	736
Psp5II	RGGWCCY	1 cut(s)	736
Psp6I	CCWGG	2 cut(s)	380, 738
PspGI	CCWGG	2 cut(s)	380, 738
PspN4I	GGNNCC	2 cut(s)	360, 425
PspPI	GGNCC	1 cut(s)	736
PspPPI	RGGWCCY	1 cut(s)	736
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	2 cut(s)	159, 663
SatI	GCNGC	4 cut(s)	212, 746, 749, 949
Sau3AI	GATC	4 cut(s)	6, 466, 634, 678
Sau96I	GGNCC	1 cut(s)	736
SchI	GAGTC	2 cut(s)	386, 734
ScrFI	CCNGG	2 cut(s)	382, 740
SduI	GDGCHC	1 cut(s)	361
SexAI	ACCWGGT	1 cut(s)	738
SfaNI	GCATC	2 cut(s)	847, 877
SinI	GGWCC	1 cut(s)	736
SphI	GCATGC	1 cut(s)	868
Sse9I	AATT	4 cut(s)	35, 326, 579, 816
SspMI	CTAG	2 cut(s)	102, 323
StyD4I	CCNGG	2 cut(s)	380, 738
StyI	CCWWGG	4 cut(s)	234, 459, 654, 732
TaqI	TCGA	4 cut(s)	72, 366, 531, 812
TaqII	GACCGA	1 cut(s)	557
TasI	AATT	4 cut(s)	35, 326, 579, 816
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	3 cut(s)	134, 445, 587
Tru1I	TTAA	2 cut(s)	159, 663
Tru9I	TTAA	2 cut(s)	159, 663
TscAI	CASTG	2 cut(s)	300, 416
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	4 cut(s)	211, 745, 748, 948
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	1 cut(s)	28
TspRI	CASTG	2 cut(s)	300, 416
VpaK11BI	GGWCC	1 cut(s)	736
XapI	RAATTY	3 cut(s)	35, 326, 816
XceI	RCATGY	1 cut(s)	868
XcmI	CCANNNNNNNNNTGG	1 cut(s)	736
XspI	CTAG	2 cut(s)	102, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.