Heat shock protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 2 cut(s) | 617, 1043 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 1712 |
| Acc16I | TGCGCA | 1 cut(s) | 1031 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 891 |
| AccBSI | CCGCTC | 2 cut(s) | 1120, 1946 |
| AccI | GTMKAC | 3 cut(s) | 1235, 1716, 2067 |
| AccII | CGCG | 2 cut(s) | 117, 1132 |
| AccIII | TCCGGA | 1 cut(s) | 213 |
| AciI | CCGC | 4 cut(s) | 50, 115, 1118, 1944 |
| AclWI | GGATC | 4 cut(s) | 148, 170, 224, 1970 |
| AcsI | RAATTY | 1 cut(s) | 1241 |
| AcuI | CTGAAG | 1 cut(s) | 1565 |
| AdeI | CACNNNGTG | 1 cut(s) | 1727 |
| AfaI | GTAC | 3 cut(s) | 786, 1076, 1328 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 891, 1273, 1300 |
| AflII | CTTAAG | 1 cut(s) | 1466 |
| AflIII | ACRYGT | 1 cut(s) | 1818 |
| AgsI | TTSAA | 4 cut(s) | 8, 946, 1207, 1534 |
| AhlI | ACTAGT | 1 cut(s) | 2053 |
| AjiI | CACGTC | 1 cut(s) | 355 |
| AjnI | CCWGG | 1 cut(s) | 45 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1256, 1288 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 195, 227 |
| Alw21I | GWGCWC | 2 cut(s) | 123, 976 |
| Alw26I | GTCTC | 6 cut(s) | 26, 198, 468, 1883, 1934, 2027 |
| AlwI | GGATC | 4 cut(s) | 148, 170, 224, 1970 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 67 |
| Ama87I | CYCGRG | 3 cut(s) | 188, 938, 1196 |
| Aor13HI | TCCGGA | 1 cut(s) | 213 |
| AoxI | GGCC | 3 cut(s) | 342, 931, 1393 |
| ApeKI | GCWGC | 3 cut(s) | 1141, 1927, 1930 |
| ApoI | RAATTY | 1 cut(s) | 1241 |
| AseI | ATTAAT | 1 cut(s) | 1845 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 917, 1578 |
| AspLEI | GCGC | 2 cut(s) | 1032, 1687 |
| AspS9I | GGNCC | 4 cut(s) | 309, 315, 525, 1393 |
| AsuC2I | CCSGG | 2 cut(s) | 313, 346 |
| AsuII | TTCGAA | 1 cut(s) | 848 |
| AvaI | CYCGRG | 3 cut(s) | 188, 938, 1196 |
| AvaII | GGWCC | 3 cut(s) | 309, 315, 525 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 776, 809 |
| BanII | GRGCYC | 1 cut(s) | 123 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1391, 1423 |
| BbsI | GAAGAC | 5 cut(s) | 558, 653, 903, 1664, 1838 |
| Bbv12I | GWGCWC | 2 cut(s) | 123, 976 |
| BbvCI | CCTCAGC | 2 cut(s) | 827, 1874 |
| BbvI | GCAGC | 3 cut(s) | 1128, 1914, 1917 |
| BccI | CCATC | 6 cut(s) | 10, 251, 769, 1538, 2086, 2104 |
| BciT130I | CCWGG | 1 cut(s) | 47 |
| BciVI | GTATCC | 1 cut(s) | 1289 |
| BclI | TGATCA | 2 cut(s) | 75, 445 |
| BcnI | CCSGG | 2 cut(s) | 313, 346 |
| BcoDI | GTCTC | 6 cut(s) | 26, 198, 468, 1883, 1934, 2027 |
| BcuI | ACTAGT | 1 cut(s) | 2053 |
| BfaI | CTAG | 3 cut(s) | 492, 1824, 2054 |
| BfmI | CTRYAG | 2 cut(s) | 91, 1860 |
| BfrI | CTTAAG | 1 cut(s) | 1466 |
| BfuI | GTATCC | 1 cut(s) | 1289 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 823 |
| BisI | GCNGC | 4 cut(s) | 1118, 1142, 1928, 1931 |
| BlsI | GCNGC | 4 cut(s) | 1119, 1143, 1929, 1932 |
| Bme1390I | CCNGG | 3 cut(s) | 47, 313, 346 |
| Bme18I | GGWCC | 3 cut(s) | 309, 315, 525 |
| BmeT110I | CYCGRG | 3 cut(s) | 188, 938, 1196 |
| BmgBI | CACGTC | 1 cut(s) | 355 |
| BmgT120I | GGNCC | 4 cut(s) | 309, 315, 525, 1393 |
| BmiI | GGNNCC | 2 cut(s) | 316, 526 |
| BmrFI | CCNGG | 3 cut(s) | 47, 313, 346 |
| BmrI | ACTGGG | 1 cut(s) | 2027 |
| BmsI | GCATC | 6 cut(s) | 130, 219, 673, 1056, 1128, 1998 |
| BmuI | ACTGGG | 1 cut(s) | 2027 |
| BpiI | GAAGAC | 5 cut(s) | 558, 653, 903, 1664, 1838 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 848, 880, 1241, 1273 |
| BpmI | CTGGAG | 2 cut(s) | 1478, 1761 |
| Bpu10I | CCTNAGC | 4 cut(s) | 827, 1322, 1785, 1874 |
| Bpu14I | TTCGAA | 1 cut(s) | 848 |
| BpuEI | CTTGAG | 5 cut(s) | 530, 569, 1145, 1253, 1607 |
| BpuMI | CCSGG | 2 cut(s) | 313, 346 |
| BsaBI | GATNNNNATC | 1 cut(s) | 444 |
| BsaI | GGTCTC | 3 cut(s) | 26, 1934, 2027 |
| BsaJI | CCNNGG | 5 cut(s) | 318, 345, 528, 1078, 1662 |
| BsaWI | WCCGGW | 1 cut(s) | 213 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 891, 1273, 1300 |
| Bse118I | RCCGGY | 1 cut(s) | 254 |
| Bse1I | ACTGG | 3 cut(s) | 1423, 1744, 2022 |
| Bse3DI | GCAATG | 1 cut(s) | 136 |
| Bse8I | GATNNNNATC | 1 cut(s) | 444 |
| BseAI | TCCGGA | 1 cut(s) | 213 |
| BseBI | CCWGG | 1 cut(s) | 47 |
| BseDI | CCNNGG | 5 cut(s) | 318, 345, 528, 1078, 1662 |
| BseGI | GGATG | 6 cut(s) | 210, 219, 502, 1389, 1597, 2013 |
| BseJI | GATNNNNATC | 1 cut(s) | 444 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 891, 1273, 1300 |
| BseMI | GCAATG | 1 cut(s) | 136 |
| BseMII | CTCAG | 8 cut(s) | 59, 399, 479, 818, 1336, 1799, 1865, 2038 |
| BseNI | ACTGG | 3 cut(s) | 1423, 1744, 2022 |
| BseRI | GAGGAG | 9 cut(s) | 722, 854, 869, 1073, 1244, 1619, 1637, 1883, 2099 |
| BseXI | GCAGC | 3 cut(s) | 1128, 1914, 1917 |
| BseYI | CCCAGC | 2 cut(s) | 179, 1991 |
| Bsh1236I | CGCG | 2 cut(s) | 117, 1132 |
| BshFI | GGCC | 3 cut(s) | 344, 933, 1395 |
| BsiHKAI | GWGCWC | 2 cut(s) | 123, 976 |
| BsiHKCI | CYCGRG | 3 cut(s) | 188, 938, 1196 |
| BsiSI | CCGG | 6 cut(s) | 214, 255, 312, 345, 836, 1070 |
| BslFI | GGGAC | 4 cut(s) | 310, 328, 538, 1811 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 891, 1273, 1300 |
| BsmAI | GTCTC | 6 cut(s) | 26, 198, 468, 1883, 1934, 2027 |
| BsmFI | GGGAC | 4 cut(s) | 310, 328, 538, 1811 |
| BsmI | GAATGC | 2 cut(s) | 41, 604 |
| BsnI | GGCC | 3 cut(s) | 344, 933, 1395 |
| Bso31I | GGTCTC | 3 cut(s) | 26, 1934, 2027 |
| BsoBI | CYCGRG | 3 cut(s) | 188, 938, 1196 |
| Bsp119I | TTCGAA | 1 cut(s) | 848 |
| Bsp1286I | GDGCHC | 2 cut(s) | 123, 976 |
| Bsp13I | TCCGGA | 1 cut(s) | 213 |
| BspACI | CCGC | 4 cut(s) | 50, 115, 1118, 1944 |
| BspANI | GGCC | 3 cut(s) | 344, 933, 1395 |
| BspCNI | CTCAG | 8 cut(s) | 60, 400, 478, 819, 1335, 1798, 1866, 2037 |
| BspEI | TCCGGA | 1 cut(s) | 213 |
| BspFNI | CGCG | 2 cut(s) | 117, 1132 |
| BspLI | GGNNCC | 2 cut(s) | 316, 526 |
| BspPI | GGATC | 4 cut(s) | 148, 170, 224, 1970 |
| BspT104I | TTCGAA | 1 cut(s) | 848 |
| BspTI | CTTAAG | 1 cut(s) | 1466 |
| BspTNI | GGTCTC | 3 cut(s) | 26, 1934, 2027 |
| BsrBI | CCGCTC | 2 cut(s) | 1120, 1946 |
| BsrDI | GCAATG | 1 cut(s) | 136 |
| BsrFI | RCCGGY | 1 cut(s) | 254 |
| BsrI | ACTGG | 3 cut(s) | 1423, 1744, 2022 |
| BssAI | RCCGGY | 1 cut(s) | 254 |
| BssECI | CCNNGG | 5 cut(s) | 318, 345, 528, 1078, 1662 |
| BssNAI | GTATAC | 1 cut(s) | 1236 |
| BssT1I | CCWWGG | 4 cut(s) | 318, 528, 1078, 1662 |
| Bst1107I | GTATAC | 1 cut(s) | 1236 |
| Bst2UI | CCWGG | 1 cut(s) | 47 |
| Bst4CI | ACNGT | 4 cut(s) | 487, 652, 1452, 1530 |
| Bst6I | CTCTTC | 3 cut(s) | 962, 1596, 1874 |
| BstAFI | CTTAAG | 1 cut(s) | 1466 |
| BstBI | TTCGAA | 1 cut(s) | 848 |
| BstC8I | GCNNGC | 6 cut(s) | 119, 185, 342, 935, 1215, 1311 |
| BstDEI | CTNAG | 9 cut(s) | 68, 408, 429, 465, 827, 1322, 1785, 1874, 2024 |
| BstF5I | GGATG | 6 cut(s) | 210, 219, 502, 1389, 1597, 2013 |
| BstFNI | CGCG | 2 cut(s) | 117, 1132 |
| BstHHI | GCGC | 2 cut(s) | 1032, 1687 |
| BstMAI | GTCTC | 6 cut(s) | 26, 198, 468, 1883, 1934, 2027 |
| BstNI | CCWGG | 1 cut(s) | 47 |
| BstNSI | RCATGY | 2 cut(s) | 1822, 2074 |
| BstSCI | CCNGG | 3 cut(s) | 45, 311, 344 |
| BstSFI | CTRYAG | 2 cut(s) | 91, 1860 |
| BstUI | CGCG | 2 cut(s) | 117, 1132 |
| BstV1I | GCAGC | 3 cut(s) | 1128, 1914, 1917 |
| BstV2I | GAAGAC | 5 cut(s) | 558, 653, 903, 1664, 1838 |
| BstX2I | RGATCY | 1 cut(s) | 153 |
| BstYI | RGATCY | 1 cut(s) | 153 |
| BstZ17I | GTATAC | 1 cut(s) | 1236 |
| BsuI | GTATCC | 1 cut(s) | 1289 |
| BsuRI | GGCC | 3 cut(s) | 344, 933, 1395 |
| BtrI | CACGTC | 1 cut(s) | 355 |
| BtsCI | GGATG | 6 cut(s) | 210, 219, 502, 1389, 1597, 2013 |
| BtsIMutI | CAGTG | 1 cut(s) | 1344 |
| Cac8I | GCNNGC | 6 cut(s) | 119, 185, 342, 935, 1215, 1311 |
| CaiI | CAGNNNCTG | 1 cut(s) | 67 |
| CfoI | GCGC | 2 cut(s) | 1032, 1687 |
| Cfr10I | RCCGGY | 1 cut(s) | 254 |
| Cfr13I | GGNCC | 4 cut(s) | 309, 315, 525, 1393 |
| Csp6I | GTAC | 3 cut(s) | 785, 1075, 1327 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 437, 472 |
| CviAII | CATG | 8 cut(s) | 265, 361, 788, 1283, 1765, 1807, 1819, 2071 |
| CviQI | GTAC | 3 cut(s) | 785, 1075, 1327 |
| DdeI | CTNAG | 9 cut(s) | 68, 408, 429, 465, 827, 1322, 1785, 1874, 2024 |
| DraIII | CACNNNGTG | 1 cut(s) | 1727 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 1712 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 1712 |
| Eam1104I | CTCTTC | 3 cut(s) | 962, 1596, 1874 |
| EarI | CTCTTC | 3 cut(s) | 962, 1596, 1874 |
| EciI | GGCGGA | 1 cut(s) | 65 |
| Ecl136II | GAGCTC | 1 cut(s) | 121 |
| Eco130I | CCWWGG | 4 cut(s) | 318, 528, 1078, 1662 |
| Eco24I | GRGCYC | 1 cut(s) | 123 |
| Eco31I | GGTCTC | 3 cut(s) | 26, 1934, 2027 |
| Eco47I | GGWCC | 3 cut(s) | 309, 315, 525 |
| Eco53kI | GAGCTC | 1 cut(s) | 121 |
| Eco57I | CTGAAG | 1 cut(s) | 1565 |
| Eco88I | CYCGRG | 3 cut(s) | 188, 938, 1196 |
| EcoICRI | GAGCTC | 1 cut(s) | 121 |
| EcoRII | CCWGG | 1 cut(s) | 45 |
| EcoT14I | CCWWGG | 4 cut(s) | 318, 528, 1078, 1662 |
| EcoT22I | ATGCAT | 2 cut(s) | 145, 212 |
| EcoT38I | GRGCYC | 1 cut(s) | 123 |
| ErhI | CCWWGG | 4 cut(s) | 318, 528, 1078, 1662 |
| FaeI | CATG | 8 cut(s) | 268, 364, 791, 1286, 1768, 1810, 1822, 2074 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 888, 920, 961, 993, 1563, 1595 |
| FaqI | GGGAC | 4 cut(s) | 310, 328, 538, 1811 |
| FatI | CATG | 8 cut(s) | 264, 360, 787, 1282, 1764, 1806, 1818, 2070 |
| FbaI | TGATCA | 2 cut(s) | 75, 445 |
| FblI | GTMKAC | 3 cut(s) | 1235, 1716, 2067 |
| Fnu4HI | GCNGC | 4 cut(s) | 1118, 1142, 1928, 1931 |
| FokI | GGATG | 6 cut(s) | 197, 206, 509, 1396, 1604, 2020 |
| FriOI | GRGCYC | 1 cut(s) | 123 |
| Fsp4HI | GCNGC | 4 cut(s) | 1118, 1142, 1928, 1931 |
| FspBI | CTAG | 3 cut(s) | 492, 1824, 2054 |
| FspI | TGCGCA | 1 cut(s) | 1031 |
| GlaI | GCGC | 2 cut(s) | 1031, 1686 |
| GluI | GCNGC | 4 cut(s) | 1118, 1142, 1928, 1931 |
| GsaI | CCCAGC | 2 cut(s) | 183, 1995 |
| GsuI | CTGGAG | 2 cut(s) | 1478, 1761 |
| HaeIII | GGCC | 3 cut(s) | 344, 933, 1395 |
| HapII | CCGG | 6 cut(s) | 214, 255, 312, 345, 836, 1070 |
| HhaI | GCGC | 2 cut(s) | 1032, 1687 |
| Hin1II | CATG | 8 cut(s) | 268, 364, 791, 1286, 1768, 1810, 1822, 2074 |
| Hin6I | GCGC | 2 cut(s) | 1030, 1685 |
| HinP1I | GCGC | 2 cut(s) | 1030, 1685 |
| HincII | GTYRAC | 3 cut(s) | 1717, 2068, 2122 |
| HindII | GTYRAC | 3 cut(s) | 1717, 2068, 2122 |
| HindIII | AAGCTT | 2 cut(s) | 1019, 1553 |
| HpaII | CCGG | 6 cut(s) | 214, 255, 312, 345, 836, 1070 |
| Hpy166II | GTNNAC | 6 cut(s) | 286, 1236, 1717, 1755, 2068, 2122 |
| Hpy188I | TCNGA | 8 cut(s) | 69, 139, 158, 610, 1108, 1600, 1705, 2083 |
| Hpy188III | TCNNGA | 8 cut(s) | 163, 214, 1198, 1258, 1441, 1457, 1850, 1888 |
| Hpy8I | GTNNAC | 6 cut(s) | 286, 1236, 1717, 1755, 2068, 2122 |
| HpyCH4III | ACNGT | 4 cut(s) | 487, 652, 1452, 1530 |
| HpyCH4IV | ACGT | 2 cut(s) | 27, 354 |
| HpyCH4V | TGCA | 7 cut(s) | 143, 210, 340, 686, 1144, 1217, 1653 |
| HpyF3I | CTNAG | 9 cut(s) | 68, 408, 429, 465, 827, 1322, 1785, 1874, 2024 |
| HpySE526I | ACGT | 2 cut(s) | 27, 354 |
| Hsp92II | CATG | 8 cut(s) | 268, 364, 791, 1286, 1768, 1810, 1822, 2074 |
| HspAI | GCGC | 2 cut(s) | 1030, 1685 |
| Kpn2I | TCCGGA | 1 cut(s) | 213 |
| Ksp22I | TGATCA | 2 cut(s) | 75, 445 |
| LmnI | GCTCC | 5 cut(s) | 589, 796, 1060, 1811, 1870 |
| Lsp1109I | GCAGC | 3 cut(s) | 1128, 1914, 1917 |
| LweI | GCATC | 6 cut(s) | 130, 219, 673, 1056, 1128, 1998 |
| MaeI | CTAG | 3 cut(s) | 492, 1824, 2054 |
| MaeII | ACGT | 2 cut(s) | 27, 354 |
| MaeIII | GTNAC | 5 cut(s) | 424, 487, 1375, 1564, 1735 |
| MbiI | CCGCTC | 2 cut(s) | 1120, 1946 |
| MfeI | CAATTG | 1 cut(s) | 1051 |
| MflI | RGATCY | 1 cut(s) | 153 |
| MhlI | GDGCHC | 2 cut(s) | 123, 976 |
| MluCI | AATT | 6 cut(s) | 9, 278, 289, 1051, 1241, 1773 |
| MlyI | GAGTC | 4 cut(s) | 200, 470, 1604, 1712 |
| MmeI | TCCRAC | 2 cut(s) | 1504, 1578 |
| Mph1103I | ATGCAT | 2 cut(s) | 145, 212 |
| MroI | TCCGGA | 1 cut(s) | 213 |
| MroXI | GAANNNNTTC | 2 cut(s) | 917, 1578 |
| MseI | TTAA | 5 cut(s) | 501, 804, 1365, 1467, 1845 |
| MslI | CAYNNNNRTG | 4 cut(s) | 263, 422, 438, 1382 |
| MspCI | CTTAAG | 1 cut(s) | 1466 |
| MspI | CCGG | 6 cut(s) | 214, 255, 312, 345, 836, 1070 |
| MspR9I | CCNGG | 3 cut(s) | 47, 313, 346 |
| MunI | CAATTG | 1 cut(s) | 1051 |
| Mva1269I | GAATGC | 2 cut(s) | 41, 604 |
| MvaI | CCWGG | 1 cut(s) | 47 |
| MvnI | CGCG | 2 cut(s) | 117, 1132 |
| NciI | CCSGG | 2 cut(s) | 313, 346 |
| NlaIII | CATG | 8 cut(s) | 268, 364, 791, 1286, 1768, 1810, 1822, 2074 |
| NlaIV | GGNNCC | 2 cut(s) | 316, 526 |
| NmuCI | GTSAC | 3 cut(s) | 424, 1375, 1735 |
| NsbI | TGCGCA | 1 cut(s) | 1031 |
| NsiI | ATGCAT | 2 cut(s) | 145, 212 |
| NspI | RCATGY | 2 cut(s) | 1822, 2074 |
| NspV | TTCGAA | 1 cut(s) | 848 |
| PaeR7I | CTCGAG | 3 cut(s) | 188, 938, 1196 |
| PciI | ACATGT | 1 cut(s) | 1818 |
| PctI | GAATGC | 2 cut(s) | 41, 604 |
| PdmI | GAANNNNTTC | 2 cut(s) | 917, 1578 |
| PfeI | GAWTC | 6 cut(s) | 159, 384, 1103, 1156, 1177, 1999 |
| PflFI | GACNNNGTC | 1 cut(s) | 1373 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 891 |
| PfoI | TCCNGGA | 1 cut(s) | 311 |
| PkrI | GCNGC | 4 cut(s) | 1119, 1143, 1929, 1932 |
| PleI | GAGTC | 4 cut(s) | 199, 469, 1603, 1712 |
| PpsI | GAGTC | 4 cut(s) | 199, 469, 1603, 1712 |
| PscI | ACATGT | 1 cut(s) | 1818 |
| PshBI | ATTAAT | 1 cut(s) | 1845 |
| PsiI | TTATAA | 2 cut(s) | 617, 1043 |
| Psp124BI | GAGCTC | 1 cut(s) | 123 |
| Psp6I | CCWGG | 1 cut(s) | 45 |
| PspFI | CCCAGC | 2 cut(s) | 179, 1991 |
| PspGI | CCWGG | 1 cut(s) | 45 |
| PspN4I | GGNNCC | 2 cut(s) | 316, 526 |
| PspPI | GGNCC | 4 cut(s) | 309, 315, 525, 1393 |
| PspXI | VCTCGAGB | 2 cut(s) | 188, 938 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1394, 1426 |
| PstNI | CAGNNNCTG | 1 cut(s) | 67 |
| PsuI | RGATCY | 1 cut(s) | 153 |
| PsyI | GACNNNGTC | 1 cut(s) | 1373 |
| RsaI | GTAC | 3 cut(s) | 786, 1076, 1328 |
| RsaNI | GTAC | 3 cut(s) | 785, 1075, 1327 |
| RseI | CAYNNNNRTG | 4 cut(s) | 263, 422, 438, 1382 |
| SacI | GAGCTC | 1 cut(s) | 123 |
| SalI | GTCGAC | 2 cut(s) | 1715, 2066 |
| SaqAI | TTAA | 5 cut(s) | 501, 804, 1365, 1467, 1845 |
| SatI | GCNGC | 4 cut(s) | 1118, 1142, 1928, 1931 |
| Sau96I | GGNCC | 4 cut(s) | 309, 315, 525, 1393 |
| SchI | GAGTC | 4 cut(s) | 200, 470, 1604, 1712 |
| ScrFI | CCNGG | 3 cut(s) | 47, 313, 346 |
| SduI | GDGCHC | 2 cut(s) | 123, 976 |
| SfaNI | GCATC | 6 cut(s) | 130, 219, 673, 1056, 1128, 1998 |
| SfcI | CTRYAG | 2 cut(s) | 91, 1860 |
| Sfr274I | CTCGAG | 3 cut(s) | 188, 938, 1196 |
| SfuI | TTCGAA | 1 cut(s) | 848 |
| SinI | GGWCC | 3 cut(s) | 309, 315, 525 |
| SlaI | CTCGAG | 3 cut(s) | 188, 938, 1196 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 263, 422, 438, 1382 |
| SmlI | CTYRAG | 9 cut(s) | 188, 545, 584, 938, 1160, 1196, 1268, 1466, 1586 |
| SmoI | CTYRAG | 9 cut(s) | 188, 545, 584, 938, 1160, 1196, 1268, 1466, 1586 |
| SpeI | ACTAGT | 1 cut(s) | 2053 |
| Sse9I | AATT | 6 cut(s) | 9, 278, 289, 1051, 1241, 1773 |
| SsiI | CCGC | 4 cut(s) | 50, 115, 1118, 1944 |
| SspMI | CTAG | 3 cut(s) | 492, 1824, 2054 |
| SstI | GAGCTC | 1 cut(s) | 123 |
| StyD4I | CCNGG | 3 cut(s) | 45, 311, 344 |
| StyI | CCWWGG | 4 cut(s) | 318, 528, 1078, 1662 |
| TaaI | ACNGT | 4 cut(s) | 487, 652, 1452, 1530 |
| TaiI | ACGT | 2 cut(s) | 30, 357 |
| TasI | AATT | 6 cut(s) | 9, 278, 289, 1051, 1241, 1773 |
| TauI | GCSGC | 1 cut(s) | 1120 |
| TfiI | GAWTC | 6 cut(s) | 159, 384, 1103, 1156, 1177, 1999 |
| Tru1I | TTAA | 5 cut(s) | 501, 804, 1365, 1467, 1845 |
| Tru9I | TTAA | 5 cut(s) | 501, 804, 1365, 1467, 1845 |
| TscAI | CASTG | 1 cut(s) | 1351 |
| TseFI | GTSAC | 3 cut(s) | 424, 1375, 1735 |
| TseI | GCWGC | 3 cut(s) | 1141, 1927, 1930 |
| Tsp45I | GTSAC | 3 cut(s) | 424, 1375, 1735 |
| TspDTI | ATGAA | 4 cut(s) | 690, 1400, 1793, 2049 |
| TspRI | CASTG | 1 cut(s) | 1351 |
| Tth111I | GACNNNGTC | 1 cut(s) | 1373 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 891 |
| Vha464I | CTTAAG | 1 cut(s) | 1466 |
| VpaK11BI | GGWCC | 3 cut(s) | 309, 315, 525 |
| VspI | ATTAAT | 1 cut(s) | 1845 |
| XapI | RAATTY | 1 cut(s) | 1241 |
| XceI | RCATGY | 2 cut(s) | 1822, 2074 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 277, 325 |
| XhoI | CTCGAG | 3 cut(s) | 188, 938, 1196 |
| XmiI | GTMKAC | 3 cut(s) | 1235, 1716, 2067 |
| XmnI | GAANNNNTTC | 2 cut(s) | 917, 1578 |
| XspI | CTAG | 3 cut(s) | 492, 1824, 2054 |
| Zsp2I | ATGCAT | 2 cut(s) | 145, 212 |