Rh1DG327400

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
Physical Location & Seq
Forward (+)
55248091 .. 55253272
5182 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG327400.1

Sequence Viewer

Length: 234 bp
ATGGCTGATGTTTACATTGGTGATGCTGAGACATTCGCATTCCACGTAGAGATCAACCAACTTGTTAGCTTGATCATCAATACCTTTTACAGCAACAAAGAAATATTTCTAGGCCAACTTATCAGCAATTGCAATGATTTATCTGCTGGACAATTAGCTCGACTACAACGCACTGTAGTTACAAATGATGAACGAGATCGAGTCTCATTTAGGGATATCTATATAGATTTTTAA

Protein Analysis

77

Amino Acids

8.85

Weight (kDa)

4.46

Isoelectric Point (pI)

21.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AluBI AGCT 2 cut(s) 69, 158
AluI AGCT 2 cut(s) 69, 158
Alw26I GTCTC 2 cut(s) 23, 208
AoxI GGCC 1 cut(s) 112
Asp700I GAANNNNTTC 1 cut(s) 105
AsuHPI GGTGA 1 cut(s) 32
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 23, 208
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 1 cut(s) 174
BmsI GCATC 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 139
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 1 cut(s) 18
BshFI GGCC 1 cut(s) 114
BsmAI GTCTC 2 cut(s) 23, 208
BsmI GAATGC 1 cut(s) 38
BsnI GGCC 1 cut(s) 114
Bsp143I GATC 3 cut(s) 51, 72, 196
BspANI GGCC 1 cut(s) 114
BspCNI CTCAG 1 cut(s) 19
BsrDI GCAATG 1 cut(s) 139
BssMI GATC 3 cut(s) 51, 72, 196
Bst4CI ACNGT 1 cut(s) 175
BstBAI YACGTR 1 cut(s) 46
BstDEI CTNAG 1 cut(s) 27
BstKTI GATC 3 cut(s) 54, 75, 199
BstMAI GTCTC 2 cut(s) 23, 208
BstMBI GATC 3 cut(s) 51, 72, 196
BstSFI CTRYAG 1 cut(s) 174
BsuRI GGCC 1 cut(s) 114
BtsIMutI CAGTG 1 cut(s) 171
CviJI RGCY 4 cut(s) 5, 69, 114, 158
CviKI_1 RGCY 4 cut(s) 5, 69, 114, 158
DdeI CTNAG 1 cut(s) 27
DpnI GATC 3 cut(s) 53, 74, 198
DpnII GATC 3 cut(s) 51, 72, 196
Eco32I GATATC 1 cut(s) 217
EcoRV GATATC 1 cut(s) 217
FaiI YATR 2 cut(s) 222, 224
FbaI TGATCA 1 cut(s) 72
FspBI CTAG 1 cut(s) 110
FspEI CC 9 cut(s) 3, 56, 71, 96, 97, 128, 132, 196, 197
HaeIII GGCC 1 cut(s) 114
HinfI GANTC 1 cut(s) 201
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 13
Hpy8I GTNNAC 1 cut(s) 13
HpyCH4III ACNGT 1 cut(s) 175
HpyCH4IV ACGT 1 cut(s) 45
HpyCH4V TGCA 1 cut(s) 132
HpyF3I CTNAG 1 cut(s) 27
HpySE526I ACGT 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 3 cut(s) 51, 72, 196
LpnPI CCDG 1 cut(s) 132
LweI GCATC 1 cut(s) 13
MaeI CTAG 1 cut(s) 110
MaeII ACGT 1 cut(s) 45
MaeIII GTNAC 1 cut(s) 178
MalI GATC 3 cut(s) 53, 74, 198
MboI GATC 3 cut(s) 51, 72, 196
MfeI CAATTG 1 cut(s) 127
MluCI AATT 2 cut(s) 127, 152
MlyI GAGTC 1 cut(s) 210
MroXI GAANNNNTTC 1 cut(s) 105
MseI TTAA 1 cut(s) 232
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 1 cut(s) 38
NdeII GATC 3 cut(s) 51, 72, 196
PcsI WCGNNNNNNNCGW 1 cut(s) 42
PctI GAATGC 1 cut(s) 38
PdmI GAANNNNTTC 1 cut(s) 105
PleI GAGTC 1 cut(s) 209
PpsI GAGTC 1 cut(s) 209
Ppu21I YACGTR 1 cut(s) 46
SaqAI TTAA 1 cut(s) 232
Sau3AI GATC 3 cut(s) 51, 72, 196
SchI GAGTC 1 cut(s) 210
SetI ASST 4 cut(s) 48, 71, 86, 160
SfaNI GCATC 1 cut(s) 13
SfcI CTRYAG 1 cut(s) 174
SgeI CNNG 8 cut(s) 56, 74, 82, 122, 159, 171, 206, 212
Sse9I AATT 2 cut(s) 127, 152
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 110
TaaI ACNGT 1 cut(s) 175
TaiI ACGT 1 cut(s) 48
TaqI TCGA 2 cut(s) 160, 199
TasI AATT 2 cut(s) 127, 152
Tru1I TTAA 1 cut(s) 232
Tru9I TTAA 1 cut(s) 232
TscAI CASTG 1 cut(s) 178
TspDTI ATGAA 1 cut(s) 204
TspRI CASTG 1 cut(s) 178
XmnI GAANNNNTTC 1 cut(s) 105
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.