Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

15554653 .. 15556471

Gene Structure 1819 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30139

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCGGATGTGAAGATGGCTGATGCTGAGACGTTTGCTTTCCAGACCGAGATCAACCAGCTTCTGAGCTTGATCATCAATACGTTCTACAGCAACAAGGAGATTTTTCTTCGCGAGCTTATCAGCAATTCATCTGATGCTCTGGACAAGATTAGATTCAAGAGTCTTACGGATAAGAGCAAGCTTGATGCTCAGCCGGAGCTTTTCATCAGGATTGTTCCGGATAAGACCAACAATATTCTCTCCATCATTTATAGCGGGATCGGCATGACCAAAGCAGATTTGGTGAACAATATGGGCACAATTGCAAGGTCTGGAACCAAGGAGTTTATGGAAGCATTGGCTTCTGGAGTTTCTGATGTGAGCATGATTGGACAGTTTGGTGTTGGTTTCTATTCGGCATATCTTGTTGCAGAGAAGGTCATTGTGACTACAAAGCACAATGATGATGAGCAATACATCTGGGAGTCTCAGGCTGGTGGTTCATTCACAGTGACAAGGGATGTCAATGGCGAGCAGCTTCGCAGGGGCACCAAGATCACTTTCTTCCTCAAGGAGGACCAGTTGGAATACTTGGAAGAGAGGAGGATCAAAGACCTTGTGAAGAAGCATTCCGAATTTATCAGCTATCCCATCTACTTGTGGACTGAGAAGACAGCTGAAAAGGAGATCAGTGATGATGAAGAGGATGAACCCAAGAAGGAAGAGAAGGGAGATATTGAGGATGTTGATGAGGACAAGGAGAAAGAAGGGAAGAAGAAGAAGAAGAAGATCAAGGAAGTTTCTCATGAGTGGGAACTCATCAACAAGCAGAAACCAATTTGGCTGCACAAGCCTAAGGAAATCACCAAGGATGAATATGCCTCATTCTACAAGAGCTTGACCAATGATTGGGAGGAACACCTTGCTGTGAAGCACTTCTCTGTGGAAGGACAGCTTGAATTCAAAGCCTCCTCTTTGTTCCAAAGAGGGCTCCATTCGACCTGTTTGATACCAGGAAGAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

335

Amino Acids

38.62

Weight (kDa)

5.42

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	34 - 187	9.1e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	35 - 152	1.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	190 - 317	2.1e-46	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	530
AccB7I	CCANNNNNTGG	1 cut(s)	891
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	220
AciI	CCGC	2 cut(s)	5, 258
AclWI	GGATC	2 cut(s)	269, 596
AcsI	RAATTY	2 cut(s)	617, 941
AfiI	CCNNNNNNNGG	2 cut(s)	556, 891
AgsI	TTSAA	3 cut(s)	160, 941, 946
AjnI	CCWGG	1 cut(s)	994
AjuI	GAANNNNNNNTTGG	2 cut(s)	527, 559
Alw26I	GTCTC	2 cut(s)	23, 474
AlwI	GGATC	2 cut(s)	269, 596
AlwNI	CAGNNNCTG	1 cut(s)	64
Aor13HI	TCCGGA	1 cut(s)	220
ApeKI	GCWGC	2 cut(s)	517, 826
ApoI	RAATTY	2 cut(s)	617, 941
Asp700I	GAANNNNTTC	1 cut(s)	917
AspS9I	GGNCC	1 cut(s)	559
AsuHPI	GGTGA	2 cut(s)	298, 838
AvaII	GGWCC	1 cut(s)	559
AxyI	CCTNAGG	1 cut(s)	837
BaeGI	GKGCMC	2 cut(s)	302, 533
BanI	GGYRCC	1 cut(s)	530
BanII	GRGCYC	1 cut(s)	975
BbsI	GAAGAC	1 cut(s)	659
BbvI	GCAGC	2 cut(s)	529, 813
BccI	CCATC	3 cut(s)	10, 254, 641
BciT130I	CCWGG	1 cut(s)	996
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	23, 474
BfmI	CTRYAG	1 cut(s)	88
BisI	GCNGC	2 cut(s)	518, 827
BlpI	GCTNAGC	1 cut(s)	192
BlsI	GCNGC	2 cut(s)	519, 828
Bme1390I	CCNGG	1 cut(s)	996
Bme18I	GGWCC	1 cut(s)	559
BmgT120I	GGNCC	1 cut(s)	559
BmiI	GGNNCC	3 cut(s)	319, 532, 974
BmrFI	CCNGG	1 cut(s)	996
BmsI	GCATC	3 cut(s)	13, 127, 178
BpiI	GAAGAC	1 cut(s)	659
BpmI	CTGGAG	1 cut(s)	369
Bpu1102I	GCTNAGC	1 cut(s)	192
BpuEI	CTTGAG	1 cut(s)	536
BsaJI	CCNNGG	2 cut(s)	321, 849
BsaWI	WCCGGW	1 cut(s)	220
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bsc4I	CCNNNNNNNGG	2 cut(s)	556, 891
Bse1I	ACTGG	1 cut(s)	562
Bse21I	CCTNAGG	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	1 cut(s)	996
BseDI	CCNNGG	2 cut(s)	321, 849
BseGI	GGATG	5 cut(s)	13, 508, 694, 730, 859
BseLI	CCNNNNNNNGG	2 cut(s)	556, 891
BseMII	CTCAG	5 cut(s)	18, 56, 206, 485, 639
BseNI	ACTGG	1 cut(s)	562
BseRI	GAGGAG	2 cut(s)	598, 943
BseSI	GKGCMC	2 cut(s)	302, 533
BseXI	GCAGC	2 cut(s)	529, 813
BsgI	GTGCAG	1 cut(s)	812
Bsh1236I	CGCG	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	530
BsiSI	CCGG	2 cut(s)	197, 221
BslI	CCNNNNNNNGG	2 cut(s)	556, 891
BsmAI	GTCTC	2 cut(s)	23, 474
BsmBI	CGTCTC	1 cut(s)	23
BsmI	GAATGC	1 cut(s)	610
Bsp1286I	GDGCHC	3 cut(s)	302, 533, 975
Bsp13I	TCCGGA	1 cut(s)	220
Bsp143I	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
Bsp1720I	GCTNAGC	1 cut(s)	192
Bsp68I	TCGCGA	1 cut(s)	114
BspACI	CCGC	2 cut(s)	5, 258
BspCNI	CTCAG	5 cut(s)	19, 57, 205, 484, 640
BspEI	TCCGGA	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	787
BspLI	GGNNCC	3 cut(s)	319, 532, 974
BspPI	GGATC	2 cut(s)	269, 596
BspT107I	GGYRCC	1 cut(s)	530
BsrI	ACTGG	1 cut(s)	562
BssECI	CCNNGG	2 cut(s)	321, 849
BssMI	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
BssT1I	CCWWGG	2 cut(s)	321, 849
Bst2UI	CCWGG	1 cut(s)	996
Bst4CI	ACNGT	2 cut(s)	378, 493
Bst6I	CTCTTC	3 cut(s)	573, 678, 699
BstC8I	GCNNGC	3 cut(s)	116, 182, 515
BstDEI	CTNAG	6 cut(s)	27, 65, 192, 471, 648, 837
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	5 cut(s)	13, 508, 694, 730, 859
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	7 cut(s)	54, 75, 264, 540, 591, 672, 774
BstMAI	GTCTC	2 cut(s)	23, 474
BstMBI	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
BstMWI	GCNNNNNNNGC	2 cut(s)	264, 832
BstNI	CCWGG	1 cut(s)	996
BstSCI	CCNGG	1 cut(s)	994
BstSFI	CTRYAG	1 cut(s)	88
BstSLI	GKGCMC	2 cut(s)	302, 533
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	2 cut(s)	529, 813
BstV2I	GAAGAC	1 cut(s)	659
Bsu36I	CCTNAGG	1 cut(s)	837
BtsCI	GGATG	5 cut(s)	13, 508, 694, 730, 859
BtsIMutI	CAGTG	2 cut(s)	498, 679
BtuMI	TCGCGA	1 cut(s)	114
Cac8I	GCNNGC	3 cut(s)	116, 182, 515
CaiI	CAGNNNCTG	1 cut(s)	64
CciI	TCATGA	1 cut(s)	787
Cfr13I	GGNCC	1 cut(s)	559
CviAII	CATG	3 cut(s)	268, 367, 788
DdeI	CTNAG	6 cut(s)	27, 65, 192, 471, 648, 837
DpnI	GATC	7 cut(s)	53, 74, 263, 539, 590, 671, 773
DpnII	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
Eam1104I	CTCTTC	3 cut(s)	573, 678, 699
EarI	CTCTTC	3 cut(s)	573, 678, 699
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	321, 849
Eco24I	GRGCYC	1 cut(s)	975
Eco47I	GGWCC	1 cut(s)	559
Eco81I	CCTNAGG	1 cut(s)	837
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoRI	GAATTC	1 cut(s)	941
EcoRII	CCWGG	1 cut(s)	994
EcoT14I	CCWWGG	2 cut(s)	321, 849
EcoT38I	GRGCYC	1 cut(s)	975
ErhI	CCWWGG	2 cut(s)	321, 849
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	3 cut(s)	271, 370, 791
FaiI	YATR	8 cut(s)	255, 269, 296, 332, 368, 403, 789, 861
FalI	AAGNNNNNCTT	2 cut(s)	921, 953
FatI	CATG	3 cut(s)	267, 366, 787
FauI	CCCGC	1 cut(s)	251
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	2 cut(s)	518, 827
FokI	GGATG	5 cut(s)	20, 515, 701, 737, 866
FriOI	GRGCYC	1 cut(s)	975
Fsp4HI	GCNGC	2 cut(s)	518, 827
GluI	GCNGC	2 cut(s)	518, 827
GsuI	CTGGAG	1 cut(s)	369
HapII	CCGG	2 cut(s)	197, 221
Hin1II	CATG	3 cut(s)	271, 370, 791
HindIII	AAGCTT	1 cut(s)	182
HinfI	GANTC	3 cut(s)	156, 163, 467
HpaII	CCGG	2 cut(s)	197, 221
HphI	GGTGA	2 cut(s)	298, 838
Hpy166II	GTNNAC	2 cut(s)	289, 645
Hpy188I	TCNGA	4 cut(s)	66, 136, 358, 616
Hpy188III	TCNNGA	9 cut(s)	43, 113, 143, 160, 211, 221, 315, 348, 788
Hpy8I	GTNNAC	2 cut(s)	289, 645
HpyAV	CCTTC	5 cut(s)	412, 694, 703, 743, 923
HpyCH4III	ACNGT	2 cut(s)	378, 493
HpyCH4IV	ACGT	2 cut(s)	32, 83
HpyCH4V	TGCA	3 cut(s)	308, 413, 829
HpyF10VI	GCNNNNNNNGC	2 cut(s)	264, 832
HpyF3I	CTNAG	6 cut(s)	27, 65, 192, 471, 648, 837
HpySE526I	ACGT	2 cut(s)	32, 83
Hsp92II	CATG	3 cut(s)	271, 370, 791
Kpn2I	TCCGGA	1 cut(s)	220
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
LmnI	GCTCC	2 cut(s)	199, 978
Lsp1109I	GCAGC	2 cut(s)	529, 813
LweI	GCATC	3 cut(s)	13, 127, 178
MaeII	ACGT	2 cut(s)	32, 83
MaeIII	GTNAC	2 cut(s)	427, 493
MalI	GATC	7 cut(s)	53, 74, 263, 539, 590, 671, 773
MboI	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
MfeI	CAATTG	1 cut(s)	303
MhlI	GDGCHC	3 cut(s)	302, 533, 975
MluCI	AATT	5 cut(s)	127, 303, 617, 819, 941
MlyI	GAGTC	2 cut(s)	172, 476
MmeI	TCCRAC	1 cut(s)	546
MroI	TCCGGA	1 cut(s)	220
MroXI	GAANNNNTTC	1 cut(s)	917
MslI	CAYNNNNRTG	1 cut(s)	444
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	2 cut(s)	197, 221
MspR9I	CCNGG	1 cut(s)	996
MunI	CAATTG	1 cut(s)	303
Mva1269I	GAATGC	1 cut(s)	610
MvaI	CCWGG	1 cut(s)	996
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	264, 832
NdeII	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
NlaIII	CATG	3 cut(s)	271, 370, 791
NlaIV	GGNNCC	3 cut(s)	319, 532, 974
NmuCI	GTSAC	2 cut(s)	427, 493
NruI	TCGCGA	1 cut(s)	114
PagI	TCATGA	1 cut(s)	787
PctI	GAATGC	1 cut(s)	610
PdmI	GAANNNNTTC	1 cut(s)	917
PfeI	GAWTC	1 cut(s)	156
PflMI	CCANNNNNTGG	1 cut(s)	891
PkrI	GCNGC	2 cut(s)	519, 828
PleI	GAGTC	2 cut(s)	171, 475
PpsI	GAGTC	2 cut(s)	171, 475
Psp6I	CCWGG	1 cut(s)	994
PspGI	CCWGG	1 cut(s)	994
PspN4I	GGNNCC	3 cut(s)	319, 532, 974
PspPI	GGNCC	1 cut(s)	559
PstNI	CAGNNNCTG	1 cut(s)	64
PvuII	CAGCTG	1 cut(s)	659
RruI	TCGCGA	1 cut(s)	114
RseI	CAYNNNNRTG	1 cut(s)	444
SatI	GCNGC	2 cut(s)	518, 827
Sau3AI	GATC	7 cut(s)	51, 72, 261, 537, 588, 669, 771
Sau96I	GGNCC	1 cut(s)	559
SchI	GAGTC	2 cut(s)	172, 476
ScrFI	CCNGG	1 cut(s)	996
SduI	GDGCHC	3 cut(s)	302, 533, 975
SfaNI	GCATC	3 cut(s)	13, 127, 178
SfcI	CTRYAG	1 cut(s)	88
SinI	GGWCC	1 cut(s)	559
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	5 cut(s)	127, 303, 617, 819, 941
SsiI	CCGC	2 cut(s)	5, 258
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	994
StyI	CCWWGG	2 cut(s)	321, 849
TaaI	ACNGT	2 cut(s)	378, 493
TaiI	ACGT	2 cut(s)	35, 86
TaqI	TCGA	1 cut(s)	980
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	5 cut(s)	127, 303, 617, 819, 941
TfiI	GAWTC	1 cut(s)	156
TscAI	CASTG	2 cut(s)	498, 679
TseFI	GTSAC	2 cut(s)	427, 493
TseI	GCWGC	2 cut(s)	517, 826
Tsp45I	GTSAC	2 cut(s)	427, 493
TspDTI	ATGAA	6 cut(s)	120, 196, 474, 696, 705, 870
TspGWI	ACGGA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	498, 679
Van91I	CCANNNNNTGG	1 cut(s)	891
VpaK11BI	GGWCC	1 cut(s)	559
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	2 cut(s)	617, 941
XcmI	CCANNNNNNNNNTGG	2 cut(s)	280, 328
XmnI	GAANNNNTTC	1 cut(s)	917

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.