Rh5DG155600

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
15834167 .. 15834951
785 bp
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UTR
Exon/CDS
Intron
Rh5DG155600.1

Sequence Viewer

Length: 318 bp
ATGGAGAGGATTATGAAGGCTCAGGCACTCAGGGACAACAGCATGGGTGCTCACATGTCCAGCAAGAAGACCATGGAAATCAACCCTGACAATGGCATCATGGAGGAGCTGAGGAAGAGAGCCAAAGCTGACAAAAATGACAAGTCCGTCAAGGACCTTGTGCTGCTGCTGTTTGAGACAGCTCTGCTGACATCTGGATTCAGCCTTGATGAGCCGAAGCTGGGGCTTAGCATTGATGAAGACGAGACTGTTGAGGATGCGGACATGCCTGAGCTGGAGGATGCGGCTGAGGAGAGCAAAATGGAGGAAGTGGACTAA

Protein Analysis

105

Amino Acids

11.78

Weight (kDa)

4.41

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 1 - 73 8.3e-26 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 146
AciI CCGC 2 cut(s) 260, 284
AfiI CCNNNNNNNGG 2 cut(s) 92, 221
AflIII ACRYGT 1 cut(s) 54
AluBI AGCT 5 cut(s) 109, 128, 182, 220, 274
AluI AGCT 5 cut(s) 109, 128, 182, 220, 274
Alw21I GWGCWC 1 cut(s) 52
Alw26I GTCTC 2 cut(s) 170, 239
ApeKI GCWGC 2 cut(s) 163, 166
AspS9I GGNCC 1 cut(s) 154
AvaII GGWCC 1 cut(s) 154
BbsI GAAGAC 2 cut(s) 74, 246
Bbv12I GWGCWC 1 cut(s) 52
BbvCI CCTCAGC 2 cut(s) 110, 288
BbvI GCAGC 2 cut(s) 150, 153
BcoDI GTCTC 2 cut(s) 170, 239
BisI GCNGC 3 cut(s) 164, 167, 285
BlpI GCTNAGC 1 cut(s) 227
BlsI GCNGC 3 cut(s) 165, 168, 286
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 3 cut(s) 105, 247, 271
BpiI GAAGAC 2 cut(s) 74, 246
BpmI CTGGAG 1 cut(s) 296
Bpu10I CCTNAGC 4 cut(s) 21, 110, 270, 288
Bpu1102I GCTNAGC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 72
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 221
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 2 cut(s) 262, 286
BseLI CCNNNNNNNGG 2 cut(s) 92, 221
BseMII CTCAG 5 cut(s) 35, 43, 101, 261, 279
BseRI GAGGAG 2 cut(s) 119, 305
BseXI GCAGC 2 cut(s) 150, 153
BseYI CCCAGC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 52
BslFI GGGAC 1 cut(s) 47
BslI CCNNNNNNNGG 2 cut(s) 92, 221
BsmAI GTCTC 2 cut(s) 170, 239
BsmFI GGGAC 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 52
Bsp1720I GCTNAGC 1 cut(s) 227
Bsp19I CCATGG 1 cut(s) 72
BspACI CCGC 2 cut(s) 260, 284
BspCNI CTCAG 5 cut(s) 34, 42, 102, 262, 280
BssECI CCNNGG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 72
Bst4CI ACNGT 1 cut(s) 250
Bst6I CTCTTC 1 cut(s) 110
BstDEI CTNAG 6 cut(s) 21, 29, 110, 227, 270, 288
BstDSI CCRYGG 1 cut(s) 72
BstF5I GGATG 2 cut(s) 262, 286
BstMAI GTCTC 2 cut(s) 170, 239
BstNSI RCATGY 2 cut(s) 58, 268
BstV1I GCAGC 2 cut(s) 150, 153
BstV2I GAAGAC 2 cut(s) 74, 246
BtgI CCRYGG 1 cut(s) 72
BtsCI GGATG 2 cut(s) 262, 286
Cfr13I GGNCC 1 cut(s) 154
CviAII CATG 5 cut(s) 43, 55, 73, 100, 265
DdeI CTNAG 6 cut(s) 21, 29, 110, 227, 270, 288
DrdI GACNNNNNNGTC 1 cut(s) 146
DseDI GACNNNNNNGTC 1 cut(s) 146
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 154
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 72
ErhI CCWWGG 1 cut(s) 72
FaeI CATG 5 cut(s) 46, 58, 76, 103, 268
FaiI YATR 6 cut(s) 14, 44, 56, 74, 101, 266
FaqI GGGAC 1 cut(s) 47
FatI CATG 5 cut(s) 42, 54, 72, 99, 264
Fnu4HI GCNGC 3 cut(s) 164, 167, 285
FokI GGATG 2 cut(s) 269, 293
Fsp4HI GCNGC 3 cut(s) 164, 167, 285
GluI GCNGC 3 cut(s) 164, 167, 285
GsaI CCCAGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 296
Hin1II CATG 5 cut(s) 46, 58, 76, 103, 268
HinfI GANTC 1 cut(s) 198
Hpy166II GTNNAC 1 cut(s) 313
Hpy188III TCNNGA 1 cut(s) 195
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 250
HpyF3I CTNAG 6 cut(s) 21, 29, 110, 227, 270, 288
Hsp92II CATG 5 cut(s) 46, 58, 76, 103, 268
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 8 cut(s) 8, 16, 73, 99, 180, 206, 260, 282
Lsp1109I GCAGC 2 cut(s) 150, 153
LweI GCATC 3 cut(s) 105, 247, 271
MboII GAAGA 3 cut(s) 79, 127, 251
MhlI GDGCHC 1 cut(s) 52
MnlI CCTC 6 cut(s) 97, 105, 247, 271, 283, 298
NcoI CCATGG 1 cut(s) 72
NlaIII CATG 5 cut(s) 46, 58, 76, 103, 268
NspI RCATGY 2 cut(s) 58, 268
PciI ACATGT 1 cut(s) 54
PfeI GAWTC 1 cut(s) 198
PkrI GCNGC 3 cut(s) 165, 168, 286
PpuMI RGGWCCY 1 cut(s) 154
PscI ACATGT 1 cut(s) 54
Psp5II RGGWCCY 1 cut(s) 154
PspFI CCCAGC 1 cut(s) 220
PspPI GGNCC 1 cut(s) 154
PspPPI RGGWCCY 1 cut(s) 154
SatI GCNGC 3 cut(s) 164, 167, 285
Sau96I GGNCC 1 cut(s) 154
SduI GDGCHC 1 cut(s) 52
SetI ASST 6 cut(s) 111, 130, 159, 184, 222, 276
SfaNI GCATC 3 cut(s) 105, 247, 271
SinI GGWCC 1 cut(s) 154
SsiI CCGC 2 cut(s) 260, 284
StyI CCWWGG 1 cut(s) 72
TaaI ACNGT 1 cut(s) 250
TauI GCSGC 1 cut(s) 287
TfiI GAWTC 1 cut(s) 198
TseI GCWGC 2 cut(s) 163, 166
TspDTI ATGAA 2 cut(s) 29, 252
TspGWI ACGGA 1 cut(s) 136
VpaK11BI GGWCC 1 cut(s) 154
XceI RCATGY 2 cut(s) 58, 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.