Rorug01G0408500

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000335
Physical Location & Seq
Forward (+)
51460186 .. 51462799
2614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0408500.1

Sequence Viewer

Length: 1170 bp
ATGGAGCACCAGCACAGCAGCCTCACCACAGCTTACATTCGCTACCCTTTTAAATTTCACCACAACATTTTCAAAAATACGACAAGCCAAACCAAGCAAACCATGGATAACATTAGTGAAACCGTTTCTTTAATTCACCATGGTTGCAACTTGGCTAGAGACCTGGAATCAAACCTTCCCAACTTGGCAAGCCGACCCGAAACCTTTTCGAAATCCTTGGACGAGATAATGAGGGTTTTCGGTGCAGCAAGGGAGAGGCTGCAGAGTAGTAGTGCTGCACAACATGATCCAATGAGTTCATACGTTCATGTAGCGCAGCAGCAGCAGCAGATCGATGCGAGCTTACTGGAATGGCTGAGGTGTAATTACACACAGGCAACGGATGATCATCACATCCAAACGCAGCGTTTTGCATCCGAAAAGAGTAGTGCTGCTACTCAATCCGATATGAGGGATTCAGGAGCTGACGTACTTCAAGGCCAAATCCATCAGGCAATGGATCATATTGTAACAGTCGTTTCTCATGAACTGAATGCTGCTTCGTCCTCACAAAGCAGACCACGAAGAAGGAGGGACCATGGGGAAATTCGTAAATTGACCGTGCCGGCACCTCGGATCGGGAATACTGAAATCCCACCGGAGGATGGCTTCACTTGGCGAAAATACGGCCAGAAGGAAATCATGGGCTGCAGGTTCCCAAGGGGCTACTATAGGTGTACCCACCAAAAGTTATACAATTGCCCAGCCAAGAAGCAAGTTCAGAGGCTTGACAATGATCCCTTAACATTTGAAGTAATGTACAGAGGTGACCATACATGTCATATGTCGTCCACTGCACCCTCAAGCCTACCACCATCTGATCAAATTAAGCAAGAGACTACGACCCAAACTCATGCGGCAACCACTCAACCCTTAGGAACATGGCTCTCCATGGACTTCAACGCGAAAGGCGGAGGAAGCAGCAGTGGTGGTGGCCGCGGTGATGGTGATGGTGATTGTGTAGGTACATCAATCACGACGACCACTCGTTATGGTAAAGACGTTGAGTTTCCGGTGGTGGATTTGGCTGATGCAATGTTTAATTCAGGGAGTAGCAGCAGTAATAGTATGGATTTTATGTTCACTTCATCTATGGACAGTAAATGGGAGTCCGGGGACAAGAAAAATTGA

Protein Analysis

389

Amino Acids

43.42

Weight (kDa)

6.65

Isoelectric Point (pI)

50.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WRKY PF03106 214 - 274 3.5e-25 WRKY DNA -binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 681
AccB1I GGYRCC 1 cut(s) 607
AccII CGCG 2 cut(s) 944, 978
AciI CCGC 4 cut(s) 896, 951, 976, 978
AclWI GGATC 4 cut(s) 281, 507, 623, 770
AcoI YGGCCR 2 cut(s) 667, 973
AcsI RAATTY 2 cut(s) 53, 585
AfaI GTAC 4 cut(s) 471, 718, 800, 1006
AfiI CCNNNNNNNGG 4 cut(s) 450, 617, 640, 644
AflIII ACRYGT 1 cut(s) 815
AgsI TTSAA 4 cut(s) 73, 476, 791, 940
AjnI CCWGG 1 cut(s) 162
AloI GAACNNNNNNTCC 2 cut(s) 1103, 1135
AluBI AGCT 3 cut(s) 32, 342, 464
AluI AGCT 3 cut(s) 32, 342, 464
Alw21I GWGCWC 1 cut(s) 9
Alw26I GTCTC 2 cut(s) 153, 869
AlwI GGATC 4 cut(s) 281, 507, 623, 770
AlwNI CAGNNNCTG 1 cut(s) 464
AoxI GGCC 3 cut(s) 478, 667, 973
ApoI RAATTY 2 cut(s) 53, 585
AspLEI GCGC 1 cut(s) 316
AspS9I GGNCC 1 cut(s) 574
AsuC2I CCSGG 1 cut(s) 1153
AsuHPI GGTGA 7 cut(s) 16, 50, 128, 818, 992, 998, 1004
AsuII TTCGAA 1 cut(s) 209
AvaII GGWCC 1 cut(s) 574
AxyI CCTNAGG 1 cut(s) 913
BanI GGYRCC 1 cut(s) 607
Bbv12I GWGCWC 1 cut(s) 9
BbvCI CCTCAGC 1 cut(s) 356
BccI CCATC 5 cut(s) 495, 638, 862, 977, 983
BceAI ACGGC 1 cut(s) 682
BciT130I CCWGG 1 cut(s) 164
BclI TGATCA 2 cut(s) 385, 859
BcnI CCSGG 1 cut(s) 1153
BcoDI GTCTC 2 cut(s) 153, 869
BfaI CTAG 1 cut(s) 156
BfmI CTRYAG 3 cut(s) 260, 688, 709
BfuAI ACCTGC 1 cut(s) 681
Bme1390I CCNGG 2 cut(s) 164, 1153
Bme18I GGWCC 1 cut(s) 574
BmgT120I GGNCC 1 cut(s) 574
BmiI GGNNCC 3 cut(s) 575, 609, 695
BmrFI CCNGG 2 cut(s) 164, 1153
BmsI GCATC 3 cut(s) 325, 422, 1060
Bpu10I CCTNAGC 1 cut(s) 356
Bpu14I TTCGAA 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 826
BpuMI CCSGG 1 cut(s) 1153
Bsa29I ATCGAT 1 cut(s) 333
BsaBI GATNNNNATC 1 cut(s) 387
BsaI GGTCTC 1 cut(s) 153
BsaJI CCNNGG 9 cut(s) 102, 139, 216, 577, 611, 698, 930, 976, 1152
BsaWI WCCGGW 2 cut(s) 637, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 453, 483
Bsc4I CCNNNNNNNGG 4 cut(s) 450, 617, 640, 644
Bse118I RCCGGY 1 cut(s) 604
Bse1I ACTGG 1 cut(s) 351
Bse21I CCTNAGG 1 cut(s) 913
Bse3DI GCAATG 2 cut(s) 501, 1080
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 1 cut(s) 164
BseCI ATCGAT 1 cut(s) 333
BseDI CCNNGG 9 cut(s) 102, 139, 216, 577, 611, 698, 930, 976, 1152
BseGI GGATG 4 cut(s) 388, 393, 413, 649
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 4 cut(s) 450, 617, 640, 644
BseMI GCAATG 2 cut(s) 501, 1080
BseMII CTCAG 1 cut(s) 347
BseNI ACTGG 1 cut(s) 351
BseYI CCCAGC 1 cut(s) 742
BsgI GTGCAG 3 cut(s) 261, 264, 819
Bsh1236I CGCG 2 cut(s) 944, 978
BshFI GGCC 3 cut(s) 480, 669, 975
BshNI GGYRCC 1 cut(s) 607
BshVI ATCGAT 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 9
BsiSI CCGG 4 cut(s) 605, 638, 1052, 1152
BslFI GGGAC 1 cut(s) 587
BslI CCNNNNNNNGG 4 cut(s) 450, 617, 640, 644
BsmAI GTCTC 2 cut(s) 153, 869
BsmFI GGGAC 1 cut(s) 587
BsmI GAATGC 1 cut(s) 538
BsnI GGCC 3 cut(s) 480, 669, 975
Bso31I GGTCTC 1 cut(s) 153
Bsp119I TTCGAA 1 cut(s) 209
Bsp1286I GDGCHC 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 798
Bsp143I GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
Bsp19I CCATGG 4 cut(s) 102, 139, 577, 930
BspACI CCGC 4 cut(s) 896, 951, 976, 978
BspANI GGCC 3 cut(s) 480, 669, 975
BspCNI CTCAG 1 cut(s) 348
BspDI ATCGAT 1 cut(s) 333
BspFNI CGCG 2 cut(s) 944, 978
BspHI TCATGA 1 cut(s) 523
BspLI GGNNCC 3 cut(s) 575, 609, 695
BspMAI CTGCAG 2 cut(s) 264, 692
BspMI ACCTGC 1 cut(s) 681
BspPI GGATC 4 cut(s) 281, 507, 623, 770
BspT104I TTCGAA 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 607
BspTNI GGTCTC 1 cut(s) 153
BsrDI GCAATG 2 cut(s) 501, 1080
BsrFI RCCGGY 1 cut(s) 604
BsrGI TGTACA 1 cut(s) 798
BsrI ACTGG 1 cut(s) 351
BssAI RCCGGY 1 cut(s) 604
BssECI CCNNGG 9 cut(s) 102, 139, 216, 577, 611, 698, 930, 976, 1152
BssMI GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
BssT1I CCWWGG 6 cut(s) 102, 139, 216, 577, 698, 930
Bst2UI CCWGG 1 cut(s) 164
Bst4CI ACNGT 4 cut(s) 124, 514, 601, 1139
BstAUI TGTACA 1 cut(s) 798
BstBI TTCGAA 1 cut(s) 209
BstC8I GCNNGC 3 cut(s) 190, 340, 606
BstDEI CTNAG 2 cut(s) 356, 913
BstDSI CCRYGG 5 cut(s) 102, 139, 577, 930, 976
BstEII GGTNACC 1 cut(s) 806
BstF5I GGATG 4 cut(s) 388, 393, 413, 649
BstFNI CGCG 2 cut(s) 944, 978
BstHHI GCGC 1 cut(s) 316
BstKTI GATC 7 cut(s) 289, 333, 388, 502, 618, 778, 862
BstMAI GTCTC 2 cut(s) 153, 869
BstMBI GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
BstMWI GCNNNNNNNGC 3 cut(s) 322, 325, 957
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 819
BstPI GGTNACC 1 cut(s) 806
BstSCI CCNGG 2 cut(s) 162, 1151
BstSFI CTRYAG 3 cut(s) 260, 688, 709
BstUI CGCG 2 cut(s) 944, 978
Bsu15I ATCGAT 1 cut(s) 333
Bsu36I CCTNAGG 1 cut(s) 913
BsuRI GGCC 3 cut(s) 480, 669, 975
BsuTUI ATCGAT 1 cut(s) 333
BtgI CCRYGG 5 cut(s) 102, 139, 577, 930, 976
BtsCI GGATG 4 cut(s) 388, 393, 413, 649
BtsI GCAGTG 2 cut(s) 831, 970
BtsIMutI CAGTG 2 cut(s) 831, 970
BveI ACCTGC 1 cut(s) 681
Cac8I GCNNGC 3 cut(s) 190, 340, 606
CaiI CAGNNNCTG 1 cut(s) 464
CciI TCATGA 1 cut(s) 523
CfoI GCGC 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 604
Cfr13I GGNCC 1 cut(s) 574
Cfr42I CCGCGG 1 cut(s) 979
ClaI ATCGAT 1 cut(s) 333
Csp6I GTAC 4 cut(s) 470, 717, 799, 1005
CviQI GTAC 4 cut(s) 470, 717, 799, 1005
DdeI CTNAG 2 cut(s) 356, 913
DpnI GATC 7 cut(s) 288, 332, 387, 501, 617, 777, 861
DpnII GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
DraI TTTAAA 1 cut(s) 52
EaeI YGGCCR 2 cut(s) 667, 973
EciI GGCGGA 1 cut(s) 966
Eco130I CCWWGG 6 cut(s) 102, 139, 216, 577, 698, 930
Eco31I GGTCTC 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 574
Eco81I CCTNAGG 1 cut(s) 913
Eco91I GGTNACC 1 cut(s) 806
EcoO65I GGTNACC 1 cut(s) 806
EcoRII CCWGG 1 cut(s) 162
EcoT14I CCWWGG 6 cut(s) 102, 139, 216, 577, 698, 930
ErhI CCWWGG 6 cut(s) 102, 139, 216, 577, 698, 930
FaqI GGGAC 1 cut(s) 587
FauNDI CATATG 1 cut(s) 822
FbaI TGATCA 2 cut(s) 385, 859
FokI GGATG 4 cut(s) 380, 395, 400, 656
FspBI CTAG 1 cut(s) 156
GlaI GCGC 1 cut(s) 315
GsaI CCCAGC 1 cut(s) 746
HaeIII GGCC 3 cut(s) 480, 669, 975
HapII CCGG 4 cut(s) 605, 638, 1052, 1152
HhaI GCGC 1 cut(s) 316
Hin6I GCGC 1 cut(s) 314
HinP1I GCGC 1 cut(s) 314
HinfI GANTC 3 cut(s) 167, 455, 1148
HpaII CCGG 4 cut(s) 605, 638, 1052, 1152
HphI GGTGA 7 cut(s) 16, 50, 128, 818, 992, 998, 1004
Hpy166II GTNNAC 3 cut(s) 717, 831, 1122
Hpy188I TCNGA 5 cut(s) 418, 445, 615, 762, 859
Hpy188III TCNNGA 4 cut(s) 459, 524, 619, 1015
Hpy8I GTNNAC 3 cut(s) 717, 831, 1122
Hpy99I CGWCG 1 cut(s) 1021
HpyAV CCTTC 3 cut(s) 185, 561, 667
HpyCH4III ACNGT 4 cut(s) 124, 514, 601, 1139
HpyCH4IV ACGT 3 cut(s) 303, 468, 1041
HpyCH4V TGCA 8 cut(s) 147, 245, 262, 278, 413, 690, 836, 1073
HpyF10VI GCNNNNNNNGC 3 cut(s) 322, 325, 957
HpyF3I CTNAG 2 cut(s) 356, 913
HpySE526I ACGT 3 cut(s) 303, 468, 1041
HspAI GCGC 1 cut(s) 314
KroI GCCGGC 1 cut(s) 604
KroNI GCCGGC 1 cut(s) 606
Ksp22I TGATCA 2 cut(s) 385, 859
KspI CCGCGG 1 cut(s) 979
Kzo9I GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
LmnI GCTCC 2 cut(s) 4, 461
LweI GCATC 3 cut(s) 325, 422, 1060
MaeI CTAG 1 cut(s) 156
MaeII ACGT 3 cut(s) 303, 468, 1041
MaeIII GTNAC 2 cut(s) 508, 806
MalI GATC 7 cut(s) 288, 332, 387, 501, 617, 777, 861
MboI GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
MboII GAAGA 1 cut(s) 576
MfeI CAATTG 1 cut(s) 736
MhlI GDGCHC 1 cut(s) 9
MluCI AATT 9 cut(s) 53, 132, 364, 585, 593, 736, 864, 1081, 1165
MlyI GAGTC 1 cut(s) 1157
MroNI GCCGGC 1 cut(s) 604
MseI TTAA 5 cut(s) 51, 131, 782, 867, 1080
MspA1I CMGCKG 1 cut(s) 978
MspI CCGG 4 cut(s) 605, 638, 1052, 1152
MspR9I CCNGG 2 cut(s) 164, 1153
MunI CAATTG 1 cut(s) 736
Mva1269I GAATGC 1 cut(s) 538
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 2 cut(s) 944, 978
MwoI GCNNNNNNNGC 3 cut(s) 322, 325, 957
NaeI GCCGGC 1 cut(s) 606
NciI CCSGG 1 cut(s) 1153
NcoI CCATGG 4 cut(s) 102, 139, 577, 930
NdeI CATATG 1 cut(s) 822
NdeII GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
NgoMIV GCCGGC 1 cut(s) 604
NlaIV GGNNCC 3 cut(s) 575, 609, 695
NmuCI GTSAC 1 cut(s) 806
NspI RCATGY 1 cut(s) 819
NspV TTCGAA 1 cut(s) 209
PagI TCATGA 1 cut(s) 523
PciI ACATGT 1 cut(s) 815
PctI GAATGC 1 cut(s) 538
PdiI GCCGGC 1 cut(s) 606
PfeI GAWTC 2 cut(s) 167, 455
PleI GAGTC 1 cut(s) 1156
PpsI GAGTC 1 cut(s) 1156
PscI ACATGT 1 cut(s) 815
Psp6I CCWGG 1 cut(s) 162
PspEI GGTNACC 1 cut(s) 806
PspFI CCCAGC 1 cut(s) 742
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 3 cut(s) 575, 609, 695
PspPI GGNCC 1 cut(s) 574
PstI CTGCAG 2 cut(s) 264, 692
PstNI CAGNNNCTG 1 cut(s) 464
RsaI GTAC 4 cut(s) 471, 718, 800, 1006
RsaNI GTAC 4 cut(s) 470, 717, 799, 1005
SacII CCGCGG 1 cut(s) 979
SaqAI TTAA 5 cut(s) 51, 131, 782, 867, 1080
Sau3AI GATC 7 cut(s) 286, 330, 385, 499, 615, 775, 859
Sau96I GGNCC 1 cut(s) 574
SchI GAGTC 1 cut(s) 1157
ScrFI CCNGG 2 cut(s) 164, 1153
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 3 cut(s) 325, 422, 1060
SfcI CTRYAG 3 cut(s) 260, 688, 709
Sfr303I CCGCGG 1 cut(s) 979
SfuI TTCGAA 1 cut(s) 209
SgrBI CCGCGG 1 cut(s) 979
SinI GGWCC 1 cut(s) 574
SmlI CTYRAG 1 cut(s) 841
SmoI CTYRAG 1 cut(s) 841
Sse9I AATT 9 cut(s) 53, 132, 364, 585, 593, 736, 864, 1081, 1165
SsiI CCGC 4 cut(s) 896, 951, 976, 978
SspMI CTAG 1 cut(s) 156
StyD4I CCNGG 2 cut(s) 162, 1151
StyI CCWWGG 6 cut(s) 102, 139, 216, 577, 698, 930
TaaI ACNGT 4 cut(s) 124, 514, 601, 1139
TaiI ACGT 3 cut(s) 306, 471, 1044
TaqI TCGA 2 cut(s) 209, 333
TasI AATT 9 cut(s) 53, 132, 364, 585, 593, 736, 864, 1081, 1165
TatI WGTACW 1 cut(s) 798
TauI GCSGC 2 cut(s) 899, 978
TfiI GAWTC 2 cut(s) 167, 455
Tru1I TTAA 5 cut(s) 51, 131, 782, 867, 1080
Tru9I TTAA 5 cut(s) 51, 131, 782, 867, 1080
TscAI CASTG 2 cut(s) 838, 970
TseFI GTSAC 1 cut(s) 806
Tsp45I GTSAC 1 cut(s) 806
TspDTI ATGAA 4 cut(s) 288, 296, 540, 1116
TspGWI ACGGA 1 cut(s) 395
TspRI CASTG 2 cut(s) 838, 970
VpaK11BI GGWCC 1 cut(s) 574
XapI RAATTY 2 cut(s) 53, 585
XceI RCATGY 1 cut(s) 819
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.