MD14G1110500.v1.1

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000335
Physical Location & Seq
Forward (+)
17563897 .. 17565936
2040 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1110500.v1.1.491

Sequence Viewer

Length: 411 bp
ATGGAAGATACTGAGACCTTTGCTTTCCATGCAGCGATCAACCAGCTGCTGAGTCTGGTCATCAACACGTTTGACAGCAACAAGGAGATCTTCCTCCGCGAGCTCATTAGCAATGCCTCGGATGCTCTGGACAAGATCCCCGCAAGCTCAATTCTCAGCCGGAGTTCGTCATTCGAATTGTCCCTGACAAGGCCAACAGGACCCTCTCCATCATCGACACTGATTTGTGGACAATCGCAAAGTCTGGGACAAAGGAGTTTGGAGGCATTGCAGGCAGGGGCATATGTCAGCATGATTGGGCAGTTTGGTGTAGGATTCTACTCTACTTACTTAGTGGCTGAGAGGGTCGTTGTCACAACAAAGCACAATGACTCTGGGAATCTCATGCTAGAGGCTCTTTCACTATCATAA

Protein Analysis

137

Amino Acids

14.62

Weight (kDa)

4.83

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 99
AciI CCGC 2 cut(s) 97, 141
AclWI GGATC 1 cut(s) 130
AfiI CCNNNNNNNGG 1 cut(s) 189
AflIII ACRYGT 1 cut(s) 66
AluBI AGCT 3 cut(s) 46, 103, 147
AluI AGCT 3 cut(s) 46, 103, 147
Alw21I GWGCWC 1 cut(s) 105
Alw26I GTCTC 1 cut(s) 8
AlwI GGATC 1 cut(s) 130
AlwNI CAGNNNCTG 1 cut(s) 49
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 32, 46
AspS9I GGNCC 1 cut(s) 200
AsuII TTCGAA 1 cut(s) 174
AvaII GGWCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 105
BbvI GCAGC 2 cut(s) 33, 44
BccI CCATC 1 cut(s) 217
BcoDI GTCTC 1 cut(s) 8
BfaI CTAG 1 cut(s) 389
BglII AGATCT 1 cut(s) 87
BisI GCNGC 2 cut(s) 33, 47
BlsI GCNGC 2 cut(s) 34, 48
Bme18I GGWCC 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 202
BmsI GCATC 1 cut(s) 112
Bpu14I TTCGAA 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 117
Bsc4I CCNNNNNNNGG 1 cut(s) 189
Bse3DI GCAATG 2 cut(s) 118, 266
BseDI CCNNGG 1 cut(s) 117
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 189
BseMI GCAATG 2 cut(s) 118, 266
BseMII CTCAG 3 cut(s) 41, 169, 330
BseXI GCAGC 2 cut(s) 33, 44
Bsh1236I CGCG 1 cut(s) 99
BshFI GGCC 1 cut(s) 193
BsiHKAI GWGCWC 1 cut(s) 105
BsiSI CCGG 1 cut(s) 160
BslFI GGGAC 2 cut(s) 166, 261
BslI CCNNNNNNNGG 1 cut(s) 189
BsmAI GTCTC 1 cut(s) 8
BsmFI GGGAC 2 cut(s) 166, 261
BsnI GGCC 1 cut(s) 193
Bso31I GGTCTC 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 174
Bsp1286I GDGCHC 1 cut(s) 105
Bsp143I GATC 3 cut(s) 36, 87, 135
BspACI CCGC 2 cut(s) 97, 141
BspANI GGCC 1 cut(s) 193
BspCNI CTCAG 4 cut(s) 4, 42, 168, 331
BspFNI CGCG 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 130
BspT104I TTCGAA 1 cut(s) 174
BspTNI GGTCTC 1 cut(s) 8
BsrDI GCAATG 2 cut(s) 118, 266
BssECI CCNNGG 1 cut(s) 117
BssMI GATC 3 cut(s) 36, 87, 135
BstBI TTCGAA 1 cut(s) 174
BstC8I GCNNGC 3 cut(s) 101, 145, 273
BstDEI CTNAG 5 cut(s) 12, 50, 155, 331, 339
BstF5I GGATG 1 cut(s) 127
BstFNI CGCG 1 cut(s) 99
BstKTI GATC 3 cut(s) 39, 90, 138
BstMAI GTCTC 1 cut(s) 8
BstMBI GATC 3 cut(s) 36, 87, 135
BstMWI GCNNNNNNNGC 3 cut(s) 29, 122, 272
BstUI CGCG 1 cut(s) 99
BstV1I GCAGC 2 cut(s) 33, 44
BstX2I RGATCY 2 cut(s) 87, 135
BstYI RGATCY 2 cut(s) 87, 135
BsuRI GGCC 1 cut(s) 193
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 1 cut(s) 218
Cac8I GCNNGC 3 cut(s) 101, 145, 273
CaiI CAGNNNCTG 1 cut(s) 49
Cfr13I GGNCC 1 cut(s) 200
CviAII CATG 3 cut(s) 29, 292, 385
CviJI RGCY 7 cut(s) 46, 103, 147, 159, 193, 338, 395
CviKI_1 RGCY 7 cut(s) 46, 103, 147, 159, 193, 338, 395
DdeI CTNAG 5 cut(s) 12, 50, 155, 331, 339
DpnI GATC 3 cut(s) 38, 89, 137
DpnII GATC 3 cut(s) 36, 87, 135
Ecl136II GAGCTC 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 105
Eco31I GGTCTC 1 cut(s) 8
Eco47I GGWCC 1 cut(s) 200
Eco53kI GAGCTC 1 cut(s) 103
EcoICRI GAGCTC 1 cut(s) 103
EcoO109I RGGNCCY 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 105
FaeI CATG 3 cut(s) 32, 295, 388
FaiI YATR 6 cut(s) 30, 283, 285, 293, 386, 409
FalI AAGNNNNNCTT 2 cut(s) 74, 106
FaqI GGGAC 2 cut(s) 166, 261
FatI CATG 3 cut(s) 28, 291, 384
FauI CCCGC 1 cut(s) 148
FauNDI CATATG 1 cut(s) 283
Fnu4HI GCNGC 2 cut(s) 33, 47
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 2 cut(s) 33, 47
FspBI CTAG 1 cut(s) 389
GluI GCNGC 2 cut(s) 33, 47
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 160
Hin1II CATG 3 cut(s) 32, 295, 388
HinfI GANTC 4 cut(s) 52, 315, 371, 379
HpaII CCGG 1 cut(s) 160
Hpy166II GTNNAC 1 cut(s) 230
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 128
Hpy8I GTNNAC 1 cut(s) 230
HpyCH4IV ACGT 1 cut(s) 68
HpyCH4V TGCA 2 cut(s) 32, 271
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 122, 272
HpyF3I CTNAG 5 cut(s) 12, 50, 155, 331, 339
HpySE526I ACGT 1 cut(s) 68
Hsp92II CATG 3 cut(s) 32, 295, 388
Kzo9I GATC 3 cut(s) 36, 87, 135
Lsp1109I GCAGC 2 cut(s) 33, 44
LweI GCATC 1 cut(s) 112
MaeI CTAG 1 cut(s) 389
MaeII ACGT 1 cut(s) 68
MaeIII GTNAC 1 cut(s) 352
MalI GATC 3 cut(s) 38, 89, 137
MboI GATC 3 cut(s) 36, 87, 135
MboII GAAGA 2 cut(s) 17, 82
MflI RGATCY 2 cut(s) 87, 135
MhlI GDGCHC 1 cut(s) 105
MluCI AATT 2 cut(s) 150, 176
MlyI GAGTC 2 cut(s) 61, 365
MnlI CCTC 6 cut(s) 104, 127, 214, 256, 336, 385
MspA1I CMGCKG 1 cut(s) 46
MspI CCGG 1 cut(s) 160
MvnI CGCG 1 cut(s) 99
MwoI GCNNNNNNNGC 3 cut(s) 29, 122, 272
NdeI CATATG 1 cut(s) 283
NdeII GATC 3 cut(s) 36, 87, 135
NlaIII CATG 3 cut(s) 32, 295, 388
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 352
NspV TTCGAA 1 cut(s) 174
PfeI GAWTC 2 cut(s) 315, 379
PkrI GCNGC 2 cut(s) 34, 48
PleI GAGTC 2 cut(s) 60, 365
PpsI GAGTC 2 cut(s) 60, 365
PpuMI RGGWCCY 1 cut(s) 200
Psp124BI GAGCTC 1 cut(s) 105
Psp5II RGGWCCY 1 cut(s) 200
PspN4I GGNNCC 1 cut(s) 202
PspPI GGNCC 1 cut(s) 200
PspPPI RGGWCCY 1 cut(s) 200
PstNI CAGNNNCTG 1 cut(s) 49
PsuI RGATCY 2 cut(s) 87, 135
PvuII CAGCTG 1 cut(s) 46
SacI GAGCTC 1 cut(s) 105
SatI GCNGC 2 cut(s) 33, 47
Sau3AI GATC 3 cut(s) 36, 87, 135
Sau96I GGNCC 1 cut(s) 200
SchI GAGTC 2 cut(s) 61, 365
SduI GDGCHC 1 cut(s) 105
SetI ASST 5 cut(s) 20, 48, 71, 105, 149
SfaNI GCATC 1 cut(s) 112
SfuI TTCGAA 1 cut(s) 174
SinI GGWCC 1 cut(s) 200
Sse9I AATT 2 cut(s) 150, 176
SsiI CCGC 2 cut(s) 97, 141
SspMI CTAG 1 cut(s) 389
SstI GAGCTC 1 cut(s) 105
TaiI ACGT 1 cut(s) 71
TaqI TCGA 2 cut(s) 174, 215
TasI AATT 2 cut(s) 150, 176
TfiI GAWTC 2 cut(s) 315, 379
TscAI CASTG 1 cut(s) 225
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 32, 46
Tsp45I GTSAC 1 cut(s) 352
TspRI CASTG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 200
XspI CTAG 1 cut(s) 389
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.