Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

55081106 .. 55083309

Gene Structure 2204 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1374 bp

ATGGTTGAAATTGAGATGGAAGCTGACGTTGAGACCTTCGCATTCCAGGCGGAGATCAACCAGCTTCTGAGTTTGATCATCAACACTTTCTACAGTAACAAAGAGATTTTCCTCCGCGAGCTTATCAGCAATGCCTCTGATGCATTGGACAAGATCCGATTCCAGAGCTTGACTGATCCCAGCAAGCTCGAGTCTCAACCCGAACTATGCATCCGGATCATCCCGGACAAGGTCAACAAAACCCTCACCATCTTCGACACCGGCGCTGGCATGACCAAAGCAGAATTGGTGAACAATCTGGGGACGATTGCGAGGTCCGGGACCAAGGAGTTTATGGAGGCTTTACAGGCCGGGGCTGACGTGAGCATGATCGGGCAGTTCGGCGTGGGATTCTACTCTGCTTATTTGGTGGCTGAGAAGGTCATTGTTCTGACAAAGCACAATGATGATGATCAATATGTGTGGGAGTCTCAGGCTGGTGGGTCTTTTACTGTTACTAGGGATGTTAATGGAGAGCCACTTGGTAGAGGGACCAAGGTGATTTTGTATCTCAAGGAAGACCAGCTCGATTTCTTGGACCAGAAGAAGCTCAAGGAGCTTGTGAAGAAGCATTCCGAGTTTATAAGCTACCCGATTTACCTCTGGGTGGAGAAGACTGTGGAGAAAGAGATTAGTGATGATGAAGATGATGCAGGGGAAGGCAAGAACACGGAAGAGGGGGATTTTGAGGACAAAGACAAGGAAGGGAAACCGAAGAAGAAGAAGGTGAAGGAGGTGTTGAAGGAGTATGATGGGAAGAAGCTTGTGTCCGTAACGAAAGAAGGGCTTCAGCTTGAGGATGAGTCGGAGGAGGAGAAGAGTCAGAGAGAGGAAAAGAAGAAGTCGTTTGAGAAGCTGTGCACGAAGACCAAGGAGATTCTTGGGGATAGGGTGGAGAAGGTGGTGGTTTCTGACAGAGTTGTCGACTCACCTTGTGTCTTGGTGACTGGAGAGTATGGGTGGACAGCTAACATGGAGAGAATTATGAAAGCTCAGGCTTTGAGGGACAACAGCATGGGAGCTTACATGTCTAGCAAGAAGACTATGGAGATTAATCCCGACAATCCTATAGTGGAGGAGCTGAGGAAGAGGGTTGAGACTGATGAGAATGACAAGTCAGTGAAGGACCTTGTGCTGCTGCTCTATGAGACCGCTCTGTTGAGTTCGGGGTTCAGCCTTGATGATCCCAACAGGTTTGCTGGTAGGATACACAGGATGCTGAAACTGGGTCTCAGCATTGATGAAGATGATGACCCTGAACTAGTTGATGATGTCGACATGCCTCCATCCGAGGAGAAGAAGGTTGAGGAAAGCCAGATGGAAGAAGTTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0034622 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051131 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0061077 GO:0065003 GO:0070013 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

458

Amino Acids

51.79

Weight (kDa)

4.65

Isoelectric Point (pI)

33.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	35 - 187	1.2e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	38 - 150	1.7e-07	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	190 - 261	5.8e-15	Hsp90 protein
HSP90	PF00183	260 - 449	2.5e-71	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	623
AasI	GACNNNNNNGTC	1 cut(s)	959
AccBSI	CCGCTC	1 cut(s)	1193
AccI	GTMKAC	2 cut(s)	963, 1314
AccII	CGCG	1 cut(s)	117
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	3 cut(s)	50, 115, 1191
AclWI	GGATC	4 cut(s)	148, 170, 224, 1217
AcuI	CTGAAG	1 cut(s)	812
AdeI	CACNNNGTG	1 cut(s)	974
AfiI	CCNNNNNNNGG	2 cut(s)	229, 646
AflIII	ACRYGT	1 cut(s)	1065
AgsI	TTSAA	2 cut(s)	8, 781
AhlI	ACTAGT	1 cut(s)	1300
AjiI	CACGTC	1 cut(s)	361
AjnI	CCWGG	1 cut(s)	45
AloI	GAACNNNNNNTCC	2 cut(s)	195, 227
Alw21I	GWGCWC	1 cut(s)	902
Alw26I	GTCTC	6 cut(s)	26, 198, 474, 1130, 1181, 1274
Alw44I	GTGCAC	1 cut(s)	898
AlwI	GGATC	4 cut(s)	148, 170, 224, 1217
AlwNI	CAGNNNCTG	1 cut(s)	67
Ama87I	CYCGRG	1 cut(s)	188
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	1 cut(s)	348
ApaLI	GTGCAC	1 cut(s)	898
ApeKI	GCWGC	2 cut(s)	1174, 1177
AseI	ATTAAT	1 cut(s)	1092
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	1 cut(s)	266
AspS9I	GGNCC	5 cut(s)	315, 321, 531, 577, 1165
AsuC2I	CCSGG	3 cut(s)	224, 319, 352
AsuHPI	GGTGA	6 cut(s)	238, 301, 550, 778, 960, 994
AvaI	CYCGRG	1 cut(s)	188
AvaII	GGWCC	5 cut(s)	315, 321, 531, 577, 1165
BaeGI	GKGCMC	1 cut(s)	902
BbsI	GAAGAC	4 cut(s)	564, 659, 911, 1085
Bbv12I	GWGCWC	1 cut(s)	902
BbvCI	CCTCAGC	1 cut(s)	1121
BbvI	GCAGC	2 cut(s)	1161, 1164
BccI	CCATC	5 cut(s)	10, 257, 785, 1333, 1351
BciT130I	CCWGG	1 cut(s)	47
BciVI	GTATCC	1 cut(s)	1239
BclI	TGATCA	2 cut(s)	75, 451
BcnI	CCSGG	3 cut(s)	224, 319, 352
BcoDI	GTCTC	6 cut(s)	26, 198, 474, 1130, 1181, 1274
BcuI	ACTAGT	1 cut(s)	1300
BfaI	CTAG	3 cut(s)	498, 1071, 1301
BfmI	CTRYAG	2 cut(s)	91, 1107
BfoI	RGCGCY	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	1239
BisI	GCNGC	2 cut(s)	1175, 1178
BlsI	GCNGC	2 cut(s)	1176, 1179
Bme1390I	CCNGG	4 cut(s)	47, 224, 319, 352
Bme18I	GGWCC	5 cut(s)	315, 321, 531, 577, 1165
BmeT110I	CYCGRG	1 cut(s)	188
BmgBI	CACGTC	1 cut(s)	361
BmgT120I	GGNCC	5 cut(s)	315, 321, 531, 577, 1165
BmiI	GGNNCC	2 cut(s)	322, 532
BmrFI	CCNGG	4 cut(s)	47, 224, 319, 352
BmrI	ACTGGG	1 cut(s)	1274
BmsI	GCATC	4 cut(s)	130, 219, 679, 1245
BmuI	ACTGGG	1 cut(s)	1274
BpiI	GAAGAC	4 cut(s)	564, 659, 911, 1085
BpmI	CTGGAG	1 cut(s)	1008
Bpu10I	CCTNAGC	2 cut(s)	1032, 1121
BpuEI	CTTGAG	3 cut(s)	536, 575, 854
BpuMI	CCSGG	3 cut(s)	224, 319, 352
BsaBI	GATNNNNATC	1 cut(s)	450
BsaI	GGTCTC	3 cut(s)	26, 1181, 1274
BsaJI	CCNNGG	5 cut(s)	324, 351, 534, 909, 1329
BsaWI	WCCGGW	1 cut(s)	213
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 646
Bse118I	RCCGGY	1 cut(s)	260
Bse1I	ACTGG	2 cut(s)	991, 1269
Bse3DI	GCAATG	1 cut(s)	136
Bse8I	GATNNNNATC	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	213
BseBI	CCWGG	1 cut(s)	47
BseDI	CCNNGG	5 cut(s)	324, 351, 534, 909, 1329
BseGI	GGATG	6 cut(s)	210, 219, 508, 844, 1260, 1325
BseJI	GATNNNNATC	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	229, 646
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	6 cut(s)	59, 405, 485, 1046, 1112, 1285
BseNI	ACTGG	2 cut(s)	991, 1269
BseRI	GAGGAG	4 cut(s)	863, 866, 1130, 1346
BseSI	GKGCMC	1 cut(s)	902
BseXI	GCAGC	2 cut(s)	1161, 1164
BseYI	CCCAGC	1 cut(s)	179
Bsh1236I	CGCG	1 cut(s)	117
BshFI	GGCC	1 cut(s)	350
BsiHKAI	GWGCWC	1 cut(s)	902
BsiHKCI	CYCGRG	1 cut(s)	188
BsiSI	CCGG	5 cut(s)	214, 224, 261, 318, 351
BslFI	GGGAC	4 cut(s)	316, 334, 544, 1058
BslI	CCNNNNNNNGG	2 cut(s)	229, 646
BsmAI	GTCTC	6 cut(s)	26, 198, 474, 1130, 1181, 1274
BsmFI	GGGAC	4 cut(s)	316, 334, 544, 1058
BsmI	GAATGC	2 cut(s)	41, 610
BsnI	GGCC	1 cut(s)	350
Bso31I	GGTCTC	3 cut(s)	26, 1181, 1274
BsoBI	CYCGRG	1 cut(s)	188
Bsp1286I	GDGCHC	1 cut(s)	902
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
BspACI	CCGC	3 cut(s)	50, 115, 1191
BspANI	GGCC	1 cut(s)	350
BspCNI	CTCAG	6 cut(s)	60, 406, 484, 1045, 1113, 1284
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	1 cut(s)	117
BspLI	GGNNCC	2 cut(s)	322, 532
BspPI	GGATC	4 cut(s)	148, 170, 224, 1217
BspTNI	GGTCTC	3 cut(s)	26, 1181, 1274
BsrBI	CCGCTC	1 cut(s)	1193
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	260
BsrI	ACTGG	2 cut(s)	991, 1269
BssAI	RCCGGY	1 cut(s)	260
BssECI	CCNNGG	5 cut(s)	324, 351, 534, 909, 1329
BssMI	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
BssT1I	CCWWGG	3 cut(s)	324, 534, 909
Bst2UI	CCWGG	1 cut(s)	47
Bst4CI	ACNGT	3 cut(s)	95, 493, 658
Bst6I	CTCTTC	3 cut(s)	708, 851, 1121
BstC8I	GCNNGC	3 cut(s)	119, 185, 268
BstDEI	CTNAG	6 cut(s)	68, 414, 471, 1032, 1121, 1271
BstF5I	GGATG	6 cut(s)	210, 219, 508, 844, 1260, 1325
BstFNI	CGCG	1 cut(s)	117
BstH2I	RGCGCY	1 cut(s)	267
BstHHI	GCGC	1 cut(s)	266
BstKTI	GATC	8 cut(s)	57, 78, 156, 178, 219, 372, 454, 1225
BstMAI	GTCTC	6 cut(s)	26, 198, 474, 1130, 1181, 1274
BstMBI	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
BstMWI	GCNNNNNNNGC	4 cut(s)	47, 140, 347, 595
BstNI	CCWGG	1 cut(s)	47
BstNSI	RCATGY	2 cut(s)	1069, 1321
BstSCI	CCNGG	4 cut(s)	45, 222, 317, 350
BstSFI	CTRYAG	2 cut(s)	91, 1107
BstSLI	GKGCMC	1 cut(s)	902
BstUI	CGCG	1 cut(s)	117
BstV1I	GCAGC	2 cut(s)	1161, 1164
BstV2I	GAAGAC	4 cut(s)	564, 659, 911, 1085
BstX2I	RGATCY	1 cut(s)	153
BstYI	RGATCY	1 cut(s)	153
BsuI	GTATCC	1 cut(s)	1239
BsuRI	GGCC	1 cut(s)	350
BtrI	CACGTC	1 cut(s)	361
BtsCI	GGATG	6 cut(s)	210, 219, 508, 844, 1260, 1325
BtsIMutI	CAGTG	1 cut(s)	1164
Cac8I	GCNNGC	3 cut(s)	119, 185, 268
CaiI	CAGNNNCTG	1 cut(s)	67
CfoI	GCGC	1 cut(s)	266
Cfr10I	RCCGGY	1 cut(s)	260
Cfr13I	GGNCC	5 cut(s)	315, 321, 531, 577, 1165
CspCI	CAANNNNNGTGG	2 cut(s)	443, 478
CviAII	CATG	6 cut(s)	271, 367, 1012, 1054, 1066, 1318
DdeI	CTNAG	6 cut(s)	68, 414, 471, 1032, 1121, 1271
DpnI	GATC	8 cut(s)	56, 77, 155, 177, 218, 371, 453, 1224
DpnII	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
DraIII	CACNNNGTG	1 cut(s)	974
DrdI	GACNNNNNNGTC	1 cut(s)	959
DseDI	GACNNNNNNGTC	1 cut(s)	959
Eam1104I	CTCTTC	3 cut(s)	708, 851, 1121
EarI	CTCTTC	3 cut(s)	708, 851, 1121
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	3 cut(s)	324, 534, 909
Eco31I	GGTCTC	3 cut(s)	26, 1181, 1274
Eco47I	GGWCC	5 cut(s)	315, 321, 531, 577, 1165
Eco57I	CTGAAG	1 cut(s)	812
Eco88I	CYCGRG	1 cut(s)	188
EcoO109I	RGGNCCY	1 cut(s)	1165
EcoRII	CCWGG	1 cut(s)	45
EcoT14I	CCWWGG	3 cut(s)	324, 534, 909
EcoT22I	ATGCAT	2 cut(s)	145, 212
ErhI	CCWWGG	3 cut(s)	324, 534, 909
FaeI	CATG	6 cut(s)	274, 370, 1015, 1057, 1069, 1321
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	4 cut(s)	316, 334, 544, 1058
FatI	CATG	6 cut(s)	270, 366, 1011, 1053, 1065, 1317
FbaI	TGATCA	2 cut(s)	75, 451
FblI	GTMKAC	2 cut(s)	963, 1314
Fnu4HI	GCNGC	2 cut(s)	1175, 1178
FokI	GGATG	6 cut(s)	197, 206, 515, 851, 1267, 1312
Fsp4HI	GCNGC	2 cut(s)	1175, 1178
FspBI	CTAG	3 cut(s)	498, 1071, 1301
GlaI	GCGC	1 cut(s)	265
GluI	GCNGC	2 cut(s)	1175, 1178
GsaI	CCCAGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	1008
HaeII	RGCGCY	1 cut(s)	267
HaeIII	GGCC	1 cut(s)	350
HapII	CCGG	5 cut(s)	214, 224, 261, 318, 351
HhaI	GCGC	1 cut(s)	266
Hin1II	CATG	6 cut(s)	274, 370, 1015, 1057, 1069, 1321
Hin6I	GCGC	1 cut(s)	264
HinP1I	GCGC	1 cut(s)	264
HincII	GTYRAC	4 cut(s)	235, 964, 1315, 1369
HindII	GTYRAC	4 cut(s)	235, 964, 1315, 1369
HindIII	AAGCTT	1 cut(s)	800
HinfI	GANTC	8 cut(s)	159, 191, 390, 467, 842, 859, 916, 965
HpaII	CCGG	5 cut(s)	214, 224, 261, 318, 351
HphI	GGTGA	6 cut(s)	238, 301, 550, 778, 960, 994
Hpy166II	GTNNAC	7 cut(s)	235, 292, 900, 964, 1002, 1315, 1369
Hpy188I	TCNGA	9 cut(s)	69, 139, 158, 432, 616, 847, 864, 952, 1330
Hpy188III	TCNNGA	3 cut(s)	163, 214, 1097
Hpy8I	GTNNAC	7 cut(s)	235, 292, 900, 964, 1002, 1315, 1369
HpyCH4III	ACNGT	3 cut(s)	95, 493, 658
HpyCH4IV	ACGT	2 cut(s)	27, 360
HpyCH4V	TGCA	4 cut(s)	143, 210, 692, 900
HpyF10VI	GCNNNNNNNGC	4 cut(s)	47, 140, 347, 595
HpyF3I	CTNAG	6 cut(s)	68, 414, 471, 1032, 1121, 1271
HpySE526I	ACGT	2 cut(s)	27, 360
Hsp92II	CATG	6 cut(s)	274, 370, 1015, 1057, 1069, 1321
HspAI	GCGC	1 cut(s)	264
Kpn2I	TCCGGA	1 cut(s)	213
Ksp22I	TGATCA	2 cut(s)	75, 451
Kzo9I	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
LmnI	GCTCC	3 cut(s)	595, 1058, 1117
Lsp1109I	GCAGC	2 cut(s)	1161, 1164
LweI	GCATC	4 cut(s)	130, 219, 679, 1245
MaeI	CTAG	3 cut(s)	498, 1071, 1301
MaeII	ACGT	2 cut(s)	27, 360
MaeIII	GTNAC	4 cut(s)	95, 493, 811, 982
MalI	GATC	8 cut(s)	56, 77, 155, 177, 218, 371, 453, 1224
MbiI	CCGCTC	1 cut(s)	1193
MboI	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
MflI	RGATCY	1 cut(s)	153
MhlI	GDGCHC	1 cut(s)	902
MluCI	AATT	3 cut(s)	9, 284, 1020
MlyI	GAGTC	5 cut(s)	200, 476, 851, 868, 959
MmeI	TCCRAC	1 cut(s)	825
Mph1103I	ATGCAT	2 cut(s)	145, 212
MroI	TCCGGA	1 cut(s)	213
MroXI	GAANNNNTTC	1 cut(s)	825
MseI	TTAA	2 cut(s)	507, 1092
MslI	CAYNNNNRTG	1 cut(s)	444
MspI	CCGG	5 cut(s)	214, 224, 261, 318, 351
MspR9I	CCNGG	4 cut(s)	47, 224, 319, 352
Mva1269I	GAATGC	2 cut(s)	41, 610
MvaI	CCWGG	1 cut(s)	47
MvnI	CGCG	1 cut(s)	117
MwoI	GCNNNNNNNGC	4 cut(s)	47, 140, 347, 595
NciI	CCSGG	3 cut(s)	224, 319, 352
NdeII	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
NlaIII	CATG	6 cut(s)	274, 370, 1015, 1057, 1069, 1321
NlaIV	GGNNCC	2 cut(s)	322, 532
NmuCI	GTSAC	1 cut(s)	982
NsiI	ATGCAT	2 cut(s)	145, 212
NspI	RCATGY	2 cut(s)	1069, 1321
PaeR7I	CTCGAG	1 cut(s)	188
PciI	ACATGT	1 cut(s)	1065
PctI	GAATGC	2 cut(s)	41, 610
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	3 cut(s)	159, 390, 916
PflFI	GACNNNGTC	1 cut(s)	230
PfoI	TCCNGGA	2 cut(s)	222, 317
PkrI	GCNGC	2 cut(s)	1176, 1179
PleI	GAGTC	5 cut(s)	199, 475, 850, 867, 959
PpsI	GAGTC	5 cut(s)	199, 475, 850, 867, 959
PpuMI	RGGWCCY	1 cut(s)	1165
PscI	ACATGT	1 cut(s)	1065
PshBI	ATTAAT	1 cut(s)	1092
PsiI	TTATAA	1 cut(s)	623
Psp5II	RGGWCCY	1 cut(s)	1165
Psp6I	CCWGG	1 cut(s)	45
PspFI	CCCAGC	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	45
PspN4I	GGNNCC	2 cut(s)	322, 532
PspPI	GGNCC	5 cut(s)	315, 321, 531, 577, 1165
PspPPI	RGGWCCY	1 cut(s)	1165
PspXI	VCTCGAGB	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	67
PsuI	RGATCY	1 cut(s)	153
PsyI	GACNNNGTC	1 cut(s)	230
RseI	CAYNNNNRTG	1 cut(s)	444
SalI	GTCGAC	2 cut(s)	962, 1313
SaqAI	TTAA	2 cut(s)	507, 1092
SatI	GCNGC	2 cut(s)	1175, 1178
Sau3AI	GATC	8 cut(s)	54, 75, 153, 175, 216, 369, 451, 1222
Sau96I	GGNCC	5 cut(s)	315, 321, 531, 577, 1165
SchI	GAGTC	5 cut(s)	200, 476, 851, 868, 959
ScrFI	CCNGG	4 cut(s)	47, 224, 319, 352
SduI	GDGCHC	1 cut(s)	902
SfaNI	GCATC	4 cut(s)	130, 219, 679, 1245
SfcI	CTRYAG	2 cut(s)	91, 1107
Sfr274I	CTCGAG	1 cut(s)	188
SgrAI	CRCCGGYG	1 cut(s)	260
SinI	GGWCC	5 cut(s)	315, 321, 531, 577, 1165
SlaI	CTCGAG	1 cut(s)	188
SmiMI	CAYNNNNRTG	1 cut(s)	444
SmlI	CTYRAG	4 cut(s)	188, 551, 590, 833
SmoI	CTYRAG	4 cut(s)	188, 551, 590, 833
SpeI	ACTAGT	1 cut(s)	1300
Sse9I	AATT	3 cut(s)	9, 284, 1020
SsiI	CCGC	3 cut(s)	50, 115, 1191
SspMI	CTAG	3 cut(s)	498, 1071, 1301
StyD4I	CCNGG	4 cut(s)	45, 222, 317, 350
StyI	CCWWGG	3 cut(s)	324, 534, 909
TaaI	ACNGT	3 cut(s)	95, 493, 658
TaiI	ACGT	2 cut(s)	30, 363
TaqI	TCGA	5 cut(s)	189, 255, 567, 963, 1314
TasI	AATT	3 cut(s)	9, 284, 1020
TfiI	GAWTC	3 cut(s)	159, 390, 916
Tru1I	TTAA	2 cut(s)	507, 1092
Tru9I	TTAA	2 cut(s)	507, 1092
TscAI	CASTG	1 cut(s)	1164
TseFI	GTSAC	1 cut(s)	982
TseI	GCWGC	2 cut(s)	1174, 1177
Tsp45I	GTSAC	1 cut(s)	982
TspDTI	ATGAA	3 cut(s)	696, 1040, 1296
TspGWI	ACGGA	2 cut(s)	725, 799
TspRI	CASTG	1 cut(s)	1164
Tth111I	GACNNNGTC	1 cut(s)	230
VneI	GTGCAC	1 cut(s)	898
VpaK11BI	GGWCC	5 cut(s)	315, 321, 531, 577, 1165
VspI	ATTAAT	1 cut(s)	1092
XceI	RCATGY	2 cut(s)	1069, 1321
XcmI	CCANNNNNNNNNTGG	2 cut(s)	283, 331
XhoI	CTCGAG	1 cut(s)	188
XmiI	GTMKAC	2 cut(s)	963, 1314
XmnI	GAANNNNTTC	1 cut(s)	825
XspI	CTAG	3 cut(s)	498, 1071, 1301
Zsp2I	ATGCAT	2 cut(s)	145, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.