Rh1AG438300

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
Physical Location & Seq
Reverse (-)
66181097 .. 66182150
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG438300.1

Sequence Viewer

Length: 558 bp
ATGGCTGATGTTTACATTGGTGATGATGCTGAGACATTCGCATTCCACGTAGAGATCAACCAGCTTCTTAGCTTGATCATCAGTACCTTTTACAGCAACAAAGAAATTTTCCTTGGCCAACTTATCAACAATTCCAATGATGCCTTGGACAAAATTAGAGTCGAGAGCCTTGCAGATAAGAGCAAGCTTGATGCTCAACCGGAGCTTTTCATCAGGCTCGTTCCTGATAAGACCAACAATACCCTCTCCATCATTGATAGCGGTATCGGCATGACCAAAGCAGATTTGGTGAACAACTTGGGTACACGGTCGGGGACCAAGGAGTTTATGGAGGCACTGGCATCCGGAGCGTCTGATGTGAGCATGACTGGAAAGTTTGGTTTTGGTTTTTACTCAGCATATCTTGTTGCGGAGAAGGTCATTGTGACTACAAAGCACAATGACGATGAACAATACATTTGGGAATCCCATGCTGGTGGTTCCTTCACCGTGACTAGGGATGTCAATGGTGAGCAGCTAGGAAGGGGAAACAAGATTACCCTCTTTCTCAAGGAGTAG

Protein Analysis

185

Amino Acids

20.37

Weight (kDa)

4.81

Isoelectric Point (pI)

18.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c PF02518 35 - 184 4.5e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3 PF13589 41 - 151 7.6e-09 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 344
AciI CCGC 2 cut(s) 261, 410
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 105
AfaI GTAC 2 cut(s) 85, 304
AfiI CCNNNNNNNGG 1 cut(s) 495
AjuI GAANNNNNNNTTGG 2 cut(s) 96, 128
AluBI AGCT 5 cut(s) 64, 72, 187, 205, 517
AluI AGCT 5 cut(s) 64, 72, 187, 205, 517
Alw26I GTCTC 1 cut(s) 26
Aor13HI TCCGGA 1 cut(s) 344
AoxI GGCC 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 514
ApoI RAATTY 1 cut(s) 105
ArsI GACNNNNNNTTYG 2 cut(s) 144, 176
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 4 cut(s) 32, 301, 478, 521
AvaII GGWCC 1 cut(s) 315
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 526
BccI CCATC 1 cut(s) 257
BcgI CGANNNNNNTGC 2 cut(s) 152, 186
BclI TGATCA 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 2 cut(s) 495, 518
BisI GCNGC 1 cut(s) 515
BlsI GCNGC 1 cut(s) 516
Bme18I GGWCC 1 cut(s) 315
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 2 cut(s) 316, 481
BmsI GCATC 4 cut(s) 16, 130, 181, 350
BpuEI CTTGAG 1 cut(s) 533
BsaAI YACGTR 1 cut(s) 49
BsaJI CCNNGG 3 cut(s) 112, 144, 318
BsaWI WCCGGW 2 cut(s) 199, 344
Bsc4I CCNNNNNNNGG 1 cut(s) 495
Bse1I ACTGG 2 cut(s) 342, 373
BseAI TCCGGA 1 cut(s) 344
BseDI CCNNGG 3 cut(s) 112, 144, 318
BseGI GGATG 2 cut(s) 341, 505
BseLI CCNNNNNNNGG 1 cut(s) 495
BseMII CTCAG 2 cut(s) 21, 408
BseNI ACTGG 2 cut(s) 342, 373
BseXI GCAGC 1 cut(s) 526
Bsh1285I CGRYCG 1 cut(s) 311
BshFI GGCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 311
BsiSI CCGG 2 cut(s) 200, 345
BslFI GGGAC 1 cut(s) 328
BslI CCNNNNNNNGG 1 cut(s) 495
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 328
BsmI GAATGC 1 cut(s) 41
BsnI GGCC 1 cut(s) 117
Bsp13I TCCGGA 1 cut(s) 344
Bsp143I GATC 2 cut(s) 54, 75
BspACI CCGC 2 cut(s) 261, 410
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 2 cut(s) 22, 407
BspEI TCCGGA 1 cut(s) 344
BspLI GGNNCC 2 cut(s) 316, 481
BsrI ACTGG 2 cut(s) 342, 373
BssECI CCNNGG 3 cut(s) 112, 144, 318
BssMI GATC 2 cut(s) 54, 75
BssT1I CCWWGG 3 cut(s) 112, 144, 318
Bst4CI ACNGT 2 cut(s) 309, 490
BstBAI YACGTR 1 cut(s) 49
BstC8I GCNNGC 1 cut(s) 185
BstDEI CTNAG 3 cut(s) 30, 68, 394
BstF5I GGATG 2 cut(s) 341, 505
BstKTI GATC 2 cut(s) 57, 78
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 54, 75
BstMCI CGRYCG 1 cut(s) 311
BstMWI GCNNNNNNNGC 2 cut(s) 267, 347
BstV1I GCAGC 1 cut(s) 526
BstXI CCANNNNNNTGG 1 cut(s) 476
BsuRI GGCC 1 cut(s) 117
BtsCI GGATG 2 cut(s) 341, 505
BtsIMutI CAGTG 1 cut(s) 335
Cac8I GCNNGC 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 315
CseI GACGC 1 cut(s) 339
Csp6I GTAC 2 cut(s) 84, 303
CviAII CATG 3 cut(s) 271, 364, 470
CviJI RGCY 9 cut(s) 5, 64, 72, 117, 168, 187, 205, 217, 517
CviKI_1 RGCY 9 cut(s) 5, 64, 72, 117, 168, 187, 205, 217, 517
CviQI GTAC 2 cut(s) 84, 303
DdeI CTNAG 3 cut(s) 30, 68, 394
DpnI GATC 2 cut(s) 56, 77
DpnII GATC 2 cut(s) 54, 75
EaeI YGGCCR 1 cut(s) 115
Eco130I CCWWGG 3 cut(s) 112, 144, 318
Eco47I GGWCC 1 cut(s) 315
EcoT14I CCWWGG 3 cut(s) 112, 144, 318
ErhI CCWWGG 3 cut(s) 112, 144, 318
FaeI CATG 3 cut(s) 274, 367, 473
FaiI YATR 5 cut(s) 272, 329, 365, 400, 471
FaqI GGGAC 1 cut(s) 328
FatI CATG 3 cut(s) 270, 363, 469
FbaI TGATCA 1 cut(s) 75
Fnu4HI GCNGC 1 cut(s) 515
FokI GGATG 2 cut(s) 328, 512
Fsp4HI GCNGC 1 cut(s) 515
FspBI CTAG 2 cut(s) 495, 518
GluI GCNGC 1 cut(s) 515
HaeIII GGCC 1 cut(s) 117
HapII CCGG 2 cut(s) 200, 345
HgaI GACGC 1 cut(s) 339
Hin1II CATG 3 cut(s) 274, 367, 473
HindIII AAGCTT 1 cut(s) 185
HinfI GANTC 2 cut(s) 159, 464
HpaII CCGG 2 cut(s) 200, 345
HphI GGTGA 4 cut(s) 32, 301, 478, 521
Hpy166II GTNNAC 3 cut(s) 13, 292, 305
Hpy188I TCNGA 1 cut(s) 355
Hpy188III TCNNGA 3 cut(s) 163, 224, 345
Hpy8I GTNNAC 3 cut(s) 13, 292, 305
HpyAV CCTTC 3 cut(s) 409, 493, 516
HpyCH4III ACNGT 2 cut(s) 309, 490
HpyCH4IV ACGT 1 cut(s) 48
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 267, 347
HpyF3I CTNAG 3 cut(s) 30, 68, 394
HpySE526I ACGT 1 cut(s) 48
Hsp92II CATG 3 cut(s) 274, 367, 473
Kpn2I TCCGGA 1 cut(s) 344
Ksp22I TGATCA 1 cut(s) 75
Kzo9I GATC 2 cut(s) 54, 75
LmnI GCTCC 2 cut(s) 202, 347
LpnPI CCDG 8 cut(s) 74, 199, 213, 237, 323, 354, 358, 459
Lsp1109I GCAGC 1 cut(s) 526
LweI GCATC 4 cut(s) 16, 130, 181, 350
MaeI CTAG 2 cut(s) 495, 518
MaeII ACGT 1 cut(s) 48
MaeIII GTNAC 2 cut(s) 424, 490
MalI GATC 2 cut(s) 56, 77
MboI GATC 2 cut(s) 54, 75
MlsI TGGCCA 1 cut(s) 117
MluCI AATT 3 cut(s) 105, 130, 153
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 1 cut(s) 168
MnlI CCTC 3 cut(s) 254, 325, 551
Mox20I TGGCCA 1 cut(s) 117
MroI TCCGGA 1 cut(s) 344
MscI TGGCCA 1 cut(s) 117
MslI CAYNNNNRTG 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 2 cut(s) 200, 345
Mva1269I GAATGC 1 cut(s) 41
MwoI GCNNNNNNNGC 2 cut(s) 267, 347
NdeII GATC 2 cut(s) 54, 75
NlaIII CATG 3 cut(s) 274, 367, 473
NlaIV GGNNCC 2 cut(s) 316, 481
NmuCI GTSAC 2 cut(s) 424, 490
PcsI WCGNNNNNNNCGW 1 cut(s) 45
PctI GAATGC 1 cut(s) 41
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 1 cut(s) 516
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
Ppu21I YACGTR 1 cut(s) 49
PspN4I GGNNCC 2 cut(s) 316, 481
PspPI GGNCC 1 cut(s) 315
RsaI GTAC 2 cut(s) 85, 304
RsaNI GTAC 2 cut(s) 84, 303
RseI CAYNNNNRTG 1 cut(s) 474
SatI GCNGC 1 cut(s) 515
Sau3AI GATC 2 cut(s) 54, 75
Sau96I GGNCC 1 cut(s) 315
SchI GAGTC 1 cut(s) 168
SetI ASST 8 cut(s) 51, 66, 74, 89, 189, 207, 420, 519
SfaNI GCATC 4 cut(s) 16, 130, 181, 350
SinI GGWCC 1 cut(s) 315
SmiMI CAYNNNNRTG 1 cut(s) 474
SmlI CTYRAG 1 cut(s) 548
SmoI CTYRAG 1 cut(s) 548
Sse9I AATT 3 cut(s) 105, 130, 153
SsiI CCGC 2 cut(s) 261, 410
SspMI CTAG 2 cut(s) 495, 518
StyI CCWWGG 3 cut(s) 112, 144, 318
TaaI ACNGT 2 cut(s) 309, 490
TaiI ACGT 1 cut(s) 51
TaqI TCGA 1 cut(s) 162
TasI AATT 3 cut(s) 105, 130, 153
TfiI GAWTC 1 cut(s) 464
TscAI CASTG 1 cut(s) 342
TseFI GTSAC 2 cut(s) 424, 490
TseI GCWGC 1 cut(s) 514
Tsp45I GTSAC 2 cut(s) 424, 490
TspDTI ATGAA 2 cut(s) 199, 462
TspRI CASTG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 315
XapI RAATTY 1 cut(s) 105
XcmI CCANNNNNNNNNTGG 3 cut(s) 142, 283, 325
XspI CTAG 2 cut(s) 495, 518
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.