Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

65690673 .. 65692002

Gene Structure 1330 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60302

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGCTTCAAAAAGTTGCAACTAAAGGCACTCGTTTTGCCTTGGACAAAATTAGAGTCGAGAGCCTTACAGATAAGAACAAGCTTGATGCTCAACCGGAGCTTTTCATCAGGCTCGTCCCTGATAAGACCAACAATACCCTCTCCATCATTGATAGCGGTATCGGCATGACCAAAGCTGATTTGGTGAACAACTTGGGTACAAGGTCGGGGACCAAGGAGTTAATGGAGGCATTGGCATCCGGAGCGTCTGATGTGAGCATGATTGGAAAGTTTGGTGTTGGCTTTTACTCGGCATATCTTGTTGCGGAGAAGGTCATTGTGACTACAAAGCACAATGACGATGAACAATACATTTGGGAATCCCATGCTGGTGGTTCCTTCACCGTGACGAGGGATGTCAATGGTGAGCAGCTTGGAAGGGGAAACAAGATTACCCTCTTTCTCAAGGAGGACCAGTTGGAATACTTGGAAGAGATGAGGATCAAAGACCTTGTGAAGAAGCATTCCGAATTCATCAGCTATCCCATCTACTTGTGGATTGAGGTCGAGGAAGCCAAGAAGGAAGAGGAAGGAGCTAGTGGGGAAAAACCCATCTGGCTGCGCAAGCCGGAGGAGATTACAAAGGATGAGTCTGCTTTATTCTACAAGAGCTTGACCTATGATTGGGAGGACTACCTTGCAGTGAAGCATTTCTCTGTTGAAGGCCAGCTGACTTCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

240

Amino Acids

27.13

Weight (kDa)

5.13

Isoelectric Point (pI)

30.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HATPase_c	PF02518	31 - 151	7.7e-06	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HATPase_c_3	PF13589	38 - 116	1.7e-08	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90	PF00183	154 - 190	3.7e-09	Hsp90 protein
HSP90	PF00183	182 - 238	1.9e-15	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	602
AccIII	TCCGGA	1 cut(s)	239
AciI	CCGC	2 cut(s)	156, 305
AclWI	GGATC	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	509
AfaI	GTAC	1 cut(s)	199
AfiI	CCNNNNNNNGG	2 cut(s)	390, 663
AgsI	TTSAA	2 cut(s)	8, 701
AluBI	AGCT	8 cut(s)	82, 100, 176, 412, 519, 575, 651, 709
AluI	AGCT	8 cut(s)	82, 100, 176, 412, 519, 575, 651, 709
AlwI	GGATC	1 cut(s)	488
Aor13HI	TCCGGA	1 cut(s)	239
AoxI	GGCC	1 cut(s)	703
ApeKI	GCWGC	2 cut(s)	409, 598
ApoI	RAATTY	1 cut(s)	509
ArsI	GACNNNNNNTTYG	4 cut(s)	39, 71, 614, 646
Asp700I	GAANNNNTTC	1 cut(s)	689
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	2 cut(s)	210, 451
AsuHPI	GGTGA	3 cut(s)	196, 373, 416
AvaII	GGWCC	2 cut(s)	210, 451
BbvI	GCAGC	2 cut(s)	421, 585
BccI	CCATC	3 cut(s)	152, 533, 599
BfaI	CTAG	2 cut(s)	576, 717
BisI	GCNGC	2 cut(s)	410, 599
BlsI	GCNGC	2 cut(s)	411, 600
Bme18I	GGWCC	2 cut(s)	210, 451
BmgT120I	GGNCC	2 cut(s)	210, 451
BmiI	GGNNCC	2 cut(s)	211, 376
BmsI	GCATC	2 cut(s)	76, 245
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	1 cut(s)	479
BsaJI	CCNNGG	2 cut(s)	39, 213
BsaWI	WCCGGW	2 cut(s)	94, 239
BsaXI	ACNNNNNCTCC	2 cut(s)	440, 470
Bsc4I	CCNNNNNNNGG	2 cut(s)	390, 663
Bse1I	ACTGG	1 cut(s)	454
Bse8I	GATNNNNATC	1 cut(s)	479
BseAI	TCCGGA	1 cut(s)	239
BseDI	CCNNGG	2 cut(s)	39, 213
BseGI	GGATG	3 cut(s)	236, 400, 631
BseJI	GATNNNNATC	1 cut(s)	479
BseLI	CCNNNNNNNGG	2 cut(s)	390, 663
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	626
BseXI	GCAGC	2 cut(s)	421, 585
BshFI	GGCC	1 cut(s)	705
BsiSI	CCGG	3 cut(s)	95, 240, 608
BslFI	GGGAC	2 cut(s)	101, 223
BslI	CCNNNNNNNGG	2 cut(s)	390, 663
BsmFI	GGGAC	2 cut(s)	101, 223
BsmI	GAATGC	1 cut(s)	502
BsnI	GGCC	1 cut(s)	705
Bsp13I	TCCGGA	1 cut(s)	239
Bsp143I	GATC	1 cut(s)	480
BspACI	CCGC	2 cut(s)	156, 305
BspANI	GGCC	1 cut(s)	705
BspEI	TCCGGA	1 cut(s)	239
BspLI	GGNNCC	2 cut(s)	211, 376
BspPI	GGATC	1 cut(s)	488
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	39, 213
BssMI	GATC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	39, 213
Bst4CI	ACNGT	1 cut(s)	385
Bst6I	CTCTTC	2 cut(s)	465, 558
BstC8I	GCNNGC	2 cut(s)	605, 707
BstF5I	GGATG	3 cut(s)	236, 400, 631
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	1 cut(s)	483
BstMBI	GATC	1 cut(s)	480
BstMWI	GCNNNNNNNGC	3 cut(s)	162, 242, 604
BstV1I	GCAGC	2 cut(s)	421, 585
BstXI	CCANNNNNNTGG	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	705
BtsCI	GGATG	3 cut(s)	236, 400, 631
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	2 cut(s)	605, 707
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	2 cut(s)	210, 451
CseI	GACGC	1 cut(s)	234
Csp6I	GTAC	1 cut(s)	198
CviAII	CATG	3 cut(s)	166, 259, 365
CviQI	GTAC	1 cut(s)	198
DpnI	GATC	1 cut(s)	482
DpnII	GATC	1 cut(s)	480
Eam1104I	CTCTTC	2 cut(s)	465, 558
EarI	CTCTTC	2 cut(s)	465, 558
Eco130I	CCWWGG	2 cut(s)	39, 213
Eco47I	GGWCC	2 cut(s)	210, 451
EcoRI	GAATTC	1 cut(s)	509
EcoT14I	CCWWGG	2 cut(s)	39, 213
ErhI	CCWWGG	2 cut(s)	39, 213
FaeI	CATG	3 cut(s)	169, 262, 368
FaiI	YATR	5 cut(s)	167, 260, 295, 366, 660
FaqI	GGGAC	2 cut(s)	101, 223
FatI	CATG	3 cut(s)	165, 258, 364
Fnu4HI	GCNGC	2 cut(s)	410, 599
FokI	GGATG	3 cut(s)	223, 407, 638
Fsp4HI	GCNGC	2 cut(s)	410, 599
FspBI	CTAG	2 cut(s)	576, 717
FspI	TGCGCA	1 cut(s)	602
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	2 cut(s)	410, 599
HaeIII	GGCC	1 cut(s)	705
HapII	CCGG	3 cut(s)	95, 240, 608
HgaI	GACGC	1 cut(s)	234
HhaI	GCGC	1 cut(s)	603
Hin1II	CATG	3 cut(s)	169, 262, 368
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HindIII	AAGCTT	1 cut(s)	80
HinfI	GANTC	3 cut(s)	54, 359, 629
HpaII	CCGG	3 cut(s)	95, 240, 608
HphI	GGTGA	3 cut(s)	196, 373, 416
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	250, 508
Hpy188III	TCNNGA	2 cut(s)	58, 240
Hpy8I	GTNNAC	1 cut(s)	187
HpyAV	CCTTC	6 cut(s)	304, 388, 411, 553, 563, 695
HpyCH4III	ACNGT	1 cut(s)	385
HpyCH4V	TGCA	2 cut(s)	17, 680
HpyF10VI	GCNNNNNNNGC	3 cut(s)	162, 242, 604
Hsp92II	CATG	3 cut(s)	169, 262, 368
HspAI	GCGC	1 cut(s)	601
Kpn2I	TCCGGA	1 cut(s)	239
Kzo9I	GATC	1 cut(s)	480
LmnI	GCTCC	3 cut(s)	97, 242, 572
LpnPI	CCDG	9 cut(s)	94, 108, 132, 253, 354, 467, 580, 621, 719
Lsp1109I	GCAGC	2 cut(s)	421, 585
LweI	GCATC	2 cut(s)	76, 245
MaeI	CTAG	2 cut(s)	576, 717
MaeIII	GTNAC	2 cut(s)	319, 385
MalI	GATC	1 cut(s)	482
MboI	GATC	1 cut(s)	480
MboII	GAAGA	3 cut(s)	482, 508, 575
MluCI	AATT	2 cut(s)	48, 509
MlyI	GAGTC	2 cut(s)	63, 638
MmeI	TCCRAC	1 cut(s)	438
MroI	TCCGGA	1 cut(s)	239
MroXI	GAANNNNTTC	1 cut(s)	689
MseI	TTAA	1 cut(s)	221
MslI	CAYNNNNRTG	1 cut(s)	369
MspA1I	CMGCKG	1 cut(s)	709
MspI	CCGG	3 cut(s)	95, 240, 608
Mva1269I	GAATGC	1 cut(s)	502
MwoI	GCNNNNNNNGC	3 cut(s)	162, 242, 604
NdeII	GATC	1 cut(s)	480
NlaIII	CATG	3 cut(s)	169, 262, 368
NlaIV	GGNNCC	2 cut(s)	211, 376
NmeAIII	GCCGAG	1 cut(s)	269
NmuCI	GTSAC	2 cut(s)	319, 385
NsbI	TGCGCA	1 cut(s)	602
PctI	GAATGC	1 cut(s)	502
PdmI	GAANNNNTTC	1 cut(s)	689
PfeI	GAWTC	1 cut(s)	359
PkrI	GCNGC	2 cut(s)	411, 600
PleI	GAGTC	2 cut(s)	62, 637
PpsI	GAGTC	2 cut(s)	62, 637
PspN4I	GGNNCC	2 cut(s)	211, 376
PspPI	GGNCC	2 cut(s)	210, 451
PvuII	CAGCTG	1 cut(s)	709
RsaI	GTAC	1 cut(s)	199
RsaNI	GTAC	1 cut(s)	198
RseI	CAYNNNNRTG	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	410, 599
Sau3AI	GATC	1 cut(s)	480
Sau96I	GGNCC	2 cut(s)	210, 451
SchI	GAGTC	2 cut(s)	63, 638
SfaNI	GCATC	2 cut(s)	76, 245
SinI	GGWCC	2 cut(s)	210, 451
SmiMI	CAYNNNNRTG	1 cut(s)	369
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	2 cut(s)	48, 509
SsiI	CCGC	2 cut(s)	156, 305
SspMI	CTAG	2 cut(s)	576, 717
StyI	CCWWGG	2 cut(s)	39, 213
TaaI	ACNGT	1 cut(s)	385
TaqI	TCGA	2 cut(s)	57, 546
TasI	AATT	2 cut(s)	48, 509
TfiI	GAWTC	1 cut(s)	359
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	687
TseFI	GTSAC	2 cut(s)	319, 385
TseI	GCWGC	2 cut(s)	409, 598
Tsp45I	GTSAC	2 cut(s)	319, 385
TspDTI	ATGAA	3 cut(s)	94, 357, 502
TspRI	CASTG	1 cut(s)	687
VpaK11BI	GGWCC	2 cut(s)	210, 451
XapI	RAATTY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	2 cut(s)	178, 220
XmnI	GAANNNNTTC	1 cut(s)	689
XspI	CTAG	2 cut(s)	576, 717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.