Encoded by
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 1368 |
| AclWI | GGATC | 2 cut(s) | 13, 611 |
| AcoI | YGGCCR | 1 cut(s) | 284 |
| AcsI | RAATTY | 2 cut(s) | 733, 1519 |
| AcuI | CTGAAG | 2 cut(s) | 142, 1454 |
| AfaI | GTAC | 3 cut(s) | 475, 608, 1304 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 67, 1012 |
| AgsI | TTSAA | 7 cut(s) | 268, 732, 884, 898, 920, 1333, 1389 |
| AleI | CACNNNNGTG | 1 cut(s) | 329 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 1418, 1450 |
| AluBI | AGCT | 9 cut(s) | 18, 50, 164, 361, 726, 969, 1310, 1393, 1468 |
| AluI | AGCT | 9 cut(s) | 18, 50, 164, 361, 726, 969, 1310, 1393, 1468 |
| Alw21I | GWGCWC | 2 cut(s) | 95, 728 |
| Alw26I | GTCTC | 1 cut(s) | 435 |
| AlwI | GGATC | 2 cut(s) | 13, 611 |
| AoxI | GGCC | 1 cut(s) | 284 |
| ApeKI | GCWGC | 5 cut(s) | 164, 407, 969, 1028, 1174 |
| ApoI | RAATTY | 2 cut(s) | 733, 1519 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1052, 1084 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 150 |
| AsuC2I | CCSGG | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 6 cut(s) | 343, 355, 783, 944, 1100, 1505 |
| BalI | TGGCCA | 1 cut(s) | 286 |
| BanII | GRGCYC | 1 cut(s) | 728 |
| BbsI | GAAGAC | 1 cut(s) | 1534 |
| Bbv12I | GWGCWC | 2 cut(s) | 95, 728 |
| BbvI | GCAGC | 5 cut(s) | 151, 394, 956, 1015, 1186 |
| BccI | CCATC | 3 cut(s) | 61, 545, 938 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1359, 1393 |
| BclI | TGATCA | 1 cut(s) | 996 |
| BcnI | CCSGG | 1 cut(s) | 62 |
| BcoDI | GTCTC | 1 cut(s) | 435 |
| BfaI | CTAG | 5 cut(s) | 137, 866, 1041, 1179, 1263 |
| BfmI | CTRYAG | 2 cut(s) | 1209, 1455 |
| BisI | GCNGC | 5 cut(s) | 165, 408, 970, 1029, 1175 |
| BlsI | GCNGC | 5 cut(s) | 166, 409, 971, 1030, 1176 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| BmiI | GGNNCC | 2 cut(s) | 1140, 1366 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| BmsI | GCATC | 3 cut(s) | 829, 1312, 1464 |
| BpiI | GAAGAC | 1 cut(s) | 1534 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 958, 990 |
| BpmI | CTGGAG | 1 cut(s) | 1484 |
| BpuEI | CTTGAG | 2 cut(s) | 1227, 1562 |
| BpuMI | CCSGG | 1 cut(s) | 62 |
| BsaAI | YACGTR | 1 cut(s) | 1114 |
| BsaI | GGTCTC | 1 cut(s) | 435 |
| BsaJI | CCNNGG | 1 cut(s) | 548 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 67, 1012 |
| Bse1I | ACTGG | 4 cut(s) | 457, 891, 1051, 1387 |
| Bse3DI | GCAATG | 6 cut(s) | 83, 190, 200, 1240, 1305, 1348 |
| BseDI | CCNNGG | 1 cut(s) | 548 |
| BseGI | GGATG | 1 cut(s) | 709 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 67, 1012 |
| BseMI | GCAATG | 6 cut(s) | 83, 190, 200, 1240, 1305, 1348 |
| BseMII | CTCAG | 2 cut(s) | 501, 557 |
| BseNI | ACTGG | 4 cut(s) | 457, 891, 1051, 1387 |
| BseRI | GAGGAG | 1 cut(s) | 423 |
| BseXI | GCAGC | 5 cut(s) | 151, 394, 956, 1015, 1186 |
| BseYI | CCCAGC | 1 cut(s) | 1310 |
| BshFI | GGCC | 1 cut(s) | 286 |
| BsiHKAI | GWGCWC | 2 cut(s) | 95, 728 |
| BsiSI | CCGG | 1 cut(s) | 62 |
| BslFI | GGGAC | 3 cut(s) | 312, 1091, 1528 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 67, 1012 |
| BsmAI | GTCTC | 1 cut(s) | 435 |
| BsmFI | GGGAC | 3 cut(s) | 312, 1091, 1528 |
| BsnI | GGCC | 1 cut(s) | 286 |
| Bso31I | GGTCTC | 1 cut(s) | 435 |
| Bsp1286I | GDGCHC | 2 cut(s) | 95, 728 |
| Bsp1407I | TGTACA | 1 cut(s) | 1302 |
| Bsp143I | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| BspACI | CCGC | 1 cut(s) | 1368 |
| BspANI | GGCC | 1 cut(s) | 286 |
| BspCNI | CTCAG | 2 cut(s) | 502, 556 |
| BspLI | GGNNCC | 2 cut(s) | 1140, 1366 |
| BspMAI | CTGCAG | 2 cut(s) | 1213, 1459 |
| BspPI | GGATC | 2 cut(s) | 13, 611 |
| BspQI | GCTCTTC | 1 cut(s) | 733 |
| BspTNI | GGTCTC | 1 cut(s) | 435 |
| BsrDI | GCAATG | 6 cut(s) | 83, 190, 200, 1240, 1305, 1348 |
| BsrGI | TGTACA | 1 cut(s) | 1302 |
| BsrI | ACTGG | 4 cut(s) | 457, 891, 1051, 1387 |
| BssECI | CCNNGG | 1 cut(s) | 548 |
| BssMI | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| BssT1I | CCWWGG | 1 cut(s) | 548 |
| Bst4CI | ACNGT | 9 cut(s) | 44, 151, 232, 278, 328, 404, 473, 848, 1011 |
| Bst6I | CTCTTC | 1 cut(s) | 733 |
| BstAPI | GCANNNNNTGC | 3 cut(s) | 761, 1322, 1454 |
| BstAUI | TGTACA | 1 cut(s) | 1302 |
| BstBAI | YACGTR | 1 cut(s) | 1114 |
| BstC8I | GCNNGC | 1 cut(s) | 16 |
| BstDEI | CTNAG | 4 cut(s) | 96, 510, 543, 903 |
| BstF5I | GGATG | 1 cut(s) | 709 |
| BstKTI | GATC | 4 cut(s) | 8, 619, 999, 1128 |
| BstMAI | GTCTC | 1 cut(s) | 435 |
| BstMBI | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 661, 761, 1322, 1454, 1474 |
| BstNSI | RCATGY | 3 cut(s) | 171, 695, 1005 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstSFI | CTRYAG | 2 cut(s) | 1209, 1455 |
| BstV1I | GCAGC | 5 cut(s) | 151, 394, 956, 1015, 1186 |
| BstV2I | GAAGAC | 1 cut(s) | 1534 |
| BstX2I | RGATCY | 1 cut(s) | 5 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 294 |
| BstYI | RGATCY | 1 cut(s) | 5 |
| BsuRI | GGCC | 1 cut(s) | 286 |
| BtsCI | GGATG | 1 cut(s) | 709 |
| BtsI | GCAGTG | 1 cut(s) | 417 |
| BtsIMutI | CAGTG | 6 cut(s) | 40, 324, 417, 844, 859, 1044 |
| Cac8I | GCNNGC | 1 cut(s) | 16 |
| Csp6I | GTAC | 3 cut(s) | 474, 607, 1303 |
| CviQI | GTAC | 3 cut(s) | 474, 607, 1303 |
| DdeI | CTNAG | 4 cut(s) | 96, 510, 543, 903 |
| DpnI | GATC | 4 cut(s) | 7, 618, 998, 1127 |
| DpnII | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| DraI | TTTAAA | 1 cut(s) | 399 |
| EaeI | YGGCCR | 1 cut(s) | 284 |
| Eam1104I | CTCTTC | 1 cut(s) | 733 |
| EarI | CTCTTC | 1 cut(s) | 733 |
| Ecl136II | GAGCTC | 1 cut(s) | 726 |
| Eco130I | CCWWGG | 1 cut(s) | 548 |
| Eco24I | GRGCYC | 1 cut(s) | 728 |
| Eco31I | GGTCTC | 1 cut(s) | 435 |
| Eco53kI | GAGCTC | 1 cut(s) | 726 |
| Eco57I | CTGAAG | 2 cut(s) | 142, 1454 |
| EcoICRI | GAGCTC | 1 cut(s) | 726 |
| EcoT14I | CCWWGG | 1 cut(s) | 548 |
| EcoT22I | ATGCAT | 1 cut(s) | 1361 |
| EcoT38I | GRGCYC | 1 cut(s) | 728 |
| ErhI | CCWWGG | 1 cut(s) | 548 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 350, 382 |
| FaqI | GGGAC | 3 cut(s) | 312, 1091, 1528 |
| FauNDI | CATATG | 2 cut(s) | 963, 1372 |
| FbaI | TGATCA | 1 cut(s) | 996 |
| Fnu4HI | GCNGC | 5 cut(s) | 165, 408, 970, 1029, 1175 |
| FokI | GGATG | 1 cut(s) | 716 |
| FriOI | GRGCYC | 1 cut(s) | 728 |
| Fsp4HI | GCNGC | 5 cut(s) | 165, 408, 970, 1029, 1175 |
| FspBI | CTAG | 5 cut(s) | 137, 866, 1041, 1179, 1263 |
| GluI | GCNGC | 5 cut(s) | 165, 408, 970, 1029, 1175 |
| GsaI | CCCAGC | 1 cut(s) | 1314 |
| GsuI | CTGGAG | 1 cut(s) | 1484 |
| HaeIII | GGCC | 1 cut(s) | 286 |
| HapII | CCGG | 1 cut(s) | 62 |
| HincII | GTYRAC | 2 cut(s) | 823, 1221 |
| HindII | GTYRAC | 2 cut(s) | 823, 1221 |
| HinfI | GANTC | 5 cut(s) | 346, 480, 1055, 1238, 1376 |
| HpaII | CCGG | 1 cut(s) | 62 |
| HphI | GGTGA | 6 cut(s) | 343, 355, 783, 944, 1100, 1505 |
| Hpy166II | GTNNAC | 3 cut(s) | 154, 823, 1221 |
| Hpy188I | TCNGA | 6 cut(s) | 161, 511, 943, 1072, 1473, 1526 |
| Hpy188III | TCNNGA | 3 cut(s) | 1142, 1244, 1463 |
| Hpy8I | GTNNAC | 3 cut(s) | 154, 823, 1221 |
| HpyAV | CCTTC | 2 cut(s) | 79, 262 |
| HpyCH4III | ACNGT | 9 cut(s) | 44, 151, 232, 278, 328, 404, 473, 848, 1011 |
| HpyCH4IV | ACGT | 2 cut(s) | 808, 1113 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 661, 761, 1322, 1454, 1474 |
| HpyF3I | CTNAG | 4 cut(s) | 96, 510, 543, 903 |
| HpySE526I | ACGT | 2 cut(s) | 808, 1113 |
| Ksp22I | TGATCA | 1 cut(s) | 996 |
| Kzo9I | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| LguI | GCTCTTC | 1 cut(s) | 733 |
| LmnI | GCTCC | 3 cut(s) | 47, 1144, 1465 |
| Lsp1109I | GCAGC | 5 cut(s) | 151, 394, 956, 1015, 1186 |
| LweI | GCATC | 3 cut(s) | 829, 1312, 1464 |
| MaeI | CTAG | 5 cut(s) | 137, 866, 1041, 1179, 1263 |
| MaeII | ACGT | 2 cut(s) | 808, 1113 |
| MaeIII | GTNAC | 4 cut(s) | 251, 459, 1088, 1493 |
| MalI | GATC | 4 cut(s) | 7, 618, 998, 1127 |
| MboI | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| MboII | GAAGA | 4 cut(s) | 358, 720, 848, 1539 |
| MflI | RGATCY | 1 cut(s) | 5 |
| MhlI | GDGCHC | 2 cut(s) | 95, 728 |
| MlsI | TGGCCA | 1 cut(s) | 286 |
| MluNI | TGGCCA | 1 cut(s) | 286 |
| MlyI | GAGTC | 1 cut(s) | 1049 |
| MnlI | CCTC | 6 cut(s) | 206, 309, 444, 505, 597, 822 |
| Mox20I | TGGCCA | 1 cut(s) | 286 |
| Mph1103I | ATGCAT | 1 cut(s) | 1361 |
| MroXI | GAANNNNTTC | 1 cut(s) | 150 |
| MscI | TGGCCA | 1 cut(s) | 286 |
| MseI | TTAA | 5 cut(s) | 116, 227, 398, 1098, 1548 |
| MslI | CAYNNNNRTG | 3 cut(s) | 329, 702, 1133 |
| Msp20I | TGGCCA | 1 cut(s) | 286 |
| MspI | CCGG | 1 cut(s) | 62 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 661, 761, 1322, 1454, 1474 |
| NciI | CCSGG | 1 cut(s) | 62 |
| NdeI | CATATG | 2 cut(s) | 963, 1372 |
| NdeII | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| NlaIV | GGNNCC | 2 cut(s) | 1140, 1366 |
| NmuCI | GTSAC | 3 cut(s) | 251, 1088, 1493 |
| NsiI | ATGCAT | 1 cut(s) | 1361 |
| NspI | RCATGY | 3 cut(s) | 171, 695, 1005 |
| OliI | CACNNNNGTG | 1 cut(s) | 329 |
| PciSI | GCTCTTC | 1 cut(s) | 733 |
| PdmI | GAANNNNTTC | 1 cut(s) | 150 |
| PfeI | GAWTC | 4 cut(s) | 346, 480, 1238, 1376 |
| PfoI | TCCNGGA | 1 cut(s) | 60 |
| PkrI | GCNGC | 5 cut(s) | 166, 409, 971, 1030, 1176 |
| PleI | GAGTC | 1 cut(s) | 1049 |
| PpsI | GAGTC | 1 cut(s) | 1049 |
| Ppu21I | YACGTR | 1 cut(s) | 1114 |
| Psp124BI | GAGCTC | 1 cut(s) | 728 |
| PspFI | CCCAGC | 1 cut(s) | 1310 |
| PspN4I | GGNNCC | 2 cut(s) | 1140, 1366 |
| PstI | CTGCAG | 2 cut(s) | 1213, 1459 |
| PsuI | RGATCY | 1 cut(s) | 5 |
| RsaI | GTAC | 3 cut(s) | 475, 608, 1304 |
| RsaNI | GTAC | 3 cut(s) | 474, 607, 1303 |
| RseI | CAYNNNNRTG | 3 cut(s) | 329, 702, 1133 |
| SacI | GAGCTC | 1 cut(s) | 728 |
| SapI | GCTCTTC | 1 cut(s) | 733 |
| SaqAI | TTAA | 5 cut(s) | 116, 227, 398, 1098, 1548 |
| SatI | GCNGC | 5 cut(s) | 165, 408, 970, 1029, 1175 |
| Sau3AI | GATC | 4 cut(s) | 5, 616, 996, 1125 |
| SchI | GAGTC | 1 cut(s) | 1049 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SduI | GDGCHC | 2 cut(s) | 95, 728 |
| SfaNI | GCATC | 3 cut(s) | 829, 1312, 1464 |
| SfcI | CTRYAG | 2 cut(s) | 1209, 1455 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 329, 702, 1133 |
| SmlI | CTYRAG | 2 cut(s) | 1242, 1541 |
| SmoI | CTYRAG | 2 cut(s) | 1242, 1541 |
| SsiI | CCGC | 1 cut(s) | 1368 |
| SspMI | CTAG | 5 cut(s) | 137, 866, 1041, 1179, 1263 |
| SstI | GAGCTC | 1 cut(s) | 728 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| StyI | CCWWGG | 1 cut(s) | 548 |
| TaaI | ACNGT | 9 cut(s) | 44, 151, 232, 278, 328, 404, 473, 848, 1011 |
| TaiI | ACGT | 2 cut(s) | 811, 1116 |
| TaqI | TCGA | 1 cut(s) | 1379 |
| TatI | WGTACW | 2 cut(s) | 473, 1302 |
| TfiI | GAWTC | 4 cut(s) | 346, 480, 1238, 1376 |
| Tru1I | TTAA | 5 cut(s) | 116, 227, 398, 1098, 1548 |
| Tru9I | TTAA | 5 cut(s) | 116, 227, 398, 1098, 1548 |
| TscAI | CASTG | 6 cut(s) | 47, 331, 424, 851, 859, 1051 |
| TseFI | GTSAC | 3 cut(s) | 251, 1088, 1493 |
| TseI | GCWGC | 5 cut(s) | 164, 407, 969, 1028, 1174 |
| Tsp45I | GTSAC | 3 cut(s) | 251, 1088, 1493 |
| TspRI | CASTG | 6 cut(s) | 47, 331, 424, 851, 859, 1051 |
| XapI | RAATTY | 2 cut(s) | 733, 1519 |
| XceI | RCATGY | 3 cut(s) | 171, 695, 1005 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1419 |
| XmnI | GAANNNNTTC | 1 cut(s) | 150 |
| XspI | CTAG | 5 cut(s) | 137, 866, 1041, 1179, 1263 |
| Zsp2I | ATGCAT | 1 cut(s) | 1361 |