Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009850.1

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

76571 .. 78452

Gene Structure 1882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009850.1_g000016.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

atggcttcgatctcggggatcgtaacaattggtatcaaagcccgcacttggggcctttcccggcgagtccagcagcttacggaggtgggatttccggcgggtgttacagctctccttatcattcttacgatagctctacctgagagaaaggaaaaagaacttgaagataaagatggtgaagatgataatgaggatgaaggggaaaatgatggtgcaaagaattatggtgatggtgaaagttatagtgacgactttcagaatgggcagatggtgacagattcagatgaagaagagttggagtctcaaaatccagaatcagtagcccaaccagtggagtctcaaagtcatgatgagataaacaagcgtgcgttcaagtacgctcgagtgcttcacaagctccaggctgagcgtaaaaggagtactatcattgacattgctatctggaaatatgagactaccacgtgtaataactcttgcactgtcgttgatgctctggcatgtaattggtatttcgagtatgcccagaaggtgtttgatgaaatgactgaatcaacaaccaagcagactgctacttgggctcttggcacatgcaatttagtaagcaatcctccttgggttgacaatgttgggaatgctatcagtacaacaaatccaggattgggctcaactggattgaagcctcccaaggaatatgatgacccaaatttgtacatagagtacttgccacctactcttgatgatgttggtttgattggtgctattgcaggcatgattggtttctccctcgaaggtcgaactattgatgtcggagttgctgacaagcctccacagtctgttatgtctcctggaccaccagcttcagcaatgtcaccacaccagcctattggcatgtatccactggacctctttgacaataagaagaggatgaataatatcaattatgtcaggagggtgtttatcatggacaactatgaggagctcactctagagtaccttggattcgtaaagggtgttgtggactctgatgacttgcctctcaacatctcttatgagatgcttccacaaaacacgattttcaaggtgatcaggaagaacattgtgaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0010467 GO:0016070 GO:0033993 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0071704 GO:0090304 GO:0097305 GO:1901360 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 RRM_1 SF1-HH

Protein Analysis

368

Amino Acids

40.91

Weight (kDa)

4.53

Isoelectric Point (pI)

47.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	331
AciI	CCGC	2 cut(s)	43, 98
AclWI	GGATC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	703
AcuI	CTGAAG	1 cut(s)	843
AcvI	CACGTG	1 cut(s)	462
AfaI	GTAC	6 cut(s)	377, 421, 643, 710, 719, 992
AfiI	CCNNNNNNNGG	4 cut(s)	48, 49, 331, 659
AflIII	ACRYGT	1 cut(s)	461
AgsI	TTSAA	4 cut(s)	164, 373, 676, 1078
AjnI	CCWGG	3 cut(s)	399, 652, 844
AluBI	AGCT	6 cut(s)	76, 110, 134, 397, 857, 979
AluI	AGCT	6 cut(s)	76, 110, 134, 397, 857, 979
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	4 cut(s)	306, 342, 446, 846
AlwI	GGATC	1 cut(s)	26
Ama87I	CYCGRG	2 cut(s)	13, 381
AoxI	GGCC	1 cut(s)	52
ApeKI	GCWGC	1 cut(s)	73
ApoI	RAATTY	1 cut(s)	703
AspS9I	GGNCC	3 cut(s)	52, 848, 901
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	6 cut(s)	188, 239, 245, 283, 861, 1093
AvaI	CYCGRG	2 cut(s)	13, 381
AvaII	GGWCC	2 cut(s)	848, 901
BanII	GRGCYC	3 cut(s)	580, 665, 981
BbrPI	CACGTG	1 cut(s)	462
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	4 cut(s)	167, 203, 224, 262
BciT130I	CCWGG	3 cut(s)	401, 654, 846
BciVI	GTATCC	1 cut(s)	903
BclI	TGATCA	1 cut(s)	1083
BcnI	CCSGG	1 cut(s)	61
BcoDI	GTCTC	4 cut(s)	306, 342, 446, 846
BfaI	CTAG	1 cut(s)	986
BfuI	GTATCC	1 cut(s)	903
BisI	GCNGC	1 cut(s)	74
BlpI	GCTNAGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	75
BmcAI	AGTACT	2 cut(s)	421, 719
Bme1390I	CCNGG	4 cut(s)	61, 401, 654, 846
Bme18I	GGWCC	2 cut(s)	848, 901
BmeT110I	CYCGRG	2 cut(s)	13, 381
BmgT120I	GGNCC	3 cut(s)	52, 848, 901
BmiI	GGNNCC	1 cut(s)	53
BmrFI	CCNGG	4 cut(s)	61, 401, 654, 846
BmsI	GCATC	2 cut(s)	478, 1044
BpmI	CTGGAG	1 cut(s)	383
Bpu1102I	GCTNAGC	1 cut(s)	405
BpuMI	CCSGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	611, 684, 994
Bsc4I	CCNNNNNNNGG	4 cut(s)	48, 49, 331, 659
Bse1I	ACTGG	3 cut(s)	329, 673, 903
Bse3DI	GCAATG	2 cut(s)	432, 870
BseBI	CCWGG	3 cut(s)	401, 654, 846
BseDI	CCNNGG	3 cut(s)	611, 684, 994
BseGI	GGATG	2 cut(s)	199, 930
BseLI	CCNNNNNNNGG	4 cut(s)	48, 49, 331, 659
BseMI	GCAATG	2 cut(s)	432, 870
BseMII	CTCAG	2 cut(s)	132, 396
BseNI	ACTGG	3 cut(s)	329, 673, 903
BseRI	GAGGAG	1 cut(s)	989
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	2 cut(s)	13, 381
BsiSI	CCGG	2 cut(s)	61, 95
BslI	CCNNNNNNNGG	4 cut(s)	48, 49, 331, 659
BsmAI	GTCTC	4 cut(s)	306, 342, 446, 846
BsmI	GAATGC	1 cut(s)	637
BsnI	GGCC	1 cut(s)	54
BsoBI	CYCGRG	2 cut(s)	13, 381
Bsp1286I	GDGCHC	3 cut(s)	580, 665, 981
Bsp1407I	TGTACA	1 cut(s)	708
Bsp143I	GATC	3 cut(s)	9, 18, 1083
Bsp1720I	GCTNAGC	1 cut(s)	405
BspACI	CCGC	2 cut(s)	43, 98
BspANI	GGCC	1 cut(s)	54
BspCNI	CTCAG	2 cut(s)	133, 397
BspHI	TCATGA	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	53
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	432, 870
BsrGI	TGTACA	1 cut(s)	708
BsrI	ACTGG	3 cut(s)	329, 673, 903
BssECI	CCNNGG	3 cut(s)	611, 684, 994
BssMI	GATC	3 cut(s)	9, 18, 1083
BssT1I	CCWWGG	3 cut(s)	611, 684, 994
Bst2UI	CCWGG	3 cut(s)	401, 654, 846
Bst4CI	ACNGT	2 cut(s)	481, 831
Bst6I	CTCTTC	2 cut(s)	285, 914
BstAUI	TGTACA	1 cut(s)	708
BstBAI	YACGTR	1 cut(s)	462
BstC8I	GCNNGC	3 cut(s)	43, 366, 766
BstDEI	CTNAG	2 cut(s)	141, 405
BstF5I	GGATG	2 cut(s)	199, 930
BstKTI	GATC	3 cut(s)	12, 21, 1086
BstMAI	GTCTC	4 cut(s)	306, 342, 446, 846
BstMBI	GATC	3 cut(s)	9, 18, 1083
BstMWI	GCNNNNNNNGC	4 cut(s)	51, 70, 394, 575
BstNI	CCWGG	3 cut(s)	401, 654, 846
BstNSI	RCATGY	3 cut(s)	501, 591, 892
BstSCI	CCNGG	4 cut(s)	59, 399, 652, 844
BstV1I	GCAGC	1 cut(s)	85
BstXI	CCANNNNNNTGG	1 cut(s)	884
BsuI	GTATCC	1 cut(s)	903
BsuRI	GGCC	1 cut(s)	54
BtsCI	GGATG	2 cut(s)	199, 930
BtsIMutI	CAGTG	3 cut(s)	336, 477, 896
Cac8I	GCNNGC	3 cut(s)	43, 366, 766
CciI	TCATGA	1 cut(s)	346
Cfr13I	GGNCC	3 cut(s)	52, 848, 901
Csp6I	GTAC	6 cut(s)	376, 420, 642, 709, 718, 991
CviAII	CATG	6 cut(s)	347, 498, 588, 769, 889, 961
CviQI	GTAC	6 cut(s)	376, 420, 642, 709, 718, 991
DdeI	CTNAG	2 cut(s)	141, 405
DpnI	GATC	3 cut(s)	11, 20, 1085
DpnII	GATC	3 cut(s)	9, 18, 1083
Eam1104I	CTCTTC	2 cut(s)	285, 914
EarI	CTCTTC	2 cut(s)	285, 914
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	3 cut(s)	611, 684, 994
Eco24I	GRGCYC	3 cut(s)	580, 665, 981
Eco47I	GGWCC	2 cut(s)	848, 901
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	1 cut(s)	843
Eco72I	CACGTG	1 cut(s)	462
Eco88I	CYCGRG	2 cut(s)	13, 381
EcoICRI	GAGCTC	1 cut(s)	979
EcoO109I	RGGNCCY	1 cut(s)	52
EcoRII	CCWGG	3 cut(s)	399, 652, 844
EcoT14I	CCWWGG	3 cut(s)	611, 684, 994
EcoT38I	GRGCYC	3 cut(s)	580, 665, 981
ErhI	CCWWGG	3 cut(s)	611, 684, 994
FaeI	CATG	6 cut(s)	350, 501, 591, 772, 892, 964
FatI	CATG	6 cut(s)	346, 497, 587, 768, 888, 960
FauI	CCCGC	2 cut(s)	50, 91
FbaI	TGATCA	1 cut(s)	1083
Fnu4HI	GCNGC	1 cut(s)	74
FokI	GGATG	2 cut(s)	206, 937
FriOI	GRGCYC	3 cut(s)	580, 665, 981
Fsp4HI	GCNGC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	986
GluI	GCNGC	1 cut(s)	74
GsuI	CTGGAG	1 cut(s)	383
HaeIII	GGCC	1 cut(s)	54
HapII	CCGG	2 cut(s)	61, 95
Hin1II	CATG	6 cut(s)	350, 501, 591, 772, 892, 964
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	8 cut(s)	66, 278, 299, 314, 335, 548, 999, 1019
HpaII	CCGG	2 cut(s)	61, 95
HphI	GGTGA	6 cut(s)	188, 239, 245, 283, 861, 1093
Hpy166II	GTNNAC	2 cut(s)	619, 1018
Hpy188I	TCNGA	4 cut(s)	258, 283, 809, 1024
Hpy188III	TCNNGA	7 cut(s)	311, 347, 442, 734, 946, 986, 1087
Hpy8I	GTNNAC	2 cut(s)	619, 1018
HpyAV	CCTTC	3 cut(s)	191, 520, 782
HpyCH4III	ACNGT	2 cut(s)	481, 831
HpyCH4IV	ACGT	1 cut(s)	461
HpyCH4V	TGCA	4 cut(s)	215, 477, 591, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	51, 70, 394, 575
HpyF3I	CTNAG	2 cut(s)	141, 405
HpySE526I	ACGT	1 cut(s)	461
Hsp92II	CATG	6 cut(s)	350, 501, 591, 772, 892, 964
Ksp22I	TGATCA	1 cut(s)	1083
Kzo9I	GATC	3 cut(s)	9, 18, 1083
LmnI	GCTCC	2 cut(s)	402, 976
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	2 cut(s)	478, 1044
MaeI	CTAG	1 cut(s)	986
MaeII	ACGT	1 cut(s)	461
MaeIII	GTNAC	5 cut(s)	22, 103, 245, 271, 867
MalI	GATC	3 cut(s)	11, 20, 1085
MboI	GATC	3 cut(s)	9, 18, 1083
MboII	GAAGA	6 cut(s)	176, 191, 299, 302, 931, 1102
MfeI	CAATTG	1 cut(s)	27
MhlI	GDGCHC	3 cut(s)	580, 665, 981
MluCI	AATT	6 cut(s)	27, 220, 502, 592, 703, 937
MlyI	GAGTC	4 cut(s)	75, 308, 344, 1013
MmeI	TCCRAC	2 cut(s)	276, 787
MspI	CCGG	2 cut(s)	61, 95
MspR9I	CCNGG	4 cut(s)	61, 401, 654, 846
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	637
MvaI	CCWGG	3 cut(s)	401, 654, 846
MwoI	GCNNNNNNNGC	4 cut(s)	51, 70, 394, 575
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	3 cut(s)	9, 18, 1083
NlaIII	CATG	6 cut(s)	350, 501, 591, 772, 892, 964
NlaIV	GGNNCC	1 cut(s)	53
NmuCI	GTSAC	3 cut(s)	245, 271, 867
NspI	RCATGY	3 cut(s)	501, 591, 892
PaeR7I	CTCGAG	1 cut(s)	381
PagI	TCATGA	1 cut(s)	346
PctI	GAATGC	1 cut(s)	637
PfeI	GAWTC	4 cut(s)	278, 314, 548, 999
PflMI	CCANNNNNTGG	1 cut(s)	331
PfoI	TCCNGGA	2 cut(s)	652, 844
PkrI	GCNGC	1 cut(s)	75
PleI	GAGTC	4 cut(s)	74, 307, 343, 1013
PmaCI	CACGTG	1 cut(s)	462
PmlI	CACGTG	1 cut(s)	462
PpsI	GAGTC	4 cut(s)	74, 307, 343, 1013
Ppu21I	YACGTR	1 cut(s)	462
Psp124BI	GAGCTC	1 cut(s)	981
Psp6I	CCWGG	3 cut(s)	399, 652, 844
PspCI	CACGTG	1 cut(s)	462
PspGI	CCWGG	3 cut(s)	399, 652, 844
PspN4I	GGNNCC	1 cut(s)	53
PspPI	GGNCC	3 cut(s)	52, 848, 901
PspXI	VCTCGAGB	1 cut(s)	381
RsaI	GTAC	6 cut(s)	377, 421, 643, 710, 719, 992
RsaNI	GTAC	6 cut(s)	376, 420, 642, 709, 718, 991
SacI	GAGCTC	1 cut(s)	981
SatI	GCNGC	1 cut(s)	74
Sau3AI	GATC	3 cut(s)	9, 18, 1083
Sau96I	GGNCC	3 cut(s)	52, 848, 901
ScaI	AGTACT	2 cut(s)	421, 719
SchI	GAGTC	4 cut(s)	75, 308, 344, 1013
ScrFI	CCNGG	4 cut(s)	61, 401, 654, 846
SduI	GDGCHC	3 cut(s)	580, 665, 981
SfaNI	GCATC	2 cut(s)	478, 1044
Sfr274I	CTCGAG	1 cut(s)	381
SinI	GGWCC	2 cut(s)	848, 901
SlaI	CTCGAG	1 cut(s)	381
SmlI	CTYRAG	1 cut(s)	381
SmoI	CTYRAG	1 cut(s)	381
Sse9I	AATT	6 cut(s)	27, 220, 502, 592, 703, 937
SsiI	CCGC	2 cut(s)	43, 98
SspMI	CTAG	1 cut(s)	986
SstI	GAGCTC	1 cut(s)	981
StyD4I	CCNGG	4 cut(s)	59, 399, 652, 844
StyI	CCWWGG	3 cut(s)	611, 684, 994
TaaI	ACNGT	2 cut(s)	481, 831
TaiI	ACGT	1 cut(s)	464
TaqI	TCGA	5 cut(s)	8, 382, 513, 786, 793
TasI	AATT	6 cut(s)	27, 220, 502, 592, 703, 937
TatI	WGTACW	4 cut(s)	419, 641, 708, 717
TfiI	GAWTC	4 cut(s)	278, 314, 548, 999
TscAI	CASTG	3 cut(s)	336, 484, 903
TseFI	GTSAC	3 cut(s)	245, 271, 867
TseI	GCWGC	1 cut(s)	73
Tsp45I	GTSAC	3 cut(s)	245, 271, 867
TspDTI	ATGAA	4 cut(s)	210, 300, 552, 941
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	3 cut(s)	336, 484, 903
Van91I	CCANNNNNTGG	1 cut(s)	331
VpaK11BI	GGWCC	2 cut(s)	848, 901
XapI	RAATTY	1 cut(s)	703
XbaI	TCTAGA	1 cut(s)	985
XceI	RCATGY	3 cut(s)	501, 591, 892
XhoI	CTCGAG	1 cut(s)	381
XspI	CTAG	1 cut(s)	986
ZrmI	AGTACT	2 cut(s)	421, 719

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.