Rorug05G0066400

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
5715873 .. 5719112
3240 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0066400.1

Sequence Viewer

Length: 897 bp
ATGAGAGTAGCAGCAATTCATCTAATCCCAATCCTCTTCCTCTTTCCCGCCTTTTTTCCATCCCTCTCCGAAACCACCAACGACGATTCCTCCTCCTCCGTCGTATCCCAACTCCACCAATTCAAGCTCAAAATCGCTCATTTAGAATCGGTTCTTGCGGAAAGCGTTCGGAATCTGAATGAGAGAATCGATCAAATCGAACAGCGCGAGAAGCGGATTGACGACATGTCGCAGAAGATCCACCATTTGCAATCTGTGTTATCCACTCTCAAGGAACACTCATTGCATGGTGATCAAAGACTTAATGCTCTAGAAGAAGAGGTACGGCGTCTCTGGGCCGCTTCAAGGAAGAACAATTTCGACATTCATGTTTTGCAGTCCAAAGCACAAGATGCTGAGGAGAGGCTTGAAATGGTTACCTCTAAGGCTGAGAAGATGAATGACATGGTTACCGAGCAATGGATTCAACTTCAGAGACTGCAGCAGGCTCTTCATATTCAACAATCGAGGACTTTGAGGGTTCAAAGGCAAGTAAGCTATACAAGATGCACATTCTTGAAGTTCTTCAACAACCTTCTTGATGACCATTTGCTGAAGCTGCTTGGGTCTAACGTGAGATCCTTTTTCTCACGAACCCTGCATCAATTGGAAAGATTCTTTATAGCATTTAAGAGGTCTCACCATAAGTTGCAGCATTCCATCAAAGAGGCATTGGAGAAGAATGAATTTACTGCAGCTCTTGCTAATGAGGAATTGGTTTTCTATGTGGCTACTGCCCTCATCATCTTGCCAATAATGATGGCCTGGATGTTTCTCTCCTCAAAATTCCAAGGTAGTTGCTCTATTGACGTGACCTATATGCACTCGCAGACCTATACAAGTCCTGAGGGTGAATGA

Protein Analysis

298

Amino Acids

34.77

Weight (kDa)

7.29

Isoelectric Point (pI)

60.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 207
AciI CCGC 4 cut(s) 48, 158, 214, 339
AclWI GGATC 2 cut(s) 232, 612
AcsI RAATTY 2 cut(s) 725, 824
AcuI CTGAAG 2 cut(s) 455, 614
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 1 cut(s) 324
AfiI CCNNNNNNNGG 2 cut(s) 345, 459
AflIII ACRYGT 1 cut(s) 225
AgsI TTSAA 8 cut(s) 124, 345, 410, 467, 500, 524, 559, 568
AhdI GACNNNNNGTC 1 cut(s) 226
AjiI CACGTC 1 cut(s) 850
AjnI CCWGG 1 cut(s) 803
AluBI AGCT 4 cut(s) 127, 537, 598, 737
AluI AGCT 4 cut(s) 127, 537, 598, 737
Alw26I GTCTC 3 cut(s) 335, 469, 681
AlwI GGATC 2 cut(s) 232, 612
AlwNI CAGNNNCTG 1 cut(s) 478
AoxI GGCC 2 cut(s) 336, 801
ApeKI GCWGC 5 cut(s) 11, 481, 598, 691, 734
ApoI RAATTY 2 cut(s) 725, 824
Asp700I GAANNNNTTC 4 cut(s) 150, 165, 356, 563
AspLEI GCGC 1 cut(s) 207
AspS9I GGNCC 1 cut(s) 336
AsuHPI GGTGA 2 cut(s) 302, 671
AxyI CCTNAGG 1 cut(s) 885
BarI GAAGNNNNNNTAC 2 cut(s) 306, 338
BbvCI CCTCAGC 1 cut(s) 396
BbvI GCAGC 5 cut(s) 23, 493, 585, 703, 746
BccI CCATC 3 cut(s) 67, 707, 793
BceAI ACGGC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 805
BciVI GTATCC 1 cut(s) 115
BclI TGATCA 1 cut(s) 292
BcoDI GTCTC 3 cut(s) 335, 469, 681
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 2 cut(s) 479, 732
BfuI GTATCC 1 cut(s) 115
BisI GCNGC 6 cut(s) 12, 339, 482, 599, 692, 735
BlsI GCNGC 6 cut(s) 13, 340, 483, 600, 693, 736
Bme1390I CCNGG 1 cut(s) 805
BmeRI GACNNNNNGTC 1 cut(s) 226
BmgBI CACGTC 1 cut(s) 850
BmgT120I GGNCC 1 cut(s) 336
BmrFI CCNGG 1 cut(s) 805
BmsI GCATC 3 cut(s) 382, 536, 649
Bpu10I CCTNAGC 1 cut(s) 396
BpuEI CTTGAG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 189
BsaHI GRCGYC 1 cut(s) 328
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 1 cut(s) 829
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 2 cut(s) 345, 459
Bse21I CCTNAGG 1 cut(s) 885
Bse3DI GCAATG 2 cut(s) 281, 464
BseBI CCWGG 1 cut(s) 805
BseCI ATCGAT 1 cut(s) 189
BseDI CCNNGG 1 cut(s) 829
BseGI GGATG 2 cut(s) 59, 813
BseLI CCNNNNNNNGG 2 cut(s) 345, 459
BseMI GCAATG 2 cut(s) 281, 464
BseMII CTCAG 3 cut(s) 387, 420, 876
BseRI GAGGAG 4 cut(s) 82, 85, 413, 808
BseXI GCAGC 5 cut(s) 23, 493, 585, 703, 746
Bsh1236I CGCG 1 cut(s) 207
BshFI GGCC 2 cut(s) 338, 803
BshVI ATCGAT 1 cut(s) 189
BslI CCNNNNNNNGG 2 cut(s) 345, 459
BsmAI GTCTC 3 cut(s) 335, 469, 681
BsmBI CGTCTC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 694
BsnI GGCC 2 cut(s) 338, 803
Bso31I GGTCTC 1 cut(s) 681
Bsp143I GATC 4 cut(s) 190, 237, 292, 617
BspACI CCGC 4 cut(s) 48, 158, 214, 339
BspANI GGCC 2 cut(s) 338, 803
BspCNI CTCAG 3 cut(s) 388, 421, 877
BspDI ATCGAT 1 cut(s) 189
BspFNI CGCG 1 cut(s) 207
BspMAI CTGCAG 2 cut(s) 483, 736
BspPI GGATC 2 cut(s) 232, 612
BspQI GCTCTTC 1 cut(s) 495
BspTNI GGTCTC 1 cut(s) 681
BsrDI GCAATG 2 cut(s) 281, 464
BssECI CCNNGG 1 cut(s) 829
BssMI GATC 4 cut(s) 190, 237, 292, 617
BssNI GRCGYC 1 cut(s) 328
BssT1I CCWWGG 1 cut(s) 829
Bst2UI CCWGG 1 cut(s) 805
Bst6I CTCTTC 3 cut(s) 41, 312, 495
BstACI GRCGYC 1 cut(s) 328
BstAPI GCANNNNNTGC 2 cut(s) 392, 740
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 4 cut(s) 396, 423, 429, 885
BstEII GGTNACC 2 cut(s) 415, 448
BstF5I GGATG 2 cut(s) 59, 813
BstFNI CGCG 1 cut(s) 207
BstHHI GCGC 1 cut(s) 207
BstKTI GATC 4 cut(s) 193, 240, 295, 620
BstMAI GTCTC 3 cut(s) 335, 469, 681
BstMBI GATC 4 cut(s) 190, 237, 292, 617
BstMWI GCNNNNNNNGC 4 cut(s) 211, 392, 598, 740
BstNI CCWGG 1 cut(s) 805
BstNSI RCATGY 1 cut(s) 229
BstPI GGTNACC 2 cut(s) 415, 448
BstSCI CCNGG 1 cut(s) 803
BstSFI CTRYAG 2 cut(s) 479, 732
BstUI CGCG 1 cut(s) 207
BstV1I GCAGC 5 cut(s) 23, 493, 585, 703, 746
BstX2I RGATCY 2 cut(s) 237, 617
BstYI RGATCY 2 cut(s) 237, 617
Bsu15I ATCGAT 1 cut(s) 189
Bsu36I CCTNAGG 1 cut(s) 885
BsuI GTATCC 1 cut(s) 115
BsuRI GGCC 2 cut(s) 338, 803
BsuTUI ATCGAT 1 cut(s) 189
BtrI CACGTC 1 cut(s) 850
BtsCI GGATG 2 cut(s) 59, 813
Cac8I GCNNGC 1 cut(s) 486
CaiI CAGNNNCTG 1 cut(s) 478
CfoI GCGC 1 cut(s) 207
Cfr13I GGNCC 1 cut(s) 336
ClaI ATCGAT 1 cut(s) 189
CseI GACGC 1 cut(s) 317
Csp6I GTAC 1 cut(s) 323
CviAII CATG 4 cut(s) 226, 287, 368, 445
CviQI GTAC 1 cut(s) 323
DdeI CTNAG 4 cut(s) 396, 423, 429, 885
DpnI GATC 4 cut(s) 192, 239, 294, 619
DpnII GATC 4 cut(s) 190, 237, 292, 617
DriI GACNNNNNGTC 1 cut(s) 226
Eam1104I CTCTTC 3 cut(s) 41, 312, 495
Eam1105I GACNNNNNGTC 1 cut(s) 226
EarI CTCTTC 3 cut(s) 41, 312, 495
Eco130I CCWWGG 1 cut(s) 829
Eco31I GGTCTC 1 cut(s) 681
Eco57I CTGAAG 2 cut(s) 455, 614
Eco81I CCTNAGG 1 cut(s) 885
Eco91I GGTNACC 2 cut(s) 415, 448
EcoO65I GGTNACC 2 cut(s) 415, 448
EcoRII CCWGG 1 cut(s) 803
EcoT14I CCWWGG 1 cut(s) 829
ErhI CCWWGG 1 cut(s) 829
Esp3I CGTCTC 1 cut(s) 335
FaeI CATG 4 cut(s) 229, 290, 371, 448
FatI CATG 4 cut(s) 225, 286, 367, 444
FauI CCCGC 1 cut(s) 55
FbaI TGATCA 1 cut(s) 292
Fnu4HI GCNGC 6 cut(s) 12, 339, 482, 599, 692, 735
FokI GGATG 2 cut(s) 46, 820
Fsp4HI GCNGC 6 cut(s) 12, 339, 482, 599, 692, 735
FspBI CTAG 1 cut(s) 311
GlaI GCGC 1 cut(s) 206
GluI GCNGC 6 cut(s) 12, 339, 482, 599, 692, 735
HaeIII GGCC 2 cut(s) 338, 803
HgaI GACGC 1 cut(s) 317
HhaI GCGC 1 cut(s) 207
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 4 cut(s) 229, 290, 371, 448
Hin6I GCGC 1 cut(s) 205
HinP1I GCGC 1 cut(s) 205
HinfI GANTC 6 cut(s) 86, 146, 172, 186, 463, 654
HphI GGTGA 2 cut(s) 302, 671
Hpy188I TCNGA 4 cut(s) 70, 171, 177, 474
Hpy188III TCNNGA 5 cut(s) 311, 556, 578, 630, 884
Hpy99I CGWCG 2 cut(s) 86, 104
HpyAV CCTTC 1 cut(s) 584
HpyCH4IV ACGT 2 cut(s) 612, 849
HpyCH4V TGCA 9 cut(s) 250, 286, 376, 481, 549, 640, 691, 734, 862
HpyF10VI GCNNNNNNNGC 4 cut(s) 211, 392, 598, 740
HpyF3I CTNAG 4 cut(s) 396, 423, 429, 885
HpySE526I ACGT 2 cut(s) 612, 849
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 4 cut(s) 229, 290, 371, 448
HspAI GCGC 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 292
Kzo9I GATC 4 cut(s) 190, 237, 292, 617
LguI GCTCTTC 1 cut(s) 495
LpnPI CCDG 5 cut(s) 319, 470, 650, 790, 817
Lsp1109I GCAGC 5 cut(s) 23, 493, 585, 703, 746
LweI GCATC 3 cut(s) 382, 536, 649
MaeI CTAG 1 cut(s) 311
MaeII ACGT 2 cut(s) 612, 849
MaeIII GTNAC 3 cut(s) 415, 448, 850
MalI GATC 4 cut(s) 192, 239, 294, 619
MboI GATC 4 cut(s) 190, 237, 292, 617
MboII GAAGA 9 cut(s) 28, 247, 326, 329, 361, 445, 482, 556, 730
MfeI CAATTG 1 cut(s) 644
MflI RGATCY 2 cut(s) 237, 617
MluCI AATT 7 cut(s) 15, 119, 355, 644, 725, 752, 824
MroXI GAANNNNTTC 4 cut(s) 150, 165, 356, 563
MseI TTAA 2 cut(s) 303, 669
MspR9I CCNGG 1 cut(s) 805
MunI CAATTG 1 cut(s) 644
Mva1269I GAATGC 1 cut(s) 694
MvaI CCWGG 1 cut(s) 805
MvnI CGCG 1 cut(s) 207
MwoI GCNNNNNNNGC 4 cut(s) 211, 392, 598, 740
NdeII GATC 4 cut(s) 190, 237, 292, 617
NlaIII CATG 4 cut(s) 229, 290, 371, 448
NmuCI GTSAC 1 cut(s) 850
NspI RCATGY 1 cut(s) 229
PciI ACATGT 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 495
PcsI WCGNNNNNNNCGW 2 cut(s) 195, 204
PctI GAATGC 1 cut(s) 694
PdmI GAANNNNTTC 4 cut(s) 150, 165, 356, 563
PfeI GAWTC 6 cut(s) 86, 146, 172, 186, 463, 654
PkrI GCNGC 6 cut(s) 13, 340, 483, 600, 693, 736
PscI ACATGT 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 803
PspEI GGTNACC 2 cut(s) 415, 448
PspGI CCWGG 1 cut(s) 803
PspPI GGNCC 1 cut(s) 336
PstI CTGCAG 2 cut(s) 483, 736
PstNI CAGNNNCTG 1 cut(s) 478
PsuI RGATCY 2 cut(s) 237, 617
RsaI GTAC 1 cut(s) 324
RsaNI GTAC 1 cut(s) 323
SapI GCTCTTC 1 cut(s) 495
SaqAI TTAA 2 cut(s) 303, 669
SatI GCNGC 6 cut(s) 12, 339, 482, 599, 692, 735
Sau3AI GATC 4 cut(s) 190, 237, 292, 617
Sau96I GGNCC 1 cut(s) 336
ScrFI CCNGG 1 cut(s) 805
SfaNI GCATC 3 cut(s) 382, 536, 649
SfcI CTRYAG 2 cut(s) 479, 732
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 7 cut(s) 15, 119, 355, 644, 725, 752, 824
SsiI CCGC 4 cut(s) 48, 158, 214, 339
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 1 cut(s) 803
StyI CCWWGG 1 cut(s) 829
TaiI ACGT 2 cut(s) 615, 852
TaqI TCGA 4 cut(s) 189, 198, 360, 506
TasI AATT 7 cut(s) 15, 119, 355, 644, 725, 752, 824
TauI GCSGC 1 cut(s) 341
TfiI GAWTC 6 cut(s) 86, 146, 172, 186, 463, 654
Tru1I TTAA 2 cut(s) 303, 669
Tru9I TTAA 2 cut(s) 303, 669
TseFI GTSAC 1 cut(s) 850
TseI GCWGC 5 cut(s) 11, 481, 598, 691, 734
Tsp45I GTSAC 1 cut(s) 850
TspDTI ATGAA 5 cut(s) 8, 356, 452, 482, 738
TspGWI ACGGA 1 cut(s) 88
XapI RAATTY 2 cut(s) 725, 824
XbaI TCTAGA 1 cut(s) 310
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 4 cut(s) 150, 165, 356, 563
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.