Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003600.1

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

51338 .. 53676

Gene Structure 2339 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003600.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

atggctgatgtttacattggtgatgctgagacatttgcattgcacgtagagatcaaccggcttgttagcttgatcatcaataccttttacagcaacaaagaaatattcctaggccaacttattagcaattgcaatgatgtaagtctccagtctctttctctgttacaatatttcattccaagcttagttaatgaaacgctaagctacaaaaacttgctattaaaggcactcgttttgctcgtccctgataagaccaacaataccctctccatcattaatagcggtatcggcaagaccaaagcagagcctcatgtgcgcgtttggcttcgatctcttgagacattgatcatcgaacgctcgctggattactgtcaccgcttcaagaactcgcccactaatcccaatgatgcgtcgttcttcaccattgagactctcgagatgagttctgctcgtgttctgctactacactcgtcattgcctaatcctgctactgcactcgctgcactcatactcgtccaatactgctactgtacttgtactattgtcctactattgcactcgtcatcgcttaatcctgctactgcactcgtccaatctcgctactgcacttgctacactcatactcgtctagtgctgctactgcacttgtactcttgtcttgctattctactcgtcatcgcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

227

Amino Acids

25.33

Weight (kDa)

7.02

Isoelectric Point (pI)

46.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	318
AciI	CCGC	2 cut(s)	282, 376
AfaI	GTAC	3 cut(s)	532, 538, 650
AgsI	TTSAA	1 cut(s)	382
AluBI	AGCT	3 cut(s)	69, 183, 204
AluI	AGCT	3 cut(s)	69, 183, 204
Alw26I	GTCTC	5 cut(s)	23, 149, 156, 332, 422
Ama87I	CYCGRG	1 cut(s)	434
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	500, 634
AseI	ATTAAT	1 cut(s)	276
AspA2I	CCTAGG	1 cut(s)	109
AspLEI	GCGC	1 cut(s)	318
AsuHPI	GGTGA	3 cut(s)	32, 365, 412
AvaI	CYCGRG	1 cut(s)	434
AvrII	CCTAGG	1 cut(s)	109
BauI	CACGAG	1 cut(s)	450
BbvI	GCAGC	2 cut(s)	487, 621
BccI	CCATC	1 cut(s)	278
BclI	TGATCA	2 cut(s)	72, 345
BcoDI	GTCTC	5 cut(s)	23, 149, 156, 332, 422
BfaI	CTAG	2 cut(s)	110, 629
BisI	GCNGC	2 cut(s)	501, 635
BlnI	CCTAGG	1 cut(s)	109
BlpI	GCTNAGC	1 cut(s)	200
BlsI	GCNGC	2 cut(s)	502, 636
BmeT110I	CYCGRG	1 cut(s)	434
BmsI	GCATC	2 cut(s)	13, 397
BplI	GAGNNNNNCTC	2 cut(s)	433, 465
BpmI	CTGGAG	1 cut(s)	131
Bpu1102I	GCTNAGC	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	356
BsaAI	YACGTR	1 cut(s)	46
BsaJI	CCNNGG	1 cut(s)	109
Bse118I	RCCGGY	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	148
Bse3DI	GCAATG	3 cut(s)	38, 139, 473
BseDI	CCNNGG	1 cut(s)	109
BseMI	GCAATG	3 cut(s)	38, 139, 473
BseMII	CTCAG	1 cut(s)	18
BseNI	ACTGG	1 cut(s)	148
BseXI	GCAGC	2 cut(s)	487, 621
BsgI	GTGCAG	5 cut(s)	477, 486, 567, 589, 626
Bsh1236I	CGCG	1 cut(s)	318
BshFI	GGCC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	434
BsiSI	CCGG	1 cut(s)	58
BslFI	GGGAC	1 cut(s)	227
BsmAI	GTCTC	5 cut(s)	23, 149, 156, 332, 422
BsmFI	GGGAC	1 cut(s)	227
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	434
Bsp143I	GATC	4 cut(s)	51, 72, 329, 345
Bsp1720I	GCTNAGC	1 cut(s)	200
BspACI	CCGC	2 cut(s)	282, 376
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	318
BsrDI	GCAATG	3 cut(s)	38, 139, 473
BsrFI	RCCGGY	1 cut(s)	57
BsrI	ACTGG	1 cut(s)	148
BssAI	RCCGGY	1 cut(s)	57
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	4 cut(s)	51, 72, 329, 345
BssSI	CACGAG	1 cut(s)	450
BssT1I	CCWWGG	1 cut(s)	109
Bst2BI	CACGAG	1 cut(s)	450
Bst4CI	ACNGT	2 cut(s)	371, 530
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstBAI	YACGTR	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	359
BstDEI	CTNAG	3 cut(s)	27, 184, 200
BstFNI	CGCG	1 cut(s)	318
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	4 cut(s)	54, 75, 332, 348
BstMAI	GTCTC	5 cut(s)	23, 149, 156, 332, 422
BstMBI	GATC	4 cut(s)	51, 72, 329, 345
BstMWI	GCNNNNNNNGC	5 cut(s)	288, 313, 322, 500, 640
BstUI	CGCG	1 cut(s)	318
BstV1I	GCAGC	2 cut(s)	487, 621
BsuRI	GGCC	1 cut(s)	114
BtgZI	GCGATG	2 cut(s)	549, 661
Cac8I	GCNNGC	1 cut(s)	359
CfoI	GCGC	1 cut(s)	318
Cfr10I	RCCGGY	1 cut(s)	57
CseI	GACGC	1 cut(s)	399
Csp6I	GTAC	3 cut(s)	531, 537, 649
CviAII	CATG	1 cut(s)	311
CviJI	RGCY	8 cut(s)	5, 61, 69, 114, 183, 204, 307, 325
CviKI_1	RGCY	8 cut(s)	5, 61, 69, 114, 183, 204, 307, 325
CviQI	GTAC	3 cut(s)	531, 537, 649
DdeI	CTNAG	3 cut(s)	27, 184, 200
DpnI	GATC	4 cut(s)	53, 74, 331, 347
DpnII	GATC	4 cut(s)	51, 72, 329, 345
Eco130I	CCWWGG	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	434
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	1 cut(s)	314
FaiI	YATR	3 cut(s)	312, 509, 621
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	1 cut(s)	310
FbaI	TGATCA	2 cut(s)	72, 345
Fnu4HI	GCNGC	2 cut(s)	501, 635
Fsp4HI	GCNGC	2 cut(s)	501, 635
FspBI	CTAG	2 cut(s)	110, 629
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	2 cut(s)	501, 635
GsuI	CTGGAG	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	58
HgaI	GACGC	1 cut(s)	399
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	1 cut(s)	314
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HindIII	AAGCTT	1 cut(s)	181
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	1 cut(s)	58
HphI	GGTGA	3 cut(s)	32, 365, 412
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188III	TCNNGA	4 cut(s)	335, 382, 434, 436
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	1 cut(s)	415
HpyCH4III	ACNGT	2 cut(s)	371, 530
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	9 cut(s)	38, 43, 132, 494, 503, 556, 584, 606, 643
HpyF10VI	GCNNNNNNNGC	5 cut(s)	288, 313, 322, 500, 640
HpyF3I	CTNAG	3 cut(s)	27, 184, 200
HpySE526I	ACGT	1 cut(s)	45
Hsp92II	CATG	1 cut(s)	314
HspAI	GCGC	1 cut(s)	316
Ksp22I	TGATCA	2 cut(s)	72, 345
Kzo9I	GATC	4 cut(s)	51, 72, 329, 345
LpnPI	CCDG	6 cut(s)	71, 161, 258, 347, 498, 588
Lsp1109I	GCAGC	2 cut(s)	487, 621
LweI	GCATC	2 cut(s)	13, 397
MaeI	CTAG	2 cut(s)	110, 629
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	2 cut(s)	162, 371
MalI	GATC	4 cut(s)	53, 74, 331, 347
MboI	GATC	4 cut(s)	51, 72, 329, 345
MboII	GAAGA	1 cut(s)	409
MfeI	CAATTG	1 cut(s)	127
MluCI	AATT	1 cut(s)	127
MlyI	GAGTC	1 cut(s)	424
MnlI	CCTC	2 cut(s)	275, 318
MseI	TTAA	5 cut(s)	189, 221, 276, 570, 682
MspI	CCGG	1 cut(s)	58
MunI	CAATTG	1 cut(s)	127
MvnI	CGCG	1 cut(s)	318
MwoI	GCNNNNNNNGC	5 cut(s)	288, 313, 322, 500, 640
NdeII	GATC	4 cut(s)	51, 72, 329, 345
NlaIII	CATG	1 cut(s)	314
NmuCI	GTSAC	1 cut(s)	371
PaeR7I	CTCGAG	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	502, 636
PleI	GAGTC	1 cut(s)	424
PpsI	GAGTC	1 cut(s)	424
Ppu21I	YACGTR	1 cut(s)	46
PshBI	ATTAAT	1 cut(s)	276
RsaI	GTAC	3 cut(s)	532, 538, 650
RsaNI	GTAC	3 cut(s)	531, 537, 649
SaqAI	TTAA	5 cut(s)	189, 221, 276, 570, 682
SatI	GCNGC	2 cut(s)	501, 635
Sau3AI	GATC	4 cut(s)	51, 72, 329, 345
SchI	GAGTC	1 cut(s)	424
SetI	ASST	5 cut(s)	48, 71, 86, 185, 206
SfaNI	GCATC	2 cut(s)	13, 397
Sfr274I	CTCGAG	1 cut(s)	434
SlaI	CTCGAG	1 cut(s)	434
SmlI	CTYRAG	2 cut(s)	335, 434
SmoI	CTYRAG	2 cut(s)	335, 434
Sse9I	AATT	1 cut(s)	127
SsiI	CCGC	2 cut(s)	282, 376
SspI	AATATT	2 cut(s)	105, 170
SspMI	CTAG	2 cut(s)	110, 629
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	371, 530
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	3 cut(s)	328, 351, 435
TasI	AATT	1 cut(s)	127
TatI	WGTACW	3 cut(s)	530, 536, 648
Tru1I	TTAA	5 cut(s)	189, 221, 276, 570, 682
Tru9I	TTAA	5 cut(s)	189, 221, 276, 570, 682
TseFI	GTSAC	1 cut(s)	371
TseI	GCWGC	2 cut(s)	500, 634
Tsp45I	GTSAC	1 cut(s)	371
TspDTI	ATGAA	2 cut(s)	163, 207
VspI	ATTAAT	1 cut(s)	276
XhoI	CTCGAG	1 cut(s)	434
XmaJI	CCTAGG	1 cut(s)	109
XspI	CTAG	2 cut(s)	110, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.