Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Reverse (-)

79171906 .. 79177944

Gene Structure 6039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00057180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1128 bp

ATGGCGGATGTGAAGATGGCTGATGCTGAGACGTTTGCTTTCCAGACCGAGATCAACCAGCTTCTGAGCTTGATCATCAATACGTTCTACAGCAACAAGGAGATTTTTCTTCGCAAGCTTATCAGCAATTCATCTGATTTAAGTCTTCAATCTCGTTTCTCTGATGCTCTGGACACGATTAGATTTGAGAGTCTTATGGATAAGAGCAAGCTTGAAGCTCAGCCGGAGCTTTTCATCAGGATTGTTCCTGATAAGACCAACAATACTCTCTCCATCATTGATAGCGGGATCGGCATGACCAAAGCAGCATTTGTTTCCAGCCCAAGAAGAAAATTAGACTATAGCCTTTTCCTGATTGTGTTGGTGGACAGTGAATCTAATTCAAAATTTGGTGAACAATATGGCACAATTGCAAGGTCTGGAACCAAGGAGTTTATGGAAGCATTGGCTTCTGGAGTTTCTGATGTGAGCATGATTGGACAGTTTGGTGTTGGTTTCTATTCGGCATATCTTGTTGCGGAGAAGGTCATTGTGACTACAAAGCACAATGATGATGAGCAATACATCTGGGAGTCTCAGGCTGGTGGTTCATTCACAGTGACAAGGGATGTCAATGGCGAGCAGCTTGGCAGGGGCACCAAGATCACTCTCTTCCTCAAGGAGGACCAGACAATCAAAGACATCTTGGGAGACAGGGTTGAGAAGGTGGTTGTGTCCGATAGAATTGTCAACTCACCTTGCTGCTTGGTCACTGGTGAATATGGATGGAGTGCAAACATGAAGAGGATTATGAAGGCTCAGGCACTCAGGGACAACAGCATCGGTGCTTACATGTCCAGCAAGAAGACCATGGAAATCAACCCTGACAATGGCATCATGGAGGAGCTGAGGAAGAGAGCCAAAGCTGACAAAAATGAGAAGTCCGTGAAGGACCTTGTGCTGCTGCTGTTTAAGACAGCTCTGCTGACATCTGGATTCATCCTTGATGAGCCGAACACATTTGCCTCGAGAATTCACAGGATGCTGAAGCTGGGGCTTAGCATTGACGAAGACGAGACTGTTGAGGATGCAGACATGCCTGAGCTGGAGGATGCGGCTGAGGAGAGCAAAATGGAGGAAGTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005829 GO:0005886 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009814 GO:0009816 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0030312 GO:0031090 GO:0031974 GO:0031981 GO:0034622 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044428 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051131 GO:0051592 GO:0051704 GO:0051707 GO:0051716 GO:0061077 GO:0065003 GO:0070013 GO:0070887 GO:0071241 GO:0071248 GO:0071277 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

375

Amino Acids

41.9

Weight (kDa)

4.85

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	223 - 370	8.4e-54	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	635
AciI	CCGC	4 cut(s)	5, 285, 518, 1094
AclWI	GGATC	1 cut(s)	296
AcsI	RAATTY	2 cut(s)	386, 1011
AcuI	CTGAAG	1 cut(s)	1046
AfiI	CCNNNNNNNGG	2 cut(s)	661, 869
AflIII	ACRYGT	1 cut(s)	831
AgsI	TTSAA	3 cut(s)	149, 215, 384
Alw26I	GTCTC	4 cut(s)	23, 579, 684, 1049
AlwI	GGATC	1 cut(s)	296
AlwNI	CAGNNNCTG	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	1006
ApeKI	GCWGC	5 cut(s)	305, 622, 741, 940, 943
ApoI	RAATTY	2 cut(s)	386, 1011
AspS9I	GGNCC	2 cut(s)	664, 931
AsuHPI	GGTGA	3 cut(s)	404, 726, 767
AvaI	CYCGRG	1 cut(s)	1006
AvaII	GGWCC	2 cut(s)	664, 931
BaeGI	GKGCMC	1 cut(s)	638
BanI	GGYRCC	1 cut(s)	635
BbsI	GAAGAC	3 cut(s)	137, 851, 1056
BbvCI	CCTCAGC	2 cut(s)	887, 1098
BbvI	GCAGC	5 cut(s)	317, 634, 728, 927, 930
BccI	CCATC	3 cut(s)	10, 281, 759
BclI	TGATCA	1 cut(s)	72
BcoDI	GTCTC	4 cut(s)	23, 579, 684, 1049
BfmI	CTRYAG	2 cut(s)	88, 340
BisI	GCNGC	6 cut(s)	306, 623, 742, 941, 944, 1095
BlpI	GCTNAGC	2 cut(s)	219, 1037
BlsI	GCNGC	6 cut(s)	307, 624, 743, 942, 945, 1096
Bme18I	GGWCC	2 cut(s)	664, 931
BmeT110I	CYCGRG	1 cut(s)	1006
BmgT120I	GGNCC	2 cut(s)	664, 931
BmiI	GGNNCC	2 cut(s)	424, 637
BmsI	GCATC	7 cut(s)	13, 154, 828, 882, 1011, 1057, 1081
BpiI	GAAGAC	3 cut(s)	137, 851, 1056
BpmI	CTGGAG	2 cut(s)	474, 1106
Bpu10I	CCTNAGC	4 cut(s)	798, 887, 1080, 1098
Bpu1102I	GCTNAGC	2 cut(s)	219, 1037
BpuEI	CTTGAG	1 cut(s)	641
BsaJI	CCNNGG	2 cut(s)	426, 849
BsaXI	ACNNNNNCTCC	2 cut(s)	681, 711
Bsc4I	CCNNNNNNNGG	2 cut(s)	661, 869
Bse1I	ACTGG	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	426, 849
BseGI	GGATG	7 cut(s)	13, 613, 770, 978, 1026, 1072, 1096
BseLI	CCNNNNNNNGG	2 cut(s)	661, 869
BseMII	CTCAG	9 cut(s)	18, 56, 233, 590, 812, 820, 878, 1071, 1089
BseNI	ACTGG	1 cut(s)	757
BseRI	GAGGAG	2 cut(s)	896, 1115
BseSI	GKGCMC	1 cut(s)	638
BseXI	GCAGC	5 cut(s)	317, 634, 728, 927, 930
BseYI	CCCAGC	1 cut(s)	1030
BshNI	GGYRCC	1 cut(s)	635
BsiHKCI	CYCGRG	1 cut(s)	1006
BsiSI	CCGG	1 cut(s)	224
BslFI	GGGAC	1 cut(s)	824
BslI	CCNNNNNNNGG	2 cut(s)	661, 869
BsmAI	GTCTC	4 cut(s)	23, 579, 684, 1049
BsmBI	CGTCTC	1 cut(s)	23
BsmFI	GGGAC	1 cut(s)	824
BsoBI	CYCGRG	1 cut(s)	1006
Bsp1286I	GDGCHC	1 cut(s)	638
Bsp143I	GATC	4 cut(s)	51, 72, 288, 642
Bsp1720I	GCTNAGC	2 cut(s)	219, 1037
Bsp19I	CCATGG	1 cut(s)	849
BspACI	CCGC	4 cut(s)	5, 285, 518, 1094
BspCNI	CTCAG	9 cut(s)	19, 57, 232, 589, 811, 819, 879, 1072, 1090
BspLI	GGNNCC	2 cut(s)	424, 637
BspPI	GGATC	1 cut(s)	296
BspT107I	GGYRCC	1 cut(s)	635
BsrI	ACTGG	1 cut(s)	757
BssECI	CCNNGG	2 cut(s)	426, 849
BssMI	GATC	4 cut(s)	51, 72, 288, 642
BssT1I	CCWWGG	2 cut(s)	426, 849
Bst4CI	ACNGT	4 cut(s)	371, 483, 598, 1060
Bst6I	CTCTTC	3 cut(s)	656, 776, 887
BstC8I	GCNNGC	3 cut(s)	116, 209, 620
BstDSI	CCRYGG	1 cut(s)	849
BstENI	CCTNNNNNAGG	1 cut(s)	659
BstF5I	GGATG	7 cut(s)	13, 613, 770, 978, 1026, 1072, 1096
BstKTI	GATC	4 cut(s)	54, 75, 291, 645
BstMAI	GTCTC	4 cut(s)	23, 579, 684, 1049
BstMBI	GATC	4 cut(s)	51, 72, 288, 642
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNSI	RCATGY	2 cut(s)	835, 1078
BstSFI	CTRYAG	2 cut(s)	88, 340
BstSLI	GKGCMC	1 cut(s)	638
BstV1I	GCAGC	5 cut(s)	317, 634, 728, 927, 930
BstV2I	GAAGAC	3 cut(s)	137, 851, 1056
BtgI	CCRYGG	1 cut(s)	849
BtsCI	GGATG	7 cut(s)	13, 613, 770, 978, 1026, 1072, 1096
BtsIMutI	CAGTG	3 cut(s)	376, 603, 750
Cac8I	GCNNGC	3 cut(s)	116, 209, 620
CaiI	CAGNNNCTG	1 cut(s)	64
Cfr13I	GGNCC	2 cut(s)	664, 931
CviAII	CATG	7 cut(s)	295, 472, 778, 832, 850, 877, 1075
DpnI	GATC	4 cut(s)	53, 74, 290, 644
DpnII	GATC	4 cut(s)	51, 72, 288, 642
Eam1104I	CTCTTC	3 cut(s)	656, 776, 887
EarI	CTCTTC	3 cut(s)	656, 776, 887
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	426, 849
Eco47I	GGWCC	2 cut(s)	664, 931
Eco57I	CTGAAG	1 cut(s)	1046
Eco88I	CYCGRG	1 cut(s)	1006
EcoNI	CCTNNNNNAGG	1 cut(s)	659
EcoO109I	RGGNCCY	1 cut(s)	931
EcoRI	GAATTC	1 cut(s)	1011
EcoT14I	CCWWGG	2 cut(s)	426, 849
ErhI	CCWWGG	2 cut(s)	426, 849
Esp3I	CGTCTC	1 cut(s)	23
FaeI	CATG	7 cut(s)	298, 475, 781, 835, 853, 880, 1078
FaqI	GGGAC	1 cut(s)	824
FatI	CATG	7 cut(s)	294, 471, 777, 831, 849, 876, 1074
FauI	CCCGC	1 cut(s)	278
FbaI	TGATCA	1 cut(s)	72
Fnu4HI	GCNGC	6 cut(s)	306, 623, 742, 941, 944, 1095
FokI	GGATG	7 cut(s)	20, 620, 777, 965, 1033, 1079, 1103
Fsp4HI	GCNGC	6 cut(s)	306, 623, 742, 941, 944, 1095
GluI	GCNGC	6 cut(s)	306, 623, 742, 941, 944, 1095
GsaI	CCCAGC	1 cut(s)	1034
GsuI	CTGGAG	2 cut(s)	474, 1106
HapII	CCGG	1 cut(s)	224
Hin1II	CATG	7 cut(s)	298, 475, 781, 835, 853, 880, 1078
HincII	GTYRAC	1 cut(s)	730
HindII	GTYRAC	1 cut(s)	730
HindIII	AAGCTT	2 cut(s)	116, 209
HinfI	GANTC	4 cut(s)	190, 374, 572, 975
HpaII	CCGG	1 cut(s)	224
HphI	GGTGA	3 cut(s)	404, 726, 767
Hpy166II	GTNNAC	4 cut(s)	367, 395, 730, 1123
Hpy188I	TCNGA	5 cut(s)	66, 136, 163, 463, 718
Hpy188III	TCNNGA	9 cut(s)	43, 170, 238, 248, 352, 420, 453, 972, 1008
Hpy8I	GTNNAC	4 cut(s)	367, 395, 730, 1123
HpyAV	CCTTC	4 cut(s)	517, 697, 787, 922
HpyCH4III	ACNGT	4 cut(s)	371, 483, 598, 1060
HpyCH4IV	ACGT	2 cut(s)	32, 83
HpyCH4V	TGCA	3 cut(s)	413, 773, 1070
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpySE526I	ACGT	2 cut(s)	32, 83
Hsp92II	CATG	7 cut(s)	298, 475, 781, 835, 853, 880, 1078
Ksp22I	TGATCA	1 cut(s)	72
Kzo9I	GATC	4 cut(s)	51, 72, 288, 642
LmnI	GCTCC	2 cut(s)	226, 883
Lsp1109I	GCAGC	5 cut(s)	317, 634, 728, 927, 930
LweI	GCATC	7 cut(s)	13, 154, 828, 882, 1011, 1057, 1081
MaeII	ACGT	2 cut(s)	32, 83
MaeIII	GTNAC	3 cut(s)	532, 598, 748
MalI	GATC	4 cut(s)	53, 74, 290, 644
MboI	GATC	4 cut(s)	51, 72, 288, 642
MboII	GAAGA	9 cut(s)	25, 101, 137, 339, 643, 793, 856, 904, 1061
MfeI	CAATTG	1 cut(s)	408
MhlI	GDGCHC	1 cut(s)	638
MluCI	AATT	7 cut(s)	127, 332, 379, 386, 408, 723, 1011
MlyI	GAGTC	2 cut(s)	199, 581
MseI	TTAA	2 cut(s)	140, 951
MslI	CAYNNNNRTG	1 cut(s)	549
MspI	CCGG	1 cut(s)	224
MunI	CAATTG	1 cut(s)	408
MwoI	GCNNNNNNNGC	1 cut(s)	291
NcoI	CCATGG	1 cut(s)	849
NdeII	GATC	4 cut(s)	51, 72, 288, 642
NlaIII	CATG	7 cut(s)	298, 475, 781, 835, 853, 880, 1078
NlaIV	GGNNCC	2 cut(s)	424, 637
NmuCI	GTSAC	3 cut(s)	532, 598, 748
NspI	RCATGY	2 cut(s)	835, 1078
PaeR7I	CTCGAG	1 cut(s)	1006
PciI	ACATGT	1 cut(s)	831
PfeI	GAWTC	2 cut(s)	374, 975
PkrI	GCNGC	6 cut(s)	307, 624, 743, 942, 945, 1096
PleI	GAGTC	2 cut(s)	198, 580
PpsI	GAGTC	2 cut(s)	198, 580
PpuMI	RGGWCCY	1 cut(s)	931
PscI	ACATGT	1 cut(s)	831
Psp5II	RGGWCCY	1 cut(s)	931
PspFI	CCCAGC	1 cut(s)	1030
PspN4I	GGNNCC	2 cut(s)	424, 637
PspPI	GGNCC	2 cut(s)	664, 931
PspPPI	RGGWCCY	1 cut(s)	931
PstNI	CAGNNNCTG	1 cut(s)	64
RseI	CAYNNNNRTG	1 cut(s)	549
SaqAI	TTAA	2 cut(s)	140, 951
SatI	GCNGC	6 cut(s)	306, 623, 742, 941, 944, 1095
Sau3AI	GATC	4 cut(s)	51, 72, 288, 642
Sau96I	GGNCC	2 cut(s)	664, 931
SchI	GAGTC	2 cut(s)	199, 581
SduI	GDGCHC	1 cut(s)	638
SfaNI	GCATC	7 cut(s)	13, 154, 828, 882, 1011, 1057, 1081
SfcI	CTRYAG	2 cut(s)	88, 340
Sfr274I	CTCGAG	1 cut(s)	1006
SinI	GGWCC	2 cut(s)	664, 931
SlaI	CTCGAG	1 cut(s)	1006
SmiMI	CAYNNNNRTG	1 cut(s)	549
SmlI	CTYRAG	2 cut(s)	656, 1006
SmoI	CTYRAG	2 cut(s)	656, 1006
Sse9I	AATT	7 cut(s)	127, 332, 379, 386, 408, 723, 1011
SsiI	CCGC	4 cut(s)	5, 285, 518, 1094
StyI	CCWWGG	2 cut(s)	426, 849
TaaI	ACNGT	4 cut(s)	371, 483, 598, 1060
TaiI	ACGT	2 cut(s)	35, 86
TaqI	TCGA	1 cut(s)	1007
TaqII	GACCGA	1 cut(s)	62
TasI	AATT	7 cut(s)	127, 332, 379, 386, 408, 723, 1011
TauI	GCSGC	1 cut(s)	1097
TfiI	GAWTC	2 cut(s)	374, 975
Tru1I	TTAA	2 cut(s)	140, 951
Tru9I	TTAA	2 cut(s)	140, 951
TscAI	CASTG	3 cut(s)	376, 603, 757
TseFI	GTSAC	3 cut(s)	532, 598, 748
TseI	GCWGC	5 cut(s)	305, 622, 741, 940, 943
Tsp45I	GTSAC	3 cut(s)	532, 598, 748
TspDTI	ATGAA	6 cut(s)	120, 223, 579, 794, 806, 967
TspGWI	ACGGA	1 cut(s)	913
TspRI	CASTG	3 cut(s)	376, 603, 757
VpaK11BI	GGWCC	2 cut(s)	664, 931
XagI	CCTNNNNNAGG	1 cut(s)	659
XapI	RAATTY	2 cut(s)	386, 1011
XceI	RCATGY	2 cut(s)	835, 1078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	433
XhoI	CTCGAG	1 cut(s)	1006

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.