Rh2CG384100

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
52376801 .. 52382183
5383 bp
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UTR
Exon/CDS
Intron
Rh2CG384100.1

Sequence Viewer

Length: 537 bp
ATGGCTGATGTTTACATTGGTGATGCTGAGACATTCGCATTCCACTTAGAGATCAATCAGCTTGTTAGCTTGATCATCAATACCTTTTACAGCAACAAAGAAATATTCCTAGGCCAACTTATCAGCAATTGCAATGATGCCTTGGACAAAATTAGAGTCGAGAGCCTTACAGATAATAGCAAGCTTGATGCTCAACCAGAGTTTTTCATCAGGCTCGTCCCTGATAAGACCAACAATACCCTCTCCATCATTGATAGCAGTATCGGCATGACCAAAGAAGCTGCAATTTATACCGTGTGGTATATATTGTCGTTATTGAATGCAAGTATGAGAAGAACTGAAAAATGGCGGTTGTCTCTTGCCCAAATTACTTCTCGGTCACAATCTCAGATGAAAGGTAAGTCAGGGCCATATATCTCATGGAACAAAGAAATGGATGCTGCATTGGCTAAAGCGTTGATTGACCAAATGAAGCAAGGTAATAAGGTTGGTGGACAGTGGACAAGACATGCCTTCCAGCAGTTGTGCATGAGTTAA

Protein Analysis

178

Amino Acids

20.16

Weight (kDa)

7.74

Isoelectric Point (pI)

39.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 349
AgsI TTSAA 1 cut(s) 319
AluBI AGCT 4 cut(s) 61, 69, 184, 281
AluI AGCT 4 cut(s) 61, 69, 184, 281
Alw26I GTCTC 2 cut(s) 23, 360
AoxI GGCC 2 cut(s) 112, 407
ApeKI GCWGC 2 cut(s) 281, 440
ArsI GACNNNNNNTTYG 2 cut(s) 141, 173
AspA2I CCTAGG 1 cut(s) 109
AspS9I GGNCC 1 cut(s) 407
AsuHPI GGTGA 1 cut(s) 32
AvrII CCTAGG 1 cut(s) 109
BbvI GCAGC 2 cut(s) 268, 427
BccI CCATC 1 cut(s) 254
BclI TGATCA 1 cut(s) 72
BcoDI GTCTC 2 cut(s) 23, 360
BfaI CTAG 1 cut(s) 110
BisI GCNGC 2 cut(s) 282, 441
BlnI CCTAGG 1 cut(s) 109
BlsI GCNGC 2 cut(s) 283, 442
BmgT120I GGNCC 1 cut(s) 407
BmsI GCATC 4 cut(s) 13, 127, 178, 427
BsaJI CCNNGG 2 cut(s) 109, 141
Bse3DI GCAATG 1 cut(s) 139
BseDI CCNNGG 2 cut(s) 109, 141
BseGI GGATG 1 cut(s) 442
BseMI GCAATG 1 cut(s) 139
BseMII CTCAG 2 cut(s) 18, 401
BseXI GCAGC 2 cut(s) 268, 427
BshFI GGCC 2 cut(s) 114, 409
BslFI GGGAC 1 cut(s) 203
BsmAI GTCTC 2 cut(s) 23, 360
BsmFI GGGAC 1 cut(s) 203
BsmI GAATGC 2 cut(s) 38, 325
BsnI GGCC 2 cut(s) 114, 409
Bsp143I GATC 2 cut(s) 51, 72
BspACI CCGC 1 cut(s) 349
BspANI GGCC 2 cut(s) 114, 409
BspCNI CTCAG 2 cut(s) 19, 400
BsrDI GCAATG 1 cut(s) 139
BssECI CCNNGG 2 cut(s) 109, 141
BssMI GATC 2 cut(s) 51, 72
BssT1I CCWWGG 2 cut(s) 109, 141
Bst4CI ACNGT 2 cut(s) 295, 498
BstC8I GCNNGC 1 cut(s) 182
BstDEI CTNAG 3 cut(s) 27, 46, 387
BstF5I GGATG 1 cut(s) 442
BstKTI GATC 2 cut(s) 54, 75
BstMAI GTCTC 2 cut(s) 23, 360
BstMBI GATC 2 cut(s) 51, 72
BstMWI GCNNNNNNNGC 2 cut(s) 264, 446
BstNSI RCATGY 1 cut(s) 512
BstV1I GCAGC 2 cut(s) 268, 427
BsuRI GGCC 2 cut(s) 114, 409
BtsCI GGATG 1 cut(s) 442
BtsIMutI CAGTG 1 cut(s) 503
Cac8I GCNNGC 1 cut(s) 182
Cfr13I GGNCC 1 cut(s) 407
CviAII CATG 4 cut(s) 268, 420, 509, 529
DdeI CTNAG 3 cut(s) 27, 46, 387
DpnI GATC 2 cut(s) 53, 74
DpnII GATC 2 cut(s) 51, 72
Eco130I CCWWGG 2 cut(s) 109, 141
EcoT14I CCWWGG 2 cut(s) 109, 141
ErhI CCWWGG 2 cut(s) 109, 141
FaeI CATG 4 cut(s) 271, 423, 512, 532
FaqI GGGAC 1 cut(s) 203
FatI CATG 4 cut(s) 267, 419, 508, 528
FbaI TGATCA 1 cut(s) 72
Fnu4HI GCNGC 2 cut(s) 282, 441
FokI GGATG 1 cut(s) 449
Fsp4HI GCNGC 2 cut(s) 282, 441
FspBI CTAG 1 cut(s) 110
GluI GCNGC 2 cut(s) 282, 441
HaeIII GGCC 2 cut(s) 114, 409
Hin1II CATG 4 cut(s) 271, 423, 512, 532
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 1 cut(s) 156
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 3 cut(s) 13, 494, 501
Hpy188I TCNGA 1 cut(s) 390
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 3 cut(s) 13, 494, 501
HpyAV CCTTC 1 cut(s) 523
HpyCH4III ACNGT 2 cut(s) 295, 498
HpyCH4V TGCA 5 cut(s) 132, 284, 323, 443, 528
HpyF10VI GCNNNNNNNGC 2 cut(s) 264, 446
HpyF3I CTNAG 3 cut(s) 27, 46, 387
Hsp92II CATG 4 cut(s) 271, 423, 512, 532
Ksp22I TGATCA 1 cut(s) 72
Kzo9I GATC 2 cut(s) 51, 72
LpnPI CCDG 5 cut(s) 196, 210, 234, 390, 530
Lsp1109I GCAGC 2 cut(s) 268, 427
LweI GCATC 4 cut(s) 13, 127, 178, 427
MaeI CTAG 1 cut(s) 110
MaeIII GTNAC 1 cut(s) 378
MalI GATC 2 cut(s) 53, 74
MboI GATC 2 cut(s) 51, 72
MboII GAAGA 1 cut(s) 345
MfeI CAATTG 1 cut(s) 127
MluCI AATT 4 cut(s) 127, 150, 285, 366
MlyI GAGTC 1 cut(s) 165
MnlI CCTC 1 cut(s) 251
MseI TTAA 1 cut(s) 535
MunI CAATTG 1 cut(s) 127
Mva1269I GAATGC 2 cut(s) 38, 325
MwoI GCNNNNNNNGC 2 cut(s) 264, 446
NdeII GATC 2 cut(s) 51, 72
NlaIII CATG 4 cut(s) 271, 423, 512, 532
NmuCI GTSAC 1 cut(s) 378
NspI RCATGY 1 cut(s) 512
PctI GAATGC 2 cut(s) 38, 325
PkrI GCNGC 2 cut(s) 283, 442
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 407
SaqAI TTAA 1 cut(s) 535
SatI GCNGC 2 cut(s) 282, 441
Sau3AI GATC 2 cut(s) 51, 72
Sau96I GGNCC 1 cut(s) 407
SchI GAGTC 1 cut(s) 165
SetI ASST 8 cut(s) 63, 71, 86, 186, 283, 400, 481, 489
SfaNI GCATC 4 cut(s) 13, 127, 178, 427
Sse9I AATT 4 cut(s) 127, 150, 285, 366
SsiI CCGC 1 cut(s) 349
SspI AATATT 1 cut(s) 105
SspMI CTAG 1 cut(s) 110
StyI CCWWGG 2 cut(s) 109, 141
TaaI ACNGT 2 cut(s) 295, 498
TaqI TCGA 1 cut(s) 159
TaqII GACCGA 1 cut(s) 366
TasI AATT 4 cut(s) 127, 150, 285, 366
Tru1I TTAA 1 cut(s) 535
Tru9I TTAA 1 cut(s) 535
TscAI CASTG 1 cut(s) 503
TseFI GTSAC 1 cut(s) 378
TseI GCWGC 2 cut(s) 281, 440
Tsp45I GTSAC 1 cut(s) 378
TspDTI ATGAA 3 cut(s) 196, 407, 485
TspRI CASTG 1 cut(s) 503
XceI RCATGY 1 cut(s) 512
XcmI CCANNNNNNNNNTGG 1 cut(s) 417
XmaJI CCTAGG 1 cut(s) 109
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.