Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

69462234 .. 69467973

Gene Structure 5740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG491300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2220 bp

ATGACTGAATCAGCAACCAAGCAGACTGCTACTTTGGCTCTTGGCATAGGCAATTCAGTAAGCAATCCTCCTTGGGTTAACAATGCTGGGAATGCTATCAGTACAACAAATGCAGGATTGGGCTCAACTGGATTGAAGCCTCCCAAGGAATATGATGACACAAATTTGTACATCGAGTACTTGCCACCTACTCTTGATGATGTTGGTCTGATTGGGTTGTTTTCATGTTTAGGCAATATTGTGATGTGCAAAGTGATGAAGGACCGGGCTACTGGATTGAGTAAAGGTTATGGATTTGTGAAGTATGCTGTTGTTCAAATGGGTAATAGTGCTATTGCAAGCATGATTGCTGTCGGAGTTGCTGACAAGCCACCACAGCCTGTTATGTCTCCTGGACCACCAGCTTCGACAATGTCACCATACCAGCCTATTGGCATGTATCCACTGGACCTCTTTGACAACAAGAAGAAGATGAATAATATCAATTATGTCAGGAGGGTGTTTACCTTGAACAACTGTGAGGAGCTCATTCTAGAGTACCTTGGATTCGTGAAGGATGTTGTGGACTCTGATGACTTGACGCTCAACATCTCTTGTGAGATGCTTCCACAAAACAAGATTTTGAAGGTGATCAGGAAGAACATTGTGAAAGAGGGCATTGAGATGCTCAATGAGATTGATAAGAAGAAAGAAGATTACACCAAGTTGTATGAATTATTCTCCAAAAACTTGAAATTGGGTATCCACGAGGACGGTCAAAACAGAGCTCAATTGGCTGACCTTTGCTACCACTCCACAAAGAGCAGTGAGGAACTTACAAGCTTGAAGGACTATGTTACCAAAATGAAGGAGGGCCCGGGGTTCCTGATGAGCATAGCGTTTTTGGATCCGGGGAATTTAGAAGGGGATCTCCAGTCGGGAGCGATCGCCGGCTACTCTTTGCTGTGGCTGTTAATGTGGGCCACCGCCATGGGCCTGCTGGTCCAGCTGCTCTCGGCCCGCCTCGGAGTCGCCACCGGCCGGCACCTGGCGGAGCTCTGCCGCGACGAGTATCCCAAGTGGGCTGGGCTGGTGCTCTGGTTCATGGCTGAGCTGGCGTTGATTGGGGCGGATATTCAGGAGGTCATTGGGAGTGCCATTGCTATTCAGATTCTCAGCAATGGCTTTTTGCCGCTCTGGGCCGGAGTGCTCATTACGGCGTCGGATTGTTTCCTTCTTTTAATTCTTGAGAACTATGGGGTGAGGAAGTTGGAAGGTGTTTTTGCGGTTCTCATTGCAACTATGGCTTTATCGTTTGCCTGGATGTTTGTTGACACAAAACCAAGTGGAAAAGAACTTTTAATCGGTATTCTGGTTCCAAGACTTAGCTCAAGAACAATTCGGCAGGCTGTGGGAGTTGTGGGTTGCGTCATTATGCCACACAATGTATTTTTGCACTCTGCTTTAGTCCAGTCAAGAAATATTGATCCTCACAAGAAAGGACGGGTTCAAGAGGCACTGAACTACTATTCAATTGAGTCATCAATTGCACTTTTTATCTCCTTCGTCATCAATTTGTTTGTGACCACTGTTTTCGCCAAGGGATTTTATGGTACTAAACAAGCTGATAGTATAGGACTAGTTAATGCAGGTCAGTTTCTTCAGGAGAAGTATGGAGGGGGGCTTTATCCAATTCTTTATATCTGGGGTGTTGGGTTATTGGCAGCTGGACAAAGTAGCACAATAACTGGGACATATGCTGGGCAGTTTATCATGGGAGGCTTCCTTAATCTTCGTTTGAAGAAGTGGCTGAGGGCATTGATCACAAGGAGTTTTGCTATTGTGCCAACTATAATTGTGGCAATTATCTTTAATACATCTGAGGGGTCGCTGGATGTTTTAAATGAGTGGCTTAATGTACTTCAGTCGGTTCAGATTCCTTTTGCTCTTATACCACTTCTCACTTTGGTGTCGAAGGAGCAGATCATGGGGGTCTTCAAGATTGGACCTCTACTCGAAAAAGTGGCATGGACGGTGGCTGTTTTGGTGATGGTAATCAATGGTTATCTATTGCTGGATTTCTTCATTGCTGAAGTTAATGGACTTCTGTTTGGTGTTGTGGTCTGTAGTGGTACGGCTGCATATGTAGCGTTTATTATATATCTGGTATTACGCAGCGGTGCCCTTCCTTCCACTTATTTCAATTCAGTGTACAAGAGATTTGCTGATACAGATACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0001558 GO:0003674 GO:0005215 GO:0005384 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010035 GO:0010038 GO:0010042 GO:0010053 GO:0010054 GO:0012505 GO:0015075 GO:0015318 GO:0016049 GO:0021700 GO:0022603 GO:0022604 GO:0022622 GO:0022857 GO:0022890 GO:0030001 GO:0030154 GO:0030307 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0040007 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0045927 GO:0046873 GO:0046915 GO:0048364 GO:0048468 GO:0048469 GO:0048518 GO:0048522 GO:0048588 GO:0048589 GO:0048638 GO:0048639 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051130 GO:0051179 GO:0051234 GO:0051510 GO:0051512 GO:0051716 GO:0055085 GO:0060560 GO:0065007 GO:0070887 GO:0071241 GO:0071248 GO:0071287 GO:0071421 GO:0071695 GO:0080147 GO:0090558 GO:0090627 GO:0098655 GO:0098660 GO:0098662 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04142 ko04216 ko04978 map04142 map04216 map04978

Pfam Domains

Protein Families

Nramp

Protein Analysis

739

Amino Acids

80.82

Weight (kDa)

6.64

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	56 - 114	4.5e-08	RNA recognition motif
HSP90	PF00183	147 - 285	9.9e-52	Hsp90 protein
Nramp	PF01566	301 - 662	3.2e-113	Natural resistance-associated macrophage protein-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1619
AccB1I	GGYRCC	2 cut(s)	1023, 2159
AccBSI	CCGCTC	1 cut(s)	1174
AccII	CGCG	1 cut(s)	1044
AciI	CCGC	8 cut(s)	966, 1000, 1031, 1042, 1109, 1172, 1265, 2157
AclWI	GGATC	4 cut(s)	881, 894, 915, 1460
AcoI	YGGCCR	1 cut(s)	1018
AcsI	RAATTY	2 cut(s)	163, 895
AcuI	CTGAAG	3 cut(s)	1625, 1886, 2091
AcyI	GRCGYC	1 cut(s)	1199
AfaI	GTAC	8 cut(s)	103, 170, 179, 539, 1594, 1899, 2113, 2192
AfiI	CCNNNNNNNGG	2 cut(s)	1020, 1027
AhlI	ACTAGT	1 cut(s)	1618
AjnI	CCWGG	3 cut(s)	391, 1026, 1298
AleI	CACNNNNGTG	1 cut(s)	1946
Alw21I	GWGCWC	5 cut(s)	528, 769, 1038, 1077, 1191
Alw26I	GTCTC	1 cut(s)	393
AlwI	GGATC	4 cut(s)	881, 894, 915, 1460
Ama87I	CYCGRG	1 cut(s)	856
AoxI	GGCC	6 cut(s)	853, 960, 973, 996, 1018, 1179
ApaI	GGGCCC	1 cut(s)	857
ApeKI	GCWGC	4 cut(s)	988, 1703, 2117, 2154
ApoI	RAATTY	2 cut(s)	163, 895
ArsI	GACNNNNNNTTYG	2 cut(s)	16, 48
AsiSI	GCGATCGC	1 cut(s)	927
AsuC2I	CCSGG	4 cut(s)	266, 857, 858, 891
AsuHPI	GGTGA	4 cut(s)	408, 640, 1252, 2038
AvaI	CYCGRG	1 cut(s)	856
AvaII	GGWCC	5 cut(s)	262, 395, 448, 982, 1985
BaeGI	GKGCMC	2 cut(s)	857, 2164
BamHI	GGATCC	1 cut(s)	886
BanI	GGYRCC	2 cut(s)	1023, 2159
BanII	GRGCYC	5 cut(s)	125, 528, 769, 857, 1038
BauI	CACGAG	1 cut(s)	746
BbsI	GAAGAC	1 cut(s)	1966
Bbv12I	GWGCWC	5 cut(s)	528, 769, 1038, 1077, 1191
BbvCI	CCTCAGC	1 cut(s)	1790
BbvI	GCAGC	4 cut(s)	975, 1715, 2104, 2166
BccI	CCATC	1 cut(s)	2023
BceAI	ACGGC	2 cut(s)	1212, 2130
BciT130I	CCWGG	3 cut(s)	393, 1028, 1300
BciVI	GTATCC	3 cut(s)	450, 752, 1062
BclI	TGATCA	2 cut(s)	630, 1800
BcnI	CCSGG	4 cut(s)	266, 857, 858, 891
BcoDI	GTCTC	1 cut(s)	393
BcuI	ACTAGT	1 cut(s)	1618
BfaI	CTAG	2 cut(s)	533, 1619
BfmI	CTRYAG	1 cut(s)	2104
BfuAI	ACCTGC	1 cut(s)	1619
BfuI	GTATCC	3 cut(s)	450, 752, 1062
BisI	GCNGC	6 cut(s)	989, 1042, 1172, 1704, 2118, 2155
BlpI	GCTNAGC	1 cut(s)	1089
BlsI	GCNGC	6 cut(s)	990, 1043, 1173, 1705, 2119, 2156
BmcAI	AGTACT	1 cut(s)	179
Bme1390I	CCNGG	7 cut(s)	266, 393, 857, 858, 891, 1028, 1300
Bme18I	GGWCC	5 cut(s)	262, 395, 448, 982, 1985
BmeT110I	CYCGRG	1 cut(s)	856
BmiI	GGNNCC	6 cut(s)	855, 863, 888, 1025, 1356, 2161
BmrFI	CCNGG	7 cut(s)	266, 393, 857, 858, 891, 1028, 1300
BmrI	ACTGGG	1 cut(s)	1737
BmsI	GCATC	2 cut(s)	591, 654
BmuI	ACTGGG	1 cut(s)	1737
BpiI	GAAGAC	1 cut(s)	1966
BpmI	CTGGAG	1 cut(s)	896
Bpu10I	CCTNAGC	1 cut(s)	1790
Bpu1102I	GCTNAGC	1 cut(s)	1089
BpuEI	CTTGAG	2 cut(s)	1247, 1354
BpuMI	CCSGG	4 cut(s)	266, 857, 858, 891
BsaBI	GATNNNNATC	1 cut(s)	2033
BsaHI	GRCGYC	1 cut(s)	1199
BsaJI	CCNNGG	9 cut(s)	71, 144, 541, 856, 857, 890, 969, 1003, 1578
Bsc4I	CCNNNNNNNGG	2 cut(s)	1020, 1027
Bse118I	RCCGGY	3 cut(s)	929, 1016, 1020
Bse1I	ACTGG	6 cut(s)	133, 277, 450, 913, 1450, 1732
Bse3DI	GCAATG	4 cut(s)	1137, 1165, 1272, 2064
Bse8I	GATNNNNATC	1 cut(s)	2033
BseBI	CCWGG	3 cut(s)	393, 1028, 1300
BseDI	CCNNGG	9 cut(s)	71, 144, 541, 856, 857, 890, 969, 1003, 1578
BseGI	GGATG	3 cut(s)	562, 1308, 1879
BseJI	GATNNNNATC	1 cut(s)	2033
BseLI	CCNNNNNNNGG	2 cut(s)	1020, 1027
BseMI	GCAATG	4 cut(s)	1137, 1165, 1272, 2064
BseMII	CTCAG	4 cut(s)	1080, 1168, 1781, 1851
BseNI	ACTGG	6 cut(s)	133, 277, 450, 913, 1450, 1732
BseRI	GAGGAG	1 cut(s)	536
BseSI	GKGCMC	2 cut(s)	857, 2164
BseX3I	CGGCCG	1 cut(s)	1018
BseXI	GCAGC	4 cut(s)	975, 1715, 2104, 2166
BseYI	CCCAGC	3 cut(s)	86, 1064, 1739
Bsh1236I	CGCG	1 cut(s)	1044
Bsh1285I	CGRYCG	2 cut(s)	927, 1021
BshFI	GGCC	6 cut(s)	855, 962, 975, 998, 1020, 1181
BshNI	GGYRCC	2 cut(s)	1023, 2159
BsiEI	CGRYCG	2 cut(s)	927, 1021
BsiHKAI	GWGCWC	5 cut(s)	528, 769, 1038, 1077, 1191
BsiHKCI	CYCGRG	1 cut(s)	856
BsiSI	CCGG	7 cut(s)	265, 857, 890, 930, 1017, 1021, 1182
BslFI	GGGAC	1 cut(s)	1744
BslI	CCNNNNNNNGG	2 cut(s)	1020, 1027
BsmAI	GTCTC	1 cut(s)	393
BsmFI	GGGAC	1 cut(s)	1744
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	6 cut(s)	855, 962, 975, 998, 1020, 1181
BsoBI	CYCGRG	1 cut(s)	856
Bsp120I	GGGCCC	1 cut(s)	853
Bsp1286I	GDGCHC	8 cut(s)	125, 528, 769, 857, 1038, 1077, 1191, 2164
Bsp1407I	TGTACA	2 cut(s)	168, 2190
Bsp143I	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
Bsp1720I	GCTNAGC	1 cut(s)	1089
Bsp19I	CCATGG	1 cut(s)	969
BspACI	CCGC	8 cut(s)	966, 1000, 1031, 1042, 1109, 1172, 1265, 2157
BspANI	GGCC	6 cut(s)	855, 962, 975, 998, 1020, 1181
BspCNI	CTCAG	4 cut(s)	1081, 1167, 1782, 1852
BspFNI	CGCG	1 cut(s)	1044
BspLI	GGNNCC	6 cut(s)	855, 863, 888, 1025, 1356, 2161
BspMI	ACCTGC	1 cut(s)	1619
BspPI	GGATC	4 cut(s)	881, 894, 915, 1460
BspT107I	GGYRCC	2 cut(s)	1023, 2159
BsrBI	CCGCTC	1 cut(s)	1174
BsrDI	GCAATG	4 cut(s)	1137, 1165, 1272, 2064
BsrFI	RCCGGY	3 cut(s)	929, 1016, 1020
BsrGI	TGTACA	2 cut(s)	168, 2190
BsrI	ACTGG	6 cut(s)	133, 277, 450, 913, 1450, 1732
BssAI	RCCGGY	3 cut(s)	929, 1016, 1020
BssECI	CCNNGG	9 cut(s)	71, 144, 541, 856, 857, 890, 969, 1003, 1578
BssMI	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
BssNI	GRCGYC	1 cut(s)	1199
BssSI	CACGAG	1 cut(s)	746
BssT1I	CCWWGG	5 cut(s)	71, 144, 541, 969, 1578
Bst2BI	CACGAG	1 cut(s)	746
Bst2UI	CCWGG	3 cut(s)	393, 1028, 1300
Bst4CI	ACNGT	4 cut(s)	518, 755, 1570, 2014
BstACI	GRCGYC	1 cut(s)	1199
BstAUI	TGTACA	2 cut(s)	168, 2190
BstC8I	GCNNGC	7 cut(s)	340, 931, 977, 1000, 1022, 1095, 1386
BstDEI	CTNAG	5 cut(s)	1089, 1154, 1364, 1790, 1860
BstDSI	CCRYGG	1 cut(s)	969
BstF5I	GGATG	3 cut(s)	562, 1308, 1879
BstFNI	CGCG	1 cut(s)	1044
BstKTI	GATC	7 cut(s)	633, 889, 910, 927, 1468, 1803, 1965
BstMAI	GTCTC	1 cut(s)	393
BstMBI	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
BstMCI	CGRYCG	2 cut(s)	927, 1021
BstMWI	GCNNNNNNNGC	8 cut(s)	35, 92, 376, 773, 985, 1094, 1283, 2126
BstNI	CCWGG	3 cut(s)	393, 1028, 1300
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	7 cut(s)	264, 391, 855, 856, 889, 1026, 1298
BstSFI	CTRYAG	1 cut(s)	2104
BstSLI	GKGCMC	2 cut(s)	857, 2164
BstUI	CGCG	1 cut(s)	1044
BstV1I	GCAGC	4 cut(s)	975, 1715, 2104, 2166
BstV2I	GAAGAC	1 cut(s)	1966
BstX2I	RGATCY	2 cut(s)	886, 907
BstXI	CCANNNNNNTGG	2 cut(s)	431, 970
BstYI	RGATCY	2 cut(s)	886, 907
BstZI	CGGCCG	1 cut(s)	1018
BsuI	GTATCC	3 cut(s)	450, 752, 1062
BsuRI	GGCC	6 cut(s)	855, 962, 975, 998, 1020, 1181
BtgI	CCRYGG	1 cut(s)	969
BtsCI	GGATG	3 cut(s)	562, 1308, 1879
BtsI	GCAGTG	1 cut(s)	811
BtsIMutI	CAGTG	5 cut(s)	443, 811, 1496, 1566, 2193
BveI	ACCTGC	1 cut(s)	1619
Cac8I	GCNNGC	7 cut(s)	340, 931, 977, 1000, 1022, 1095, 1386
Cfr10I	RCCGGY	3 cut(s)	929, 1016, 1020
Cfr9I	CCCGGG	1 cut(s)	856
CseI	GACGC	3 cut(s)	589, 1188, 1396
Csp6I	GTAC	8 cut(s)	102, 169, 178, 538, 1593, 1898, 2112, 2191
CviAII	CATG	8 cut(s)	225, 343, 436, 970, 1084, 1753, 1966, 2007
CviQI	GTAC	8 cut(s)	102, 169, 178, 538, 1593, 1898, 2112, 2191
DdeI	CTNAG	5 cut(s)	1089, 1154, 1364, 1790, 1860
DpnI	GATC	7 cut(s)	632, 888, 909, 926, 1467, 1802, 1964
DpnII	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
DraI	TTTAAA	1 cut(s)	1881
EaeI	YGGCCR	1 cut(s)	1018
EagI	CGGCCG	1 cut(s)	1018
EciI	GGCGGA	2 cut(s)	1046, 1124
Ecl136II	GAGCTC	3 cut(s)	526, 767, 1036
EclXI	CGGCCG	1 cut(s)	1018
Eco130I	CCWWGG	5 cut(s)	71, 144, 541, 969, 1578
Eco24I	GRGCYC	5 cut(s)	125, 528, 769, 857, 1038
Eco47I	GGWCC	5 cut(s)	262, 395, 448, 982, 1985
Eco52I	CGGCCG	1 cut(s)	1018
Eco53kI	GAGCTC	3 cut(s)	526, 767, 1036
Eco57I	CTGAAG	3 cut(s)	1625, 1886, 2091
Eco88I	CYCGRG	1 cut(s)	856
EcoICRI	GAGCTC	3 cut(s)	526, 767, 1036
EcoO109I	RGGNCCY	1 cut(s)	853
EcoRII	CCWGG	3 cut(s)	391, 1026, 1298
EcoT14I	CCWWGG	5 cut(s)	71, 144, 541, 969, 1578
EcoT38I	GRGCYC	5 cut(s)	125, 528, 769, 857, 1038
ErhI	CCWWGG	5 cut(s)	71, 144, 541, 969, 1578
FaeI	CATG	8 cut(s)	228, 346, 439, 973, 1087, 1756, 1969, 2010
FaqI	GGGAC	1 cut(s)	1744
FatI	CATG	8 cut(s)	224, 342, 435, 969, 1083, 1752, 1965, 2006
FauI	CCCGC	1 cut(s)	1007
FauNDI	CATATG	2 cut(s)	1735, 2122
FbaI	TGATCA	2 cut(s)	630, 1800
Fnu4HI	GCNGC	6 cut(s)	989, 1042, 1172, 1704, 2118, 2155
FokI	GGATG	3 cut(s)	569, 1315, 1886
FriOI	GRGCYC	5 cut(s)	125, 528, 769, 857, 1038
Fsp4HI	GCNGC	6 cut(s)	989, 1042, 1172, 1704, 2118, 2155
FspBI	CTAG	2 cut(s)	533, 1619
GluI	GCNGC	6 cut(s)	989, 1042, 1172, 1704, 2118, 2155
GsaI	CCCAGC	3 cut(s)	90, 1068, 1743
GsuI	CTGGAG	1 cut(s)	896
HaeIII	GGCC	6 cut(s)	855, 962, 975, 998, 1020, 1181
HapII	CCGG	7 cut(s)	265, 857, 890, 930, 1017, 1021, 1182
HgaI	GACGC	3 cut(s)	589, 1188, 1396
Hin1I	GRCGYC	1 cut(s)	1199
Hin1II	CATG	8 cut(s)	228, 346, 439, 973, 1087, 1756, 1969, 2010
HincII	GTYRAC	2 cut(s)	79, 1312
HindII	GTYRAC	2 cut(s)	79, 1312
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	7 cut(s)	8, 546, 566, 1008, 1150, 1517, 1915
HpaI	GTTAAC	1 cut(s)	79
HpaII	CCGG	7 cut(s)	265, 857, 890, 930, 1017, 1021, 1182
HphI	GGTGA	4 cut(s)	408, 640, 1252, 2038
Hpy166II	GTNNAC	5 cut(s)	79, 504, 565, 1312, 2191
Hpy188I	TCNGA	8 cut(s)	210, 356, 571, 1007, 1149, 1204, 1861, 1914
Hpy8I	GTNNAC	5 cut(s)	79, 504, 565, 1312, 2191
Hpy99I	CGWCG	2 cut(s)	1049, 1204
HpyCH4III	ACNGT	4 cut(s)	518, 755, 1570, 2014
HpyCH4V	TGCA	8 cut(s)	113, 249, 338, 1277, 1435, 1529, 1628, 2120
HpyF10VI	GCNNNNNNNGC	8 cut(s)	35, 92, 376, 773, 985, 1094, 1283, 2126
HpyF3I	CTNAG	5 cut(s)	1089, 1154, 1364, 1790, 1860
Hsp92I	GRCGYC	1 cut(s)	1199
Hsp92II	CATG	8 cut(s)	228, 346, 439, 973, 1087, 1756, 1969, 2010
KroI	GCCGGC	2 cut(s)	929, 1020
KroNI	GCCGGC	2 cut(s)	931, 1022
Ksp22I	TGATCA	2 cut(s)	630, 1800
KspAI	GTTAAC	1 cut(s)	79
Kzo9I	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
LmnI	GCTCC	4 cut(s)	523, 920, 1033, 1957
Lsp1109I	GCAGC	4 cut(s)	975, 1715, 2104, 2166
LweI	GCATC	2 cut(s)	591, 654
MaeI	CTAG	2 cut(s)	533, 1619
MaeIII	GTNAC	3 cut(s)	414, 835, 1561
MalI	GATC	7 cut(s)	632, 888, 909, 926, 1467, 1802, 1964
MbiI	CCGCTC	1 cut(s)	1174
MboI	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
MfeI	CAATTG	3 cut(s)	770, 1512, 1524
MflI	RGATCY	2 cut(s)	886, 907
MhlI	GDGCHC	8 cut(s)	125, 528, 769, 857, 1038, 1077, 1191, 2164
MlyI	GAGTC	3 cut(s)	560, 1017, 1526
MmeI	TCCRAC	3 cut(s)	334, 1182, 1230
MroNI	GCCGGC	2 cut(s)	929, 1020
MslI	CAYNNNNRTG	3 cut(s)	662, 968, 1946
MspA1I	CMGCKG	3 cut(s)	988, 1706, 2157
MspI	CCGG	7 cut(s)	265, 857, 890, 930, 1017, 1021, 1182
MspR9I	CCNGG	7 cut(s)	266, 393, 857, 858, 891, 1028, 1300
MunI	CAATTG	3 cut(s)	770, 1512, 1524
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	3 cut(s)	393, 1028, 1300
MvnI	CGCG	1 cut(s)	1044
MwoI	GCNNNNNNNGC	8 cut(s)	35, 92, 376, 773, 985, 1094, 1283, 2126
NaeI	GCCGGC	2 cut(s)	931, 1022
NciI	CCSGG	4 cut(s)	266, 857, 858, 891
NcoI	CCATGG	1 cut(s)	969
NdeI	CATATG	2 cut(s)	1735, 2122
NdeII	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
NgoMIV	GCCGGC	2 cut(s)	929, 1020
NlaIII	CATG	8 cut(s)	228, 346, 439, 973, 1087, 1756, 1969, 2010
NlaIV	GGNNCC	6 cut(s)	855, 863, 888, 1025, 1356, 2161
NmeAIII	GCCGAG	1 cut(s)	974
NmuCI	GTSAC	2 cut(s)	414, 1561
NspI	RCATGY	1 cut(s)	439
OliI	CACNNNNGTG	1 cut(s)	1946
PctI	GAATGC	1 cut(s)	97
PdiI	GCCGGC	2 cut(s)	931, 1022
PfeI	GAWTC	4 cut(s)	8, 546, 1150, 1915
PflFI	GACNNNGTC	1 cut(s)	412
PfoI	TCCNGGA	1 cut(s)	391
PkrI	GCNGC	6 cut(s)	990, 1043, 1173, 1705, 2119, 2156
Ple19I	CGATCG	1 cut(s)	927
PleI	GAGTC	3 cut(s)	560, 1016, 1525
PpsI	GAGTC	3 cut(s)	560, 1016, 1525
Psp124BI	GAGCTC	3 cut(s)	528, 769, 1038
Psp6I	CCWGG	3 cut(s)	391, 1026, 1298
PspFI	CCCAGC	3 cut(s)	86, 1064, 1739
PspGI	CCWGG	3 cut(s)	391, 1026, 1298
PspN4I	GGNNCC	6 cut(s)	855, 863, 888, 1025, 1356, 2161
PspOMI	GGGCCC	1 cut(s)	853
PsuI	RGATCY	2 cut(s)	886, 907
PsyI	GACNNNGTC	1 cut(s)	412
PvuI	CGATCG	1 cut(s)	927
PvuII	CAGCTG	2 cut(s)	988, 1706
RgaI	GCGATCGC	1 cut(s)	927
RsaI	GTAC	8 cut(s)	103, 170, 179, 539, 1594, 1899, 2113, 2192
RsaNI	GTAC	8 cut(s)	102, 169, 178, 538, 1593, 1898, 2112, 2191
RseI	CAYNNNNRTG	3 cut(s)	662, 968, 1946
SacI	GAGCTC	3 cut(s)	528, 769, 1038
SatI	GCNGC	6 cut(s)	989, 1042, 1172, 1704, 2118, 2155
Sau3AI	GATC	7 cut(s)	630, 886, 907, 924, 1465, 1800, 1962
ScaI	AGTACT	1 cut(s)	179
SchI	GAGTC	3 cut(s)	560, 1017, 1526
ScrFI	CCNGG	7 cut(s)	266, 393, 857, 858, 891, 1028, 1300
SduI	GDGCHC	8 cut(s)	125, 528, 769, 857, 1038, 1077, 1191, 2164
SfaAI	GCGATCGC	1 cut(s)	927
SfaNI	GCATC	2 cut(s)	591, 654
SfcI	CTRYAG	1 cut(s)	2104
SgfI	GCGATCGC	1 cut(s)	927
SinI	GGWCC	5 cut(s)	262, 395, 448, 982, 1985
SmaI	CCCGGG	1 cut(s)	858
SmiMI	CAYNNNNRTG	3 cut(s)	662, 968, 1946
SmlI	CTYRAG	2 cut(s)	1226, 1369
SmoI	CTYRAG	2 cut(s)	1226, 1369
SpeI	ACTAGT	1 cut(s)	1618
SsiI	CCGC	8 cut(s)	966, 1000, 1031, 1042, 1109, 1172, 1265, 2157
SspI	AATATT	2 cut(s)	238, 1462
SspMI	CTAG	2 cut(s)	533, 1619
SstI	GAGCTC	3 cut(s)	528, 769, 1038
StyD4I	CCNGG	7 cut(s)	264, 391, 855, 856, 889, 1026, 1298
StyI	CCWWGG	5 cut(s)	71, 144, 541, 969, 1578
TaaI	ACNGT	4 cut(s)	518, 755, 1570, 2014
TaqI	TCGA	4 cut(s)	174, 407, 1952, 1995
TatI	WGTACW	5 cut(s)	101, 168, 177, 1897, 2190
TauI	GCSGC	2 cut(s)	1044, 1174
TfiI	GAWTC	4 cut(s)	8, 546, 1150, 1915
TscAI	CASTG	5 cut(s)	450, 811, 1503, 1573, 2193
TseFI	GTSAC	2 cut(s)	414, 1561
TseI	GCWGC	4 cut(s)	988, 1703, 2117, 2154
Tsp45I	GTSAC	2 cut(s)	414, 1561
TspDTI	ATGAA	7 cut(s)	213, 272, 488, 726, 860, 1072, 2053
TspMI	CCCGGG	1 cut(s)	856
TspRI	CASTG	5 cut(s)	450, 811, 1503, 1573, 2193
Tth111I	GACNNNGTC	1 cut(s)	412
VpaK11BI	GGWCC	5 cut(s)	262, 395, 448, 982, 1985
XapI	RAATTY	2 cut(s)	163, 895
XbaI	TCTAGA	1 cut(s)	532
XceI	RCATGY	1 cut(s)	439
XcmI	CCANNNNNNNNNTGG	1 cut(s)	976
XmaI	CCCGGG	1 cut(s)	856
XspI	CTAG	2 cut(s)	533, 1619
ZrmI	AGTACT	1 cut(s)	179

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.