Rw5G013860

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Forward (+)
16363482 .. 16366243
2762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G013860.1

Sequence Viewer

Length: 1704 bp
ATGGCGGATGTGAAGATGGCTGATGCTGAGACGTTTGCTTTCCAGACCGAGATCAACCAGCTTCTGAGCTTGATCATCAATACGTTCTACAGCAACAAGGAGATTTTTCTTCAATTCGAGAGTCTTACGGATAAGAGCAAGCTTGATGCTCAGCCGGAGCTTTTCATCAGGATTGTTCCGGATAAGACCAACAATACTCTCTCCATCATTGATAGCGGGATCGGCATGATTAAAGCAGATTTGGTGAACAATATGGGCACAATTGCAAGGTCTGGAACCAAGGAGTTTACGGAAGCATTGGCTTCTGGAGTTTCTGATGTGAGCATGATTGGACAGTTTGGTGTTGGTTTCTATTCGGCATATCTTGTTGCAGAGAAGGTCATTGTGACTACAAAGCACAATGATGATGAGCAATACATCTGGGAGTCTCAGGCTGGTGGTTCATTCACAGTGACAAGGGATGTCAATGGCGAGCAGCTTGGCAGGGGCACCAAGATCACTCTCTTCCTCAAGGAGGACCAGTTGGAATACTTGGAAGAGAGGAGGATCAAAGACCTTGTGAAGAAGCATTCCGAATTTATCAGCTATCCCATCTACTTGTGGACTGAGAAGACGACTGAAAAGGAGATCTGTGATGATGAAGAGGGCGAACCCAAGAAGGAAGAGAAAGGAGATATTGAGGAAGTTGATGAGGACAAGGAGAAAGAAGGGACGAAGAAGAAGAAGAAGATCAAGGAAGTTTCTCATGACTTGACCAATGATTGGGAGGAACACCTTGCTGTGAAGTACTTCTCTGTGGAAGGACAGCTTGAATTCAAACTTCTCTGTGGAAGGACATATCTTGGATTTGTCAAGGGTGCTGTGGACTCCGATGACTTGCCACTCAACATTTCTCGTGAGATGCTTCAACAGAACAAGATCCTGAAGGTGATCAGGAAGAACCTTATGAAGAAGTGCATTGAGATGTTGAATGGGATTGCTGAGAACAAAGAGGATTATTTGGGGATTCATGAGGACAGCCAGAACAGGGCCAAGTTGGCTGACCTTCTCCGATACCACTCCACCAACAGCGGTGACGATCTCACAAGCTTGAAGGACTATAGCAAGAAGGCAGTGGAGAACTTGCCATTCTTGGAATGCCTAAAGAAGAAGGGATATGAAATTCTTTTCATGGAGTATGATGGGAAGAAGCTCATGTCTGCTACAAAGGAAGGTCTGAAGCTTGACGATGAAACTGAGGAAGAGAAGAAGAAGAAGTCTTTTGAGAATCTTTGCAAGACAATTAAAGACATCTTGGGAGACAGGGTTGAGAAGGTGGTTGTGTCCGATAGAATTGTCAACTCACCTTGCTGCTTGGTCACTGGTGAATATGGATGGAGTGCAAACATGGAGAGGATTATGAAGGCTCAGGCACTCAGGGACAACAGCATGGGTGCTCACATGTCCAGCAAGAAGACCATGGAAATCAACCCTGACAATGGCATCATGGAGGAGCTGAGGAAGAGAGCCAAAGCTGACAAAAATGACAAGTCCGTCAAGGACCTTGTGCTGCTGCTGTTTGAGACAGCTCTGCTGACATCTGGATTCAGCCTTGATGAGCCGAAGCTGGGGCTTAGCATTGACGAAGACGAGACTGTTGAGGATGCGGACATGCCTGAGCTGGAGGATGCGGCTGAGGAGAGCAAAATGGAGGAAGTGGACTAA

Protein Analysis

567

Amino Acids

64.4

Weight (kDa)

4.85

Isoelectric Point (pI)

34.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HATPase_c_3 PF13589 58 - 138 7.3e-07 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
HSP90 PF00183 176 - 250 1.4e-15 Hsp90 protein
HSP90 PF00183 279 - 535 1.2e-94 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1532
AccB1I GGYRCC 1 cut(s) 488
AccB7I CCANNNNNTGG 1 cut(s) 762
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 5 cut(s) 5, 216, 1071, 1646, 1670
AclWI GGATC 3 cut(s) 227, 554, 913
AcsI RAATTY 3 cut(s) 575, 812, 1161
AcuI CTGAAG 2 cut(s) 944, 1238
AfaI GTAC 1 cut(s) 788
AfiI CCNNNNNNNGG 5 cut(s) 514, 762, 1027, 1478, 1607
AflIII ACRYGT 1 cut(s) 1440
AgsI TTSAA 6 cut(s) 113, 812, 817, 908, 970, 1093
Alw21I GWGCWC 1 cut(s) 1438
Alw26I GTCTC 5 cut(s) 23, 432, 1293, 1556, 1625
AlwI GGATC 3 cut(s) 227, 554, 913
AlwNI CAGNNNCTG 1 cut(s) 64
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 1 cut(s) 1029
ApeKI GCWGC 4 cut(s) 475, 1350, 1549, 1552
ApoI RAATTY 3 cut(s) 575, 812, 1161
Asp700I GAANNNNTTC 1 cut(s) 788
AspS9I GGNCC 3 cut(s) 517, 1029, 1540
AsuHPI GGTGA 5 cut(s) 256, 940, 1085, 1335, 1376
AvaII GGWCC 2 cut(s) 517, 1540
BaeGI GKGCMC 2 cut(s) 260, 491
BanI GGYRCC 1 cut(s) 488
BauI CACGAG 1 cut(s) 894
BbsI GAAGAC 3 cut(s) 617, 1460, 1632
Bbv12I GWGCWC 1 cut(s) 1438
BbvCI CCTCAGC 2 cut(s) 1496, 1674
BbvI GCAGC 4 cut(s) 487, 1337, 1536, 1539
BccI CCATC 5 cut(s) 10, 212, 599, 1175, 1368
BclI TGATCA 2 cut(s) 72, 930
BcoDI GTCTC 5 cut(s) 23, 432, 1293, 1556, 1625
BfmI CTRYAG 2 cut(s) 88, 1099
BglI GCCNNNNNGGC 1 cut(s) 1037
BglII AGATCT 1 cut(s) 627
BisI GCNGC 5 cut(s) 476, 1351, 1550, 1553, 1671
BlpI GCTNAGC 2 cut(s) 150, 1613
BlsI GCNGC 5 cut(s) 477, 1352, 1551, 1554, 1672
BmcAI AGTACT 1 cut(s) 788
Bme18I GGWCC 2 cut(s) 517, 1540
BmgT120I GGNCC 3 cut(s) 517, 1029, 1540
BmiI GGNNCC 2 cut(s) 277, 490
BmsI GCATC 6 cut(s) 13, 136, 891, 1491, 1633, 1657
BpiI GAAGAC 3 cut(s) 617, 1460, 1632
BpmI CTGGAG 2 cut(s) 327, 1682
Bpu10I CCTNAGC 4 cut(s) 1407, 1496, 1656, 1674
Bpu1102I GCTNAGC 2 cut(s) 150, 1613
BpuEI CTTGAG 1 cut(s) 494
BsaJI CCNNGG 2 cut(s) 279, 1458
BsaWI WCCGGW 1 cut(s) 178
BsaXI ACNNNNNCTCC 4 cut(s) 506, 536, 1290, 1320
Bsc4I CCNNNNNNNGG 5 cut(s) 514, 762, 1027, 1478, 1607
Bse1I ACTGG 2 cut(s) 520, 1366
BseAI TCCGGA 1 cut(s) 178
BseDI CCNNGG 2 cut(s) 279, 1458
BseGI GGATG 5 cut(s) 13, 466, 1379, 1648, 1672
BseLI CCNNNNNNNGG 5 cut(s) 514, 762, 1027, 1478, 1607
BseNI ACTGG 2 cut(s) 520, 1366
BseRI GAGGAG 3 cut(s) 556, 1505, 1691
BseSI GKGCMC 2 cut(s) 260, 491
BseXI GCAGC 4 cut(s) 487, 1337, 1536, 1539
BseYI CCCAGC 1 cut(s) 1606
BshFI GGCC 1 cut(s) 1031
BshNI GGYRCC 1 cut(s) 488
BsiHKAI GWGCWC 1 cut(s) 1438
BsiSI CCGG 2 cut(s) 155, 179
BslFI GGGAC 2 cut(s) 724, 1433
BslI CCNNNNNNNGG 5 cut(s) 514, 762, 1027, 1478, 1607
BsmAI GTCTC 5 cut(s) 23, 432, 1293, 1556, 1625
BsmBI CGTCTC 1 cut(s) 23
BsmFI GGGAC 2 cut(s) 724, 1433
BsmI GAATGC 2 cut(s) 568, 1142
BsnI GGCC 1 cut(s) 1031
Bsp1286I GDGCHC 3 cut(s) 260, 491, 1438
Bsp13I TCCGGA 1 cut(s) 178
Bsp1720I GCTNAGC 2 cut(s) 150, 1613
Bsp19I CCATGG 1 cut(s) 1458
BspACI CCGC 5 cut(s) 5, 216, 1071, 1646, 1670
BspANI GGCC 1 cut(s) 1031
BspEI TCCGGA 1 cut(s) 178
BspHI TCATGA 2 cut(s) 745, 1009
BspLI GGNNCC 2 cut(s) 277, 490
BspPI GGATC 3 cut(s) 227, 554, 913
BspT107I GGYRCC 1 cut(s) 488
BsrI ACTGG 2 cut(s) 520, 1366
BssECI CCNNGG 2 cut(s) 279, 1458
BssSI CACGAG 1 cut(s) 894
BssT1I CCWWGG 2 cut(s) 279, 1458
Bst2BI CACGAG 1 cut(s) 894
Bst4CI ACNGT 3 cut(s) 336, 451, 1636
Bst6I CTCTTC 6 cut(s) 509, 531, 636, 657, 1236, 1496
BstC8I GCNNGC 2 cut(s) 140, 473
BstDSI CCRYGG 1 cut(s) 1458
BstENI CCTNNNNNAGG 1 cut(s) 512
BstF5I GGATG 5 cut(s) 13, 466, 1379, 1648, 1672
BstMAI GTCTC 5 cut(s) 23, 432, 1293, 1556, 1625
BstMWI GCNNNNNNNGC 2 cut(s) 222, 1037
BstNSI RCATGY 2 cut(s) 1444, 1654
BstSFI CTRYAG 2 cut(s) 88, 1099
BstSLI GKGCMC 2 cut(s) 260, 491
BstV1I GCAGC 4 cut(s) 487, 1337, 1536, 1539
BstV2I GAAGAC 3 cut(s) 617, 1460, 1632
BstX2I RGATCY 2 cut(s) 627, 918
BstYI RGATCY 2 cut(s) 627, 918
BsuRI GGCC 1 cut(s) 1031
BtgI CCRYGG 1 cut(s) 1458
BtsCI GGATG 5 cut(s) 13, 466, 1379, 1648, 1672
BtsI GCAGTG 1 cut(s) 1119
BtsIMutI CAGTG 3 cut(s) 456, 1119, 1359
Cac8I GCNNGC 2 cut(s) 140, 473
CaiI CAGNNNCTG 1 cut(s) 64
CciI TCATGA 2 cut(s) 745, 1009
Cfr13I GGNCC 3 cut(s) 517, 1029, 1540
Csp6I GTAC 1 cut(s) 787
CviQI GTAC 1 cut(s) 787
DrdI GACNNNNNNGTC 1 cut(s) 1532
DseDI GACNNNNNNGTC 1 cut(s) 1532
Eam1104I CTCTTC 6 cut(s) 509, 531, 636, 657, 1236, 1496
EarI CTCTTC 6 cut(s) 509, 531, 636, 657, 1236, 1496
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 279, 1458
Eco47I GGWCC 2 cut(s) 517, 1540
Eco57I CTGAAG 2 cut(s) 944, 1238
EcoNI CCTNNNNNAGG 1 cut(s) 512
EcoO109I RGGNCCY 1 cut(s) 1540
EcoRI GAATTC 1 cut(s) 812
EcoT14I CCWWGG 2 cut(s) 279, 1458
ErhI CCWWGG 2 cut(s) 279, 1458
Esp3I CGTCTC 1 cut(s) 23
FalI AAGNNNNNCTT 2 cut(s) 792, 824
FaqI GGGAC 2 cut(s) 724, 1433
FauI CCCGC 1 cut(s) 209
FbaI TGATCA 2 cut(s) 72, 930
Fnu4HI GCNGC 5 cut(s) 476, 1351, 1550, 1553, 1671
FokI GGATG 5 cut(s) 20, 473, 1386, 1655, 1679
Fsp4HI GCNGC 5 cut(s) 476, 1351, 1550, 1553, 1671
GluI GCNGC 5 cut(s) 476, 1351, 1550, 1553, 1671
GsaI CCCAGC 1 cut(s) 1610
GsuI CTGGAG 2 cut(s) 327, 1682
HaeIII GGCC 1 cut(s) 1031
HapII CCGG 2 cut(s) 155, 179
HincII GTYRAC 1 cut(s) 1339
HindII GTYRAC 1 cut(s) 1339
HindIII AAGCTT 3 cut(s) 140, 1087, 1220
HinfI GANTC 6 cut(s) 121, 425, 866, 1006, 1267, 1584
HpaII CCGG 2 cut(s) 155, 179
HphI GGTGA 5 cut(s) 256, 940, 1085, 1335, 1376
Hpy166II GTNNAC 6 cut(s) 247, 288, 603, 865, 1339, 1699
Hpy188I TCNGA 7 cut(s) 66, 316, 574, 871, 1052, 1218, 1327
Hpy8I GTNNAC 6 cut(s) 247, 288, 603, 865, 1339, 1699
HpyCH4III ACNGT 3 cut(s) 336, 451, 1636
HpyCH4IV ACGT 2 cut(s) 32, 83
HpyCH4V TGCA 5 cut(s) 266, 371, 957, 1275, 1382
HpyF10VI GCNNNNNNNGC 2 cut(s) 222, 1037
HpySE526I ACGT 2 cut(s) 32, 83
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 2 cut(s) 72, 930
LmnI GCTCC 2 cut(s) 157, 1492
Lsp1109I GCAGC 4 cut(s) 487, 1337, 1536, 1539
LweI GCATC 6 cut(s) 13, 136, 891, 1491, 1633, 1657
MaeII ACGT 2 cut(s) 32, 83
MaeIII GTNAC 4 cut(s) 385, 451, 1073, 1357
MfeI CAATTG 1 cut(s) 261
MflI RGATCY 2 cut(s) 627, 918
MhlI GDGCHC 3 cut(s) 260, 491, 1438
MluCI AATT 7 cut(s) 113, 261, 575, 812, 1161, 1281, 1332
MlyI GAGTC 3 cut(s) 130, 434, 860
MmeI TCCRAC 1 cut(s) 504
MroI TCCGGA 1 cut(s) 178
MroXI GAANNNNTTC 1 cut(s) 788
MseI TTAA 2 cut(s) 231, 1284
MslI CAYNNNNRTG 2 cut(s) 402, 962
MspA1I CMGCKG 1 cut(s) 1071
MspI CCGG 2 cut(s) 155, 179
MunI CAATTG 1 cut(s) 261
Mva1269I GAATGC 2 cut(s) 568, 1142
MwoI GCNNNNNNNGC 2 cut(s) 222, 1037
NcoI CCATGG 1 cut(s) 1458
NlaIV GGNNCC 2 cut(s) 277, 490
NmuCI GTSAC 4 cut(s) 385, 451, 1073, 1357
NspI RCATGY 2 cut(s) 1444, 1654
PagI TCATGA 2 cut(s) 745, 1009
PciI ACATGT 1 cut(s) 1440
PctI GAATGC 2 cut(s) 568, 1142
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 3 cut(s) 1006, 1267, 1584
PflMI CCANNNNNTGG 1 cut(s) 762
PkrI GCNGC 5 cut(s) 477, 1352, 1551, 1554, 1672
PleI GAGTC 3 cut(s) 129, 433, 860
PpsI GAGTC 3 cut(s) 129, 433, 860
PpuMI RGGWCCY 1 cut(s) 1540
PscI ACATGT 1 cut(s) 1440
Psp5II RGGWCCY 1 cut(s) 1540
PspFI CCCAGC 1 cut(s) 1606
PspN4I GGNNCC 2 cut(s) 277, 490
PspPI GGNCC 3 cut(s) 517, 1029, 1540
PspPPI RGGWCCY 1 cut(s) 1540
PstNI CAGNNNCTG 1 cut(s) 64
PsuI RGATCY 2 cut(s) 627, 918
RsaI GTAC 1 cut(s) 788
RsaNI GTAC 1 cut(s) 787
RseI CAYNNNNRTG 2 cut(s) 402, 962
SaqAI TTAA 2 cut(s) 231, 1284
SatI GCNGC 5 cut(s) 476, 1351, 1550, 1553, 1671
Sau96I GGNCC 3 cut(s) 517, 1029, 1540
ScaI AGTACT 1 cut(s) 788
SchI GAGTC 3 cut(s) 130, 434, 860
SduI GDGCHC 3 cut(s) 260, 491, 1438
SfaNI GCATC 6 cut(s) 13, 136, 891, 1491, 1633, 1657
SfcI CTRYAG 2 cut(s) 88, 1099
SinI GGWCC 2 cut(s) 517, 1540
SmiMI CAYNNNNRTG 2 cut(s) 402, 962
SmlI CTYRAG 1 cut(s) 509
SmoI CTYRAG 1 cut(s) 509
Sse9I AATT 7 cut(s) 113, 261, 575, 812, 1161, 1281, 1332
SsiI CCGC 5 cut(s) 5, 216, 1071, 1646, 1670
StyI CCWWGG 2 cut(s) 279, 1458
TaaI ACNGT 3 cut(s) 336, 451, 1636
TaiI ACGT 2 cut(s) 35, 86
TaqI TCGA 1 cut(s) 117
TaqII GACCGA 1 cut(s) 62
TasI AATT 7 cut(s) 113, 261, 575, 812, 1161, 1281, 1332
TatI WGTACW 1 cut(s) 786
TauI GCSGC 1 cut(s) 1673
TfiI GAWTC 3 cut(s) 1006, 1267, 1584
Tru1I TTAA 2 cut(s) 231, 1284
Tru9I TTAA 2 cut(s) 231, 1284
TscAI CASTG 3 cut(s) 456, 1119, 1366
TseFI GTSAC 4 cut(s) 385, 451, 1073, 1357
TseI GCWGC 4 cut(s) 475, 1350, 1549, 1552
Tsp45I GTSAC 4 cut(s) 385, 451, 1073, 1357
TspDTI ATGAA 9 cut(s) 154, 432, 654, 962, 998, 1159, 1173, 1245, 1415
TspGWI ACGGA 3 cut(s) 143, 305, 1522
TspRI CASTG 3 cut(s) 456, 1119, 1366
Van91I CCANNNNNTGG 1 cut(s) 762
VpaK11BI GGWCC 2 cut(s) 517, 1540
XagI CCTNNNNNAGG 1 cut(s) 512
XapI RAATTY 3 cut(s) 575, 812, 1161
XceI RCATGY 2 cut(s) 1444, 1654
XmnI GAANNNNTTC 1 cut(s) 788
ZrmI AGTACT 1 cut(s) 788
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.