Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

16388810 .. 16389130

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG155600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGGAGAGGATTATGAAGGCTCAGGCACTCAGGGACAACAGCATGGGTGCTTACATGTCCAGCAAGAAGACCATGGAAATCAACCCTGACAATGGCATCATGGAGGAGCTGAGGAAGAGAGCCAAAGCTGACAAAAATGACAAGTCCGTCAAGGACCTTGTGCTGCTGCTGCTGTTTGAGACAGCTCTGCTGACATCTGGATTCAGCCTTGATGAGCCGAAGCTGGGGCTTAGCATTGACGAAGACGAGACTGTTGAGGATGTGGACATGCCTGAGCTGGAGGATGCGGCTGAGAAGAGCAAAATGAAGGAAGTGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

106

Amino Acids

11.94

Weight (kDa)

4.56

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	1 - 75	1.7e-25	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	146
AciI	CCGC	1 cut(s)	287
AfiI	CCNNNNNNNGG	2 cut(s)	92, 224
AflIII	ACRYGT	1 cut(s)	54
AluBI	AGCT	5 cut(s)	109, 128, 185, 223, 277
AluI	AGCT	5 cut(s)	109, 128, 185, 223, 277
Alw26I	GTCTC	2 cut(s)	173, 242
ApeKI	GCWGC	3 cut(s)	163, 166, 169
AspS9I	GGNCC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	154
BbsI	GAAGAC	2 cut(s)	74, 249
BbvCI	CCTCAGC	1 cut(s)	110
BbvI	GCAGC	3 cut(s)	150, 153, 156
BcoDI	GTCTC	2 cut(s)	173, 242
BisI	GCNGC	4 cut(s)	164, 167, 170, 288
BlpI	GCTNAGC	1 cut(s)	230
BlsI	GCNGC	4 cut(s)	165, 168, 171, 289
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmsI	GCATC	2 cut(s)	105, 274
BpiI	GAAGAC	2 cut(s)	74, 249
BpmI	CTGGAG	1 cut(s)	299
Bpu10I	CCTNAGC	3 cut(s)	21, 110, 273
Bpu1102I	GCTNAGC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	72
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 224
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	265, 289
BseLI	CCNNNNNNNGG	2 cut(s)	92, 224
BseMII	CTCAG	5 cut(s)	35, 43, 101, 264, 282
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	3 cut(s)	150, 153, 156
BseYI	CCCAGC	1 cut(s)	223
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	92, 224
BsmAI	GTCTC	2 cut(s)	173, 242
BsmFI	GGGAC	1 cut(s)	47
Bsp1720I	GCTNAGC	1 cut(s)	230
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	287
BspCNI	CTCAG	5 cut(s)	34, 42, 102, 265, 283
BspQI	GCTCTTC	1 cut(s)	290
BssECI	CCNNGG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	2 cut(s)	110, 290
BstDEI	CTNAG	6 cut(s)	21, 29, 110, 230, 273, 291
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	265, 289
BstMAI	GTCTC	2 cut(s)	173, 242
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNSI	RCATGY	2 cut(s)	58, 271
BstV1I	GCAGC	3 cut(s)	150, 153, 156
BstV2I	GAAGAC	2 cut(s)	74, 249
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	265, 289
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	5 cut(s)	43, 55, 73, 100, 268
DdeI	CTNAG	6 cut(s)	21, 29, 110, 230, 273, 291
DrdI	GACNNNNNNGTC	1 cut(s)	146
DseDI	GACNNNNNNGTC	1 cut(s)	146
Eam1104I	CTCTTC	2 cut(s)	110, 290
EarI	CTCTTC	2 cut(s)	110, 290
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	154
EcoO109I	RGGNCCY	1 cut(s)	154
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	46, 58, 76, 103, 271
FaiI	YATR	6 cut(s)	14, 44, 56, 74, 101, 269
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	5 cut(s)	42, 54, 72, 99, 267
Fnu4HI	GCNGC	4 cut(s)	164, 167, 170, 288
FokI	GGATG	2 cut(s)	272, 296
Fsp4HI	GCNGC	4 cut(s)	164, 167, 170, 288
GluI	GCNGC	4 cut(s)	164, 167, 170, 288
GsaI	CCCAGC	1 cut(s)	227
GsuI	CTGGAG	1 cut(s)	299
Hin1II	CATG	5 cut(s)	46, 58, 76, 103, 271
HinfI	GANTC	1 cut(s)	201
Hpy166II	GTNNAC	2 cut(s)	265, 316
Hpy188III	TCNNGA	1 cut(s)	198
Hpy8I	GTNNAC	2 cut(s)	265, 316
HpyAV	CCTTC	2 cut(s)	10, 301
HpyCH4III	ACNGT	1 cut(s)	253
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	6 cut(s)	21, 29, 110, 230, 273, 291
Hsp92II	CATG	5 cut(s)	46, 58, 76, 103, 271
LguI	GCTCTTC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	106
LpnPI	CCDG	8 cut(s)	8, 16, 73, 99, 183, 209, 263, 285
Lsp1109I	GCAGC	3 cut(s)	150, 153, 156
LweI	GCATC	2 cut(s)	105, 274
MboII	GAAGA	4 cut(s)	79, 127, 254, 307
MnlI	CCTC	4 cut(s)	97, 105, 250, 274
MwoI	GCNNNNNNNGC	1 cut(s)	169
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	5 cut(s)	46, 58, 76, 103, 271
NspI	RCATGY	2 cut(s)	58, 271
PciI	ACATGT	1 cut(s)	54
PciSI	GCTCTTC	1 cut(s)	290
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	165, 168, 171, 289
PpuMI	RGGWCCY	1 cut(s)	154
PscI	ACATGT	1 cut(s)	54
Psp5II	RGGWCCY	1 cut(s)	154
PspFI	CCCAGC	1 cut(s)	223
PspPI	GGNCC	1 cut(s)	154
PspPPI	RGGWCCY	1 cut(s)	154
SapI	GCTCTTC	1 cut(s)	290
SatI	GCNGC	4 cut(s)	164, 167, 170, 288
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	6 cut(s)	111, 130, 159, 187, 225, 279
SfaNI	GCATC	2 cut(s)	105, 274
SinI	GGWCC	1 cut(s)	154
SsiI	CCGC	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	1 cut(s)	253
TauI	GCSGC	1 cut(s)	290
TfiI	GAWTC	1 cut(s)	201
TseI	GCWGC	3 cut(s)	163, 166, 169
TspDTI	ATGAA	2 cut(s)	29, 320
TspGWI	ACGGA	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	2 cut(s)	58, 271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.