Rmu_sc0039495.1_g000001

heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0039495.1
OG0000335
Physical Location & Seq
Forward (+)
1 .. 733
733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0039495.1_g000001.1.cds

Sequence Viewer

Length: 733 bp
ggaggtttcgaaggaggagtattgctctttctacaagagccttaccaatgattgggaagaccctcttgcttggaagcatttcgctgtggaaggccagctcgagttcaagtcaatcctcttcttgcctaaaagagcaccttttgatctgtttgacacgaggaagaagccgaacaacatcaagctttatgtgcgcaaggtgtttataatggacaattgtgaggagctgatgccggagtaccttggatttgtgaagggcgttgtggattctgatgatctgccgctcaacatttcgcgtgagatgctgcaacagaacaagattctcaaggtgattaggaagaatctggtgaagaagtgcctcgagatgttcaatgaggttgcagaaaataaggaggagtatactaaattctatgaggctttctcgaagaacctcaagttgggtatccatgaggacagccagaacagggcaaagctggctgatttgctcaggtactactccaccaaaagcactgatgagatgaccagctttaaggactatgtcacgaggatgaaggagggccagaagaacatatactacattaccggtgagagcaagaaggctgtcgagaactcgccgtttctggagaggcttaagaagaagggatatgaggtgttgtttatggttgagccgattgatgagtatgctgttggacagttgaaggagtatgatgggaagaagcttgtgtctgtaacgaaa

Protein Analysis

244

Amino Acids

28.8

Weight (kDa)

8.24

Isoelectric Point (pI)

36.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
Acc16I TGCGCA 1 cut(s) 192
AccB7I CCANNNNNTGG 1 cut(s) 52
AccBSI CCGCTC 1 cut(s) 281
AccI GTMKAC 1 cut(s) 396
AccII CGCG 1 cut(s) 293
AciI CCGC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 402
AfaI GTAC 2 cut(s) 237, 489
AfiI CCNNNNNNNGG 3 cut(s) 52, 434, 461
AflII CTTAAG 1 cut(s) 627
AgeI ACCGGT 1 cut(s) 579
AgsI TTSAA 3 cut(s) 107, 368, 695
AjuI GAANNNNNNNTTGG 2 cut(s) 417, 449
AluBI AGCT 6 cut(s) 98, 182, 224, 470, 523, 716
AluI AGCT 6 cut(s) 98, 182, 224, 470, 523, 716
Alw21I GWGCWC 1 cut(s) 137
Ama87I CYCGRG 2 cut(s) 99, 357
AoxI GGCC 2 cut(s) 92, 554
ApeKI GCWGC 1 cut(s) 302
ApoI RAATTY 1 cut(s) 402
AsiGI ACCGGT 1 cut(s) 579
Asp700I GAANNNNTTC 1 cut(s) 78
AspLEI GCGC 1 cut(s) 193
AspS9I GGNCC 1 cut(s) 554
AsuHPI GGTGA 3 cut(s) 338, 356, 594
AsuII TTCGAA 1 cut(s) 9
AvaI CYCGRG 2 cut(s) 99, 357
BarI GAAGNNNNNNTAC 2 cut(s) 552, 584
BauI CACGAG 2 cut(s) 155, 539
BbsI GAAGAC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 137
BbvI GCAGC 1 cut(s) 289
BccI CCATC 1 cut(s) 699
BceAI ACGGC 1 cut(s) 596
BciVI GTATCC 1 cut(s) 450
BfrI CTTAAG 1 cut(s) 627
BfuI GTATCC 1 cut(s) 450
BisI GCNGC 2 cut(s) 279, 303
BlsI GCNGC 2 cut(s) 280, 304
BmeT110I CYCGRG 2 cut(s) 99, 357
BmgT120I GGNCC 1 cut(s) 554
BmsI GCATC 2 cut(s) 217, 289
BpiI GAAGAC 1 cut(s) 64
BplI GAGNNNNNCTC 4 cut(s) 9, 41, 402, 434
BpmI CTGGAG 1 cut(s) 639
Bpu10I CCTNAGC 1 cut(s) 483
Bpu14I TTCGAA 1 cut(s) 9
BpuEI CTTGAG 2 cut(s) 306, 414
BsaJI CCNNGG 1 cut(s) 239
BsaWI WCCGGW 1 cut(s) 579
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 434, 461
Bse118I RCCGGY 1 cut(s) 579
BseDI CCNNGG 1 cut(s) 239
BseGI GGATG 1 cut(s) 550
BseLI CCNNNNNNNGG 3 cut(s) 52, 434, 461
BseMII CTCAG 1 cut(s) 497
BseRI GAGGAG 3 cut(s) 30, 234, 405
BseXI GCAGC 1 cut(s) 289
Bsh1236I CGCG 1 cut(s) 293
BshFI GGCC 2 cut(s) 94, 556
BshTI ACCGGT 1 cut(s) 579
BsiHKAI GWGCWC 1 cut(s) 137
BsiHKCI CYCGRG 2 cut(s) 99, 357
BsiSI CCGG 2 cut(s) 231, 580
BslI CCNNNNNNNGG 3 cut(s) 52, 434, 461
BsnI GGCC 2 cut(s) 94, 556
BsoBI CYCGRG 2 cut(s) 99, 357
Bsp119I TTCGAA 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 137
Bsp143I GATC 2 cut(s) 143, 272
BspACI CCGC 1 cut(s) 279
BspANI GGCC 2 cut(s) 94, 556
BspCNI CTCAG 1 cut(s) 496
BspFNI CGCG 1 cut(s) 293
BspT104I TTCGAA 1 cut(s) 9
BspTI CTTAAG 1 cut(s) 627
BsrBI CCGCTC 1 cut(s) 281
BsrFI RCCGGY 1 cut(s) 579
BssAI RCCGGY 1 cut(s) 579
BssECI CCNNGG 1 cut(s) 239
BssMI GATC 2 cut(s) 143, 272
BssNAI GTATAC 1 cut(s) 397
BssSI CACGAG 2 cut(s) 155, 539
BssT1I CCWWGG 1 cut(s) 239
Bst1107I GTATAC 1 cut(s) 397
Bst2BI CACGAG 2 cut(s) 155, 539
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 1 cut(s) 123
BstAFI CTTAAG 1 cut(s) 627
BstBI TTCGAA 1 cut(s) 9
BstC8I GCNNGC 2 cut(s) 96, 472
BstDEI CTNAG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 293
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 2 cut(s) 146, 275
BstMBI GATC 2 cut(s) 143, 272
BstMWI GCNNNNNNNGC 3 cut(s) 188, 299, 471
BstUI CGCG 1 cut(s) 293
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 64
BstZ17I GTATAC 1 cut(s) 397
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 2 cut(s) 94, 556
BtsCI GGATG 1 cut(s) 550
BtsIMutI CAGTG 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 96, 472
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 1 cut(s) 579
Cfr13I GGNCC 1 cut(s) 554
Csp6I GTAC 2 cut(s) 236, 488
CspAI ACCGGT 1 cut(s) 579
CviAII CATG 1 cut(s) 444
CviQI GTAC 2 cut(s) 236, 488
DdeI CTNAG 1 cut(s) 483
DpnI GATC 2 cut(s) 145, 274
DpnII GATC 2 cut(s) 143, 272
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 239
Eco88I CYCGRG 2 cut(s) 99, 357
EcoT14I CCWWGG 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 239
FaeI CATG 1 cut(s) 447
FalI AAGNNNNNCTT 4 cut(s) 49, 81, 122, 154
FatI CATG 1 cut(s) 443
FblI GTMKAC 1 cut(s) 396
Fnu4HI GCNGC 2 cut(s) 279, 303
FokI GGATG 1 cut(s) 557
Fsp4HI GCNGC 2 cut(s) 279, 303
FspI TGCGCA 1 cut(s) 192
GlaI GCGC 1 cut(s) 192
GluI GCNGC 2 cut(s) 279, 303
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 2 cut(s) 94, 556
HapII CCGG 2 cut(s) 231, 580
HhaI GCGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 447
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HindIII AAGCTT 2 cut(s) 180, 714
HinfI GANTC 3 cut(s) 264, 317, 338
HpaII CCGG 2 cut(s) 231, 580
HphI GGTGA 3 cut(s) 338, 356, 594
Hpy166II GTNNAC 1 cut(s) 397
Hpy188I TCNGA 1 cut(s) 269
Hpy188III TCNNGA 5 cut(s) 359, 419, 539, 602, 618
Hpy8I GTNNAC 1 cut(s) 397
HpyAV CCTTC 7 cut(s) 5, 84, 245, 542, 587, 629, 689
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4V TGCA 2 cut(s) 305, 378
HpyF10VI GCNNNNNNNGC 3 cut(s) 188, 299, 471
HpyF3I CTNAG 1 cut(s) 483
Hsp92II CATG 1 cut(s) 447
HspAI GCGC 1 cut(s) 191
Kzo9I GATC 2 cut(s) 143, 272
LmnI GCTCC 1 cut(s) 221
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 2 cut(s) 217, 289
MaeIII GTNAC 2 cut(s) 536, 725
MalI GATC 2 cut(s) 145, 274
MbiI CCGCTC 1 cut(s) 281
MboI GATC 2 cut(s) 143, 272
MboII GAAGA 9 cut(s) 69, 110, 173, 347, 359, 434, 572, 644, 722
MfeI CAATTG 1 cut(s) 212
MhlI GDGCHC 1 cut(s) 137
MluCI AATT 2 cut(s) 212, 402
MmeI TCCRAC 1 cut(s) 665
MroXI GAANNNNTTC 1 cut(s) 78
MseI TTAA 2 cut(s) 526, 628
MslI CAYNNNNRTG 1 cut(s) 543
MspCI CTTAAG 1 cut(s) 627
MspI CCGG 2 cut(s) 231, 580
MunI CAATTG 1 cut(s) 212
MvnI CGCG 1 cut(s) 293
MwoI GCNNNNNNNGC 3 cut(s) 188, 299, 471
NdeII GATC 2 cut(s) 143, 272
NlaIII CATG 1 cut(s) 447
NmuCI GTSAC 1 cut(s) 536
NsbI TGCGCA 1 cut(s) 192
NspV TTCGAA 1 cut(s) 9
PaeR7I CTCGAG 2 cut(s) 99, 357
PdmI GAANNNNTTC 1 cut(s) 78
PfeI GAWTC 3 cut(s) 264, 317, 338
PflFI GACNNNGTC 1 cut(s) 534
PflMI CCANNNNNTGG 1 cut(s) 52
PinAI ACCGGT 1 cut(s) 579
PkrI GCNGC 2 cut(s) 280, 304
PsiI TTATAA 1 cut(s) 204
PspPI GGNCC 1 cut(s) 554
PspXI VCTCGAGB 1 cut(s) 99
PsrI GAACNNNNNNTAC 2 cut(s) 555, 587
PsyI GACNNNGTC 1 cut(s) 534
RsaI GTAC 2 cut(s) 237, 489
RsaNI GTAC 2 cut(s) 236, 488
RseI CAYNNNNRTG 1 cut(s) 543
SaqAI TTAA 2 cut(s) 526, 628
SatI GCNGC 2 cut(s) 279, 303
Sau3AI GATC 2 cut(s) 143, 272
Sau96I GGNCC 1 cut(s) 554
SduI GDGCHC 1 cut(s) 137
SfaNI GCATC 2 cut(s) 217, 289
Sfr274I CTCGAG 2 cut(s) 99, 357
SfuI TTCGAA 1 cut(s) 9
SlaI CTCGAG 2 cut(s) 99, 357
SmiMI CAYNNNNRTG 1 cut(s) 543
SmlI CTYRAG 5 cut(s) 99, 321, 357, 429, 627
SmoI CTYRAG 5 cut(s) 99, 321, 357, 429, 627
Sse9I AATT 2 cut(s) 212, 402
SsiI CCGC 1 cut(s) 279
StyI CCWWGG 1 cut(s) 239
TaaI ACNGT 1 cut(s) 691
TaqI TCGA 5 cut(s) 9, 100, 358, 420, 601
TasI AATT 2 cut(s) 212, 402
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 264, 317, 338
Tru1I TTAA 2 cut(s) 526, 628
Tru9I TTAA 2 cut(s) 526, 628
TscAI CASTG 1 cut(s) 512
TseFI GTSAC 1 cut(s) 536
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 536
TspDTI ATGAA 1 cut(s) 561
TspRI CASTG 1 cut(s) 512
Tth111I GACNNNGTC 1 cut(s) 534
Van91I CCANNNNNTGG 1 cut(s) 52
Vha464I CTTAAG 1 cut(s) 627
XapI RAATTY 1 cut(s) 402
XhoI CTCGAG 2 cut(s) 99, 357
XmiI GTMKAC 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.