MD14G1110600.v1.1

Heat shock protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0000335
Physical Location & Seq
Forward (+)
17566378 .. 17567467
1090 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1110600.v1.1.491

Sequence Viewer

Length: 930 bp
ATGGCAGCTCGAAACATTCTATTTATTCCAAAACAAGCTCCATTTGATCTTTTCGACACGAGGAAGAAGGAGAACAACATCAAGCTCTATGTGAGGAAGCAGAACAAGATTCTTAAGGTTATTAGGAAGAATTTGGTCAAGAAGTGCATTGAGCTGTTCAATGAGATTGCTGAGAATAAAGAAGATTATATGAAGTTTTACGAGGCTTTCTCTAAGAATATCAAGTTGGGAATCCATGAGGACAACCAGAATAGGCGTAAGTTGGCTAATTTGCTCAAGTACCACTCCACGAAGAGCGATGATGAGATGACAAGCTTGAAGGATTATGTTACGAAGATGAAGGAAGGCCAAAATCACATTTACTACATCACCGGTGAGAGTAGGAAGGCAGTGGAGAACTCACCCTTCTTGGAAAGGCTTAAGCGGAAGGGGTATAAGGTGATCTTTATGGTTGATGCCATTGACGAATATATTGTTGGGCAATTGAAAAAGTACGATGGGAAAAAGCTCGTGTCACCAACCAAGGAAGGGCTTAAGCTCGAGGACGAATCAGAGGAAGAGAAGCAGAAAAATGAGGAGAAGAAACAGTCGTTCAAGAACTTGTGCAAGACGATCAAGGACATTCTTAGGGAGAGAGTTGAGAAGGTGGTGGTGTCTGATAGAATTGTGGACTCGCCTTGCTACTTGTTGACCGGAGAATACAGGTGGACAACCAACATGGAGAAGATCATGAAGGCTAAGGCTTCGAGGGACAACACCATGAGCGGTTACATGTCCAGCAAGAAGATTATGGAGATTAACCTTGACCAAGGCATAGTGGATGAGCTAAGGAAGAGGGTTGACACTGATAAGAATAACAACCTTGATGATCCTAACAGCTTTGCCGGGAGAATTCACAGGATGCTGAAATTGGGTCTGAGCATCGACTAG

Protein Analysis

310

Amino Acids

36.35

Weight (kDa)

9.4

Isoelectric Point (pI)

43.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP90 PF00183 4 - 33 1.1e-06 Hsp90 protein
HSP90 PF00183 34 - 287 7e-108 Hsp90 protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 765
AciI CCGC 2 cut(s) 424, 765
AclWI GGATC 1 cut(s) 863
AcsI RAATTY 2 cut(s) 130, 891
AfaI GTAC 2 cut(s) 281, 494
AfiI CCNNNNNNNGG 1 cut(s) 528
AflII CTTAAG 3 cut(s) 113, 419, 533
AflIII ACRYGT 1 cut(s) 771
AgeI ACCGGT 1 cut(s) 371
AgsI TTSAA 4 cut(s) 160, 319, 487, 595
AjuI GAANNNNNNNTTGG 4 cut(s) 209, 241, 459, 491
AluBI AGCT 9 cut(s) 8, 38, 85, 154, 315, 508, 538, 826, 879
AluI AGCT 9 cut(s) 8, 38, 85, 154, 315, 508, 538, 826, 879
AlwI GGATC 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 539
AoxI GGCC 1 cut(s) 346
ApeKI GCWGC 1 cut(s) 5
ApoI RAATTY 2 cut(s) 130, 891
AsiGI ACCGGT 1 cut(s) 371
AsuC2I CCSGG 1 cut(s) 886
AsuHPI GGTGA 5 cut(s) 361, 386, 393, 451, 507
AvaI CYCGRG 1 cut(s) 539
BauI CACGAG 2 cut(s) 58, 509
BbvI GCAGC 1 cut(s) 17
BccI CCATC 1 cut(s) 491
BcnI CCSGG 1 cut(s) 886
BfaI CTAG 1 cut(s) 928
BfrI CTTAAG 3 cut(s) 113, 419, 533
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 886
BmeT110I CYCGRG 1 cut(s) 539
BmrFI CCNGG 1 cut(s) 886
BmsI GCATC 2 cut(s) 445, 891
BplI GAGNNNNNCTC 2 cut(s) 194, 226
Bpu10I CCTNAGC 2 cut(s) 738, 827
BpuEI CTTGAG 1 cut(s) 260
BpuMI CCSGG 1 cut(s) 886
BsaJI CCNNGG 2 cut(s) 522, 808
BsaWI WCCGGW 2 cut(s) 371, 692
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse118I RCCGGY 1 cut(s) 371
BseDI CCNNGG 2 cut(s) 522, 808
BseGI GGATG 2 cut(s) 826, 906
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 162, 908
BseRI GAGGAG 1 cut(s) 590
BseXI GCAGC 1 cut(s) 17
BshFI GGCC 1 cut(s) 348
BshTI ACCGGT 1 cut(s) 371
BsiHKCI CYCGRG 1 cut(s) 539
BsiSI CCGG 3 cut(s) 372, 693, 885
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 1 cut(s) 528
BsmFI GGGAC 1 cut(s) 764
BsnI GGCC 1 cut(s) 348
BsoBI CYCGRG 1 cut(s) 539
Bsp143I GATC 5 cut(s) 46, 441, 612, 726, 868
BspACI CCGC 2 cut(s) 424, 765
BspANI GGCC 1 cut(s) 348
BspCNI CTCAG 2 cut(s) 163, 909
BspHI TCATGA 1 cut(s) 729
BspPI GGATC 1 cut(s) 863
BspQI GCTCTTC 1 cut(s) 287
BspTI CTTAAG 3 cut(s) 113, 419, 533
BsrBI CCGCTC 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 371
BssAI RCCGGY 1 cut(s) 371
BssECI CCNNGG 2 cut(s) 522, 808
BssMI GATC 5 cut(s) 46, 441, 612, 726, 868
BssSI CACGAG 2 cut(s) 58, 509
BssT1I CCWWGG 2 cut(s) 522, 808
Bst2BI CACGAG 2 cut(s) 58, 509
Bst4CI ACNGT 1 cut(s) 588
Bst6I CTCTTC 3 cut(s) 287, 552, 827
BstAFI CTTAAG 3 cut(s) 113, 419, 533
BstDEI CTNAG 6 cut(s) 171, 213, 626, 738, 827, 917
BstF5I GGATG 2 cut(s) 826, 906
BstKTI GATC 5 cut(s) 49, 444, 615, 729, 871
BstMBI GATC 5 cut(s) 46, 441, 612, 726, 868
BstNSI RCATGY 1 cut(s) 775
BstSCI CCNGG 1 cut(s) 884
BstV1I GCAGC 1 cut(s) 17
BsuRI GGCC 1 cut(s) 348
BtgZI GCGATG 1 cut(s) 312
BtsCI GGATG 2 cut(s) 826, 906
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 843
CciI TCATGA 1 cut(s) 729
Cfr10I RCCGGY 1 cut(s) 371
Csp6I GTAC 2 cut(s) 280, 493
CspAI ACCGGT 1 cut(s) 371
CviAII CATG 5 cut(s) 236, 718, 730, 760, 772
CviQI GTAC 2 cut(s) 280, 493
DdeI CTNAG 6 cut(s) 171, 213, 626, 738, 827, 917
DpnI GATC 5 cut(s) 48, 443, 614, 728, 870
DpnII GATC 5 cut(s) 46, 441, 612, 726, 868
Eam1104I CTCTTC 3 cut(s) 287, 552, 827
EarI CTCTTC 3 cut(s) 287, 552, 827
Eco130I CCWWGG 2 cut(s) 522, 808
Eco88I CYCGRG 1 cut(s) 539
EcoRI GAATTC 1 cut(s) 891
EcoT14I CCWWGG 2 cut(s) 522, 808
ErhI CCWWGG 2 cut(s) 522, 808
FaeI CATG 5 cut(s) 239, 721, 733, 763, 775
FalI AAGNNNNNCTT 2 cut(s) 428, 460
FaqI GGGAC 1 cut(s) 764
FatI CATG 5 cut(s) 235, 717, 729, 759, 771
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 2 cut(s) 833, 913
Fsp4HI GCNGC 1 cut(s) 6
FspBI CTAG 1 cut(s) 928
GluI GCNGC 1 cut(s) 6
HaeIII GGCC 1 cut(s) 348
HapII CCGG 3 cut(s) 372, 693, 885
Hin1II CATG 5 cut(s) 239, 721, 733, 763, 775
HincII GTYRAC 2 cut(s) 690, 841
HindII GTYRAC 2 cut(s) 690, 841
HindIII AAGCTT 1 cut(s) 313
HinfI GANTC 4 cut(s) 109, 231, 548, 671
HpaII CCGG 3 cut(s) 372, 693, 885
HphI GGTGA 5 cut(s) 361, 386, 393, 451, 507
Hpy166II GTNNAC 4 cut(s) 670, 690, 708, 841
Hpy188I TCNGA 3 cut(s) 553, 658, 918
Hpy188III TCNNGA 3 cut(s) 139, 595, 730
Hpy8I GTNNAC 4 cut(s) 670, 690, 708, 841
HpyCH4III ACNGT 1 cut(s) 588
HpyCH4V TGCA 2 cut(s) 147, 606
HpyF3I CTNAG 6 cut(s) 171, 213, 626, 738, 827, 917
Hsp92II CATG 5 cut(s) 239, 721, 733, 763, 775
Kzo9I GATC 5 cut(s) 46, 441, 612, 726, 868
LguI GCTCTTC 1 cut(s) 287
LmnI GCTCC 1 cut(s) 43
LpnPI CCDG 7 cut(s) 260, 385, 688, 706, 790, 883, 898
Lsp1109I GCAGC 1 cut(s) 17
LweI GCATC 2 cut(s) 445, 891
MaeI CTAG 1 cut(s) 928
MaeIII GTNAC 3 cut(s) 328, 513, 767
MalI GATC 5 cut(s) 48, 443, 614, 728, 870
MbiI CCGCTC 1 cut(s) 765
MboI GATC 5 cut(s) 46, 441, 612, 726, 868
MfeI CAATTG 1 cut(s) 482
MluCI AATT 6 cut(s) 130, 268, 482, 663, 891, 908
MlyI GAGTC 1 cut(s) 665
MnlI CCTC 9 cut(s) 54, 87, 196, 232, 535, 547, 568, 741, 828
MseI TTAA 4 cut(s) 114, 420, 534, 798
MspCI CTTAAG 3 cut(s) 113, 419, 533
MspI CCGG 3 cut(s) 372, 693, 885
MspR9I CCNGG 1 cut(s) 886
MunI CAATTG 1 cut(s) 482
NciI CCSGG 1 cut(s) 886
NdeII GATC 5 cut(s) 46, 441, 612, 726, 868
NlaIII CATG 5 cut(s) 239, 721, 733, 763, 775
NmuCI GTSAC 1 cut(s) 513
NspI RCATGY 1 cut(s) 775
PaeR7I CTCGAG 1 cut(s) 539
PagI TCATGA 1 cut(s) 729
PciI ACATGT 1 cut(s) 771
PciSI GCTCTTC 1 cut(s) 287
PfeI GAWTC 3 cut(s) 109, 231, 548
PinAI ACCGGT 1 cut(s) 371
PkrI GCNGC 1 cut(s) 7
PleI GAGTC 1 cut(s) 665
PpsI GAGTC 1 cut(s) 665
PscI ACATGT 1 cut(s) 771
PspXI VCTCGAGB 1 cut(s) 539
RsaI GTAC 2 cut(s) 281, 494
RsaNI GTAC 2 cut(s) 280, 493
SapI GCTCTTC 1 cut(s) 287
SaqAI TTAA 4 cut(s) 114, 420, 534, 798
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 5 cut(s) 46, 441, 612, 726, 868
SchI GAGTC 1 cut(s) 665
ScrFI CCNGG 1 cut(s) 886
SfaNI GCATC 2 cut(s) 445, 891
Sfr274I CTCGAG 1 cut(s) 539
SgrAI CRCCGGYG 1 cut(s) 371
SlaI CTCGAG 1 cut(s) 539
SmlI CTYRAG 5 cut(s) 113, 275, 419, 533, 539
SmoI CTYRAG 5 cut(s) 113, 275, 419, 533, 539
Sse9I AATT 6 cut(s) 130, 268, 482, 663, 891, 908
SsiI CCGC 2 cut(s) 424, 765
SspMI CTAG 1 cut(s) 928
StyD4I CCNGG 1 cut(s) 884
StyI CCWWGG 2 cut(s) 522, 808
TaaI ACNGT 1 cut(s) 588
TaqI TCGA 5 cut(s) 10, 54, 540, 746, 924
TasI AATT 6 cut(s) 130, 268, 482, 663, 891, 908
TfiI GAWTC 3 cut(s) 109, 231, 548
Tru1I TTAA 4 cut(s) 114, 420, 534, 798
Tru9I TTAA 4 cut(s) 114, 420, 534, 798
TscAI CASTG 2 cut(s) 396, 850
TseFI GTSAC 1 cut(s) 513
TseI GCWGC 1 cut(s) 5
Tsp45I GTSAC 1 cut(s) 513
TspDTI ATGAA 3 cut(s) 206, 353, 746
TspRI CASTG 2 cut(s) 396, 850
Vha464I CTTAAG 3 cut(s) 113, 419, 533
XapI RAATTY 2 cut(s) 130, 891
XceI RCATGY 1 cut(s) 775
XhoI CTCGAG 1 cut(s) 539
XspI CTAG 1 cut(s) 928
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.