Rmu_sc0001083.1_g000031

Heat shock protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001083.1
Physical Location & Seq
Forward (+)
186011 .. 186301
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001083.1_g000031.1.cds

Sequence Viewer

Length: 291 bp
atggagattaatccagacaatcctatagtggaggagctgaggaagagggtcgagactgatgagaatgacaagtcggtgaaggacattgtgctgctgctctatgagaccgctctgttgagttcggggttcagccttgatgatcccaacaggtttgctgggaggattcacaggatgctgaaactgggtctcagcattgatgaagatgatgaccctgaactagttgatgatgtcgacatgcctccgttggaggagaataaggttgaggaaagccagatggaagaagttgactga

Protein Analysis

96

Amino Acids

11.01

Weight (kDa)

4.1

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000335)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G52640
fragaria_vesca FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 110
AccI GTMKAC 1 cut(s) 231
AciI CCGC 1 cut(s) 108
AclWI GGATC 1 cut(s) 134
AhlI ACTAGT 1 cut(s) 217
AluBI AGCT 1 cut(s) 37
AluI AGCT 1 cut(s) 37
Alw26I GTCTC 3 cut(s) 47, 98, 191
AlwI GGATC 1 cut(s) 134
ApeKI GCWGC 2 cut(s) 91, 94
AseI ATTAAT 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 88
BbvCI CCTCAGC 1 cut(s) 38
BbvI GCAGC 2 cut(s) 78, 81
BccI CCATC 1 cut(s) 268
BcoDI GTCTC 3 cut(s) 47, 98, 191
BcuI ACTAGT 1 cut(s) 217
BfaI CTAG 1 cut(s) 218
BfmI CTRYAG 1 cut(s) 24
BisI GCNGC 2 cut(s) 92, 95
BlsI GCNGC 2 cut(s) 93, 96
BmrI ACTGGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 162
BmuI ACTGGG 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 38
BsaI GGTCTC 2 cut(s) 98, 191
Bse1I ACTGG 1 cut(s) 186
BseGI GGATG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 29, 202
BseNI ACTGG 1 cut(s) 186
BseRI GAGGAG 2 cut(s) 47, 263
BseXI GCAGC 2 cut(s) 78, 81
BseYI CCCAGC 1 cut(s) 155
BsmAI GTCTC 3 cut(s) 47, 98, 191
Bso31I GGTCTC 2 cut(s) 98, 191
Bsp143I GATC 1 cut(s) 139
BspACI CCGC 1 cut(s) 108
BspCNI CTCAG 2 cut(s) 30, 201
BspPI GGATC 1 cut(s) 134
BspTNI GGTCTC 2 cut(s) 98, 191
BsrBI CCGCTC 1 cut(s) 110
BsrI ACTGG 1 cut(s) 186
BssMI GATC 1 cut(s) 139
Bst6I CTCTTC 1 cut(s) 38
BstDEI CTNAG 2 cut(s) 38, 188
BstF5I GGATG 1 cut(s) 177
BstKTI GATC 1 cut(s) 142
BstMAI GTCTC 3 cut(s) 47, 98, 191
BstMBI GATC 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 238
BstSFI CTRYAG 1 cut(s) 24
BstV1I GCAGC 2 cut(s) 78, 81
BtsCI GGATG 1 cut(s) 177
CviAII CATG 1 cut(s) 235
CviJI RGCY 3 cut(s) 37, 132, 270
CviKI_1 RGCY 3 cut(s) 37, 132, 270
DdeI CTNAG 2 cut(s) 38, 188
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
Eco31I GGTCTC 2 cut(s) 98, 191
FaeI CATG 1 cut(s) 238
FaiI YATR 3 cut(s) 26, 102, 236
FatI CATG 1 cut(s) 234
FblI GTMKAC 1 cut(s) 231
Fnu4HI GCNGC 2 cut(s) 92, 95
FokI GGATG 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 92, 95
FspBI CTAG 1 cut(s) 218
GluI GCNGC 2 cut(s) 92, 95
GsaI CCCAGC 1 cut(s) 159
Hin1II CATG 1 cut(s) 238
HincII GTYRAC 2 cut(s) 232, 286
HindII GTYRAC 2 cut(s) 232, 286
HinfI GANTC 1 cut(s) 163
HphI GGTGA 1 cut(s) 88
Hpy166II GTNNAC 2 cut(s) 232, 286
Hpy188III TCNNGA 2 cut(s) 14, 52
Hpy8I GTNNAC 2 cut(s) 232, 286
HpyAV CCTTC 1 cut(s) 73
HpyF3I CTNAG 2 cut(s) 38, 188
Hsp92II CATG 1 cut(s) 238
Kzo9I GATC 1 cut(s) 139
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 7 cut(s) 27, 133, 141, 154, 167, 225, 284
Lsp1109I GCAGC 2 cut(s) 78, 81
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 218
MalI GATC 1 cut(s) 141
MbiI CCGCTC 1 cut(s) 110
MboI GATC 1 cut(s) 139
MboII GAAGA 3 cut(s) 55, 212, 290
MmeI TCCRAC 1 cut(s) 225
MnlI CCTC 7 cut(s) 25, 33, 39, 153, 241, 249, 256
MseI TTAA 1 cut(s) 9
NdeII GATC 1 cut(s) 139
NlaIII CATG 1 cut(s) 238
NspI RCATGY 1 cut(s) 238
PfeI GAWTC 1 cut(s) 163
PkrI GCNGC 2 cut(s) 93, 96
PshBI ATTAAT 1 cut(s) 9
PspFI CCCAGC 1 cut(s) 155
SalI GTCGAC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 9
SatI GCNGC 2 cut(s) 92, 95
Sau3AI GATC 1 cut(s) 139
SetI ASST 3 cut(s) 39, 152, 261
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 24
SpeI ACTAGT 1 cut(s) 217
SsiI CCGC 1 cut(s) 108
SspMI CTAG 1 cut(s) 218
TaqI TCGA 2 cut(s) 51, 231
TfiI GAWTC 1 cut(s) 163
Tru1I TTAA 1 cut(s) 9
Tru9I TTAA 1 cut(s) 9
TseI GCWGC 2 cut(s) 91, 94
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 231
VspI ATTAAT 1 cut(s) 9
XceI RCATGY 1 cut(s) 238
XmiI GTMKAC 1 cut(s) 231
XspI CTAG 1 cut(s) 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.