Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0000335

Physical Location & Seq

Genomic Coordinates Forward (+)

15556924 .. 15557940

Gene Structure 1017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ30141

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTATGATGGGAAGAAGCTCGTGTCTGCTACAAAGGAAGGTCTGAAGCTTGACGATGAAACTGAGGAAGAGAAGAAGAAGAAAGAGGAGAAGAAGAAGTCTTTTGAGGATCTTTGCAAGACAATCAAAGCCATCTTGGGAGACAGGGTTGAGAAGGTGGTTGTGTCTGATAGAATTGTCAACTCACCTTGCTGCTTGGTCACTGGTGAATATGGATGGAGTGCAAACATGGAGAGGATTATGAAGGCTCAGGCACTCAGGGACAACAGCATGGGTGCTTACATGTCCAGCAAGAAGACCATGAAAATCAACCCTGACAATGGCATCATGGAGGAGCTGAGGAAGAGAGCCAAAGCTGACAAAAATGACAAGTCTGTCAAGGACCTTGTGCTGCTGCTGTTTGAGACAGCTCTGCTGACATCTGGATTCAGCCTTGATGAGCCGAACACATTTGCCTCGAGAATTCACAGGATGCTGAACAAATTACAGATATACAAGATCCTTTGTATACAAAAGCTCTTAATTTGGACCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0006457 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0042742 GO:0043207 GO:0045087 GO:0050896 GO:0051704 GO:0051707 GO:0061077 GO:0098542

KEGG Pathways

Metabolic & Signaling

ko04141 ko04151 ko04217 ko04612 ko04621 ko04626 ko04657 ko04659 ko04914 ko04915 ko05200 ko05215 ko05418 map04141 map04151 map04217 map04612 map04621 map04626 map04657 map04659 map04914 map04915 map05200 map05215 map05418

Pfam Domains

Protein Families

HATPase_c HSP90

Protein Analysis

178

Amino Acids

20.33

Weight (kDa)

9.14

Isoelectric Point (pI)

31.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSP90	PF00183	2 - 161	3.6e-65	Hsp90 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000335)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G52640
fragaria_vesca	FvH4_2g04730 FvH4_2g04730 FvH4_2g04730 FvH4_2g13180 FvH4_7g30260 FvH4_7g30272
malus_domestica	MD00G1081900.v1.1 MD01G1208700.v1.1 MD07G1279100.v1.1 MD07G1279200.v1.1 MD11G1152300.v1.1 MD14G1110500.v1.1 MD14G1110600.v1.1
prunus_persica	Prupe.2G301300_v2.0.a1 Prupe.5G041100_v2.0.a1 Prupe.5G105600_v2.0.a1
pyrus_communis	pycom01g21930 pycom07g25400 pycom09g11140 pycom14g10530
rosa_chinensis	RchiOBHm_Chr1g0327061 RchiOBHm_Chr1g0378391 RchiOBHm_Chr1g0379711 RchiOBHm_Chr3g0488481 RchiOBHm_Chr4g0387881 RchiOBHm_Chr5g0021331 RchiOBHm_Chr5g0021341 RchiOBHm_Chr5g0021351 RchiOBHm_Chr6g0274441 RchiOBHm_Chr7g0196751 RchiOBHm_Chr7g0196771
rosa_laevigata	RLG00000003992 RLG00000008392 RLG00000009018 RLG00000013542 RLG00000026364 RLG00000026365 RLG00000026438 RLG00000032605
rosa_multiflora	Rmu_co8309643.1_g000001 Rmu_co8423093.1_g000001 Rmu_co8520529.1_g000002 Rmu_sc0000938.1_g000001 Rmu_sc0001083.1_g000031 Rmu_sc0001289.1_g000016 Rmu_sc0001777.1_g000013 Rmu_sc0003392.1_g000006 Rmu_sc0003600.1_g000010 Rmu_sc0004484.1_g000024 Rmu_sc0004847.1_g000017 Rmu_sc0009850.1_g000016 Rmu_sc0013411.1_g000009 Rmu_sc0024337.1_g000001 Rmu_sc0024338.1_g000001 Rmu_sc0029385.1_g000001 Rmu_sc0039495.1_g000001 Rmu_ssc0000259.1_g000042
rosa_roxburghii	Rroxscaffold_1G00057180 Rroxscaffold_3G00258970 Rroxscaffold_3G00258980 Rroxscaffold_4G00280480 Rroxscaffold_7G00194220 Rroxscaffold_7G00197660
rosa_rugosa	Rorug01G0408500 Rorug05G0066400 Rorug05G0066500 Rorug06G0081900 Rorug07G0036200
rosa_samantha	Rh1AG083900 Rh1AG430000 Rh1AG438200 Rh1AG438300 Rh1BG387700 Rh1BG394700 Rh1BG394800 Rh1CG081800 Rh1CG401200 Rh1CG407700 Rh1CG407800 Rh1DG327400 Rh1DG418800 Rh1DG425100 Rh1DG425200 Rh2AG541400 Rh2CG384100 Rh2CG524100 Rh4DG107200 Rh5AG155400 Rh5AG155500 Rh5AG155600 Rh5BG155000 Rh5BG155100 Rh5CG168500 Rh5CG168600 Rh5CG168700 Rh5DG155600 Rh6AG198300 Rh6BG201600 Rh6BG491300 Rh6CG202400 Rh6DG192800 Rh7AG160000 Rh7AG160100 Rh7BG162200 Rh7CG168600 Rh7DG161300
rosa_wichuraiana	Rw1G037630 Rw5G013860 Rw6G017240 Rw7G013990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	374
AccI	GTMKAC	1 cut(s)	508
AclWI	GGATC	2 cut(s)	117, 493
AcsI	RAATTY	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	65
AfiI	CCNNNNNNNGG	1 cut(s)	320
AflIII	ACRYGT	1 cut(s)	282
AluBI	AGCT	6 cut(s)	19, 49, 337, 356, 410, 517
AluI	AGCT	6 cut(s)	19, 49, 337, 356, 410, 517
Alw26I	GTCTC	2 cut(s)	135, 398
AlwI	GGATC	2 cut(s)	117, 493
Ama87I	CYCGRG	1 cut(s)	457
ApeKI	GCWGC	3 cut(s)	192, 391, 394
ApoI	RAATTY	1 cut(s)	462
AspS9I	GGNCC	2 cut(s)	382, 528
AsuHPI	GGTGA	2 cut(s)	177, 218
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	2 cut(s)	382, 528
BauI	CACGAG	1 cut(s)	20
BbsI	GAAGAC	1 cut(s)	302
BbvCI	CCTCAGC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	179, 378, 381
BccI	CCATC	3 cut(s)	2, 140, 210
BcoDI	GTCTC	2 cut(s)	135, 398
BfaI	CTAG	1 cut(s)	535
BisI	GCNGC	3 cut(s)	193, 392, 395
BlsI	GCNGC	3 cut(s)	194, 393, 396
Bme18I	GGWCC	2 cut(s)	382, 528
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	2 cut(s)	382, 528
BmsI	GCATC	2 cut(s)	333, 462
BpiI	GAAGAC	1 cut(s)	302
Bpu10I	CCTNAGC	2 cut(s)	249, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	132, 162
Bsc4I	CCNNNNNNNGG	1 cut(s)	320
Bse1I	ACTGG	1 cut(s)	208
BseGI	GGATG	2 cut(s)	221, 477
BseLI	CCNNNNNNNGG	1 cut(s)	320
BseMII	CTCAG	4 cut(s)	54, 263, 271, 329
BseNI	ACTGG	1 cut(s)	208
BseRI	GAGGAG	2 cut(s)	101, 347
BseXI	GCAGC	3 cut(s)	179, 378, 381
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	1 cut(s)	275
BslI	CCNNNNNNNGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	135, 398
BsmFI	GGGAC	1 cut(s)	275
BsoBI	CYCGRG	1 cut(s)	457
Bsp143I	GATC	2 cut(s)	109, 498
BspCNI	CTCAG	4 cut(s)	55, 262, 270, 330
BspPI	GGATC	2 cut(s)	117, 493
BsrI	ACTGG	1 cut(s)	208
BssMI	GATC	2 cut(s)	109, 498
BssNAI	GTATAC	1 cut(s)	509
BssSI	CACGAG	1 cut(s)	20
Bst1107I	GTATAC	1 cut(s)	509
Bst2BI	CACGAG	1 cut(s)	20
Bst6I	CTCTTC	2 cut(s)	63, 338
BstDEI	CTNAG	4 cut(s)	63, 249, 257, 338
BstF5I	GGATG	2 cut(s)	221, 477
BstKTI	GATC	2 cut(s)	112, 501
BstMAI	GTCTC	2 cut(s)	135, 398
BstMBI	GATC	2 cut(s)	109, 498
BstNSI	RCATGY	1 cut(s)	286
BstV1I	GCAGC	3 cut(s)	179, 378, 381
BstV2I	GAAGAC	1 cut(s)	302
BstX2I	RGATCY	2 cut(s)	109, 498
BstYI	RGATCY	2 cut(s)	109, 498
BstZ17I	GTATAC	1 cut(s)	509
BtsCI	GGATG	2 cut(s)	221, 477
BtsIMutI	CAGTG	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	382, 528
CviAII	CATG	5 cut(s)	229, 271, 283, 301, 328
DdeI	CTNAG	4 cut(s)	63, 249, 257, 338
DpnI	GATC	2 cut(s)	111, 500
DpnII	GATC	2 cut(s)	109, 498
DrdI	GACNNNNNNGTC	1 cut(s)	374
DseDI	GACNNNNNNGTC	1 cut(s)	374
Eam1104I	CTCTTC	2 cut(s)	63, 338
EarI	CTCTTC	2 cut(s)	63, 338
Eco47I	GGWCC	2 cut(s)	382, 528
Eco57I	CTGAAG	1 cut(s)	65
Eco88I	CYCGRG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	382
EcoRI	GAATTC	1 cut(s)	462
FaeI	CATG	5 cut(s)	232, 274, 286, 304, 331
FaqI	GGGAC	1 cut(s)	275
FatI	CATG	5 cut(s)	228, 270, 282, 300, 327
FblI	GTMKAC	1 cut(s)	508
Fnu4HI	GCNGC	3 cut(s)	193, 392, 395
FokI	GGATG	2 cut(s)	228, 484
Fsp4HI	GCNGC	3 cut(s)	193, 392, 395
FspBI	CTAG	1 cut(s)	535
GluI	GCNGC	3 cut(s)	193, 392, 395
Hin1II	CATG	5 cut(s)	232, 274, 286, 304, 331
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	1 cut(s)	426
HphI	GGTGA	2 cut(s)	177, 218
Hpy166II	GTNNAC	2 cut(s)	181, 509
Hpy188I	TCNGA	2 cut(s)	45, 169
Hpy188III	TCNNGA	2 cut(s)	423, 459
Hpy8I	GTNNAC	2 cut(s)	181, 509
HpyAV	CCTTC	3 cut(s)	32, 148, 238
HpyCH4V	TGCA	2 cut(s)	117, 224
HpyF3I	CTNAG	4 cut(s)	63, 249, 257, 338
Hsp92II	CATG	5 cut(s)	232, 274, 286, 304, 331
Kzo9I	GATC	2 cut(s)	109, 498
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	8 cut(s)	130, 189, 236, 244, 301, 327, 408, 454
Lsp1109I	GCAGC	3 cut(s)	179, 378, 381
LweI	GCATC	2 cut(s)	333, 462
MaeI	CTAG	1 cut(s)	535
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	111, 500
MboI	GATC	2 cut(s)	109, 498
MboII	GAAGA	9 cut(s)	25, 80, 85, 88, 91, 103, 106, 307, 355
MflI	RGATCY	2 cut(s)	109, 498
MluCI	AATT	4 cut(s)	174, 462, 482, 522
MnlI	CCTC	7 cut(s)	58, 79, 100, 228, 325, 333, 466
MseI	TTAA	1 cut(s)	521
NdeII	GATC	2 cut(s)	109, 498
NlaIII	CATG	5 cut(s)	232, 274, 286, 304, 331
NmuCI	GTSAC	1 cut(s)	199
NspI	RCATGY	1 cut(s)	286
PaeR7I	CTCGAG	1 cut(s)	457
PciI	ACATGT	1 cut(s)	282
PfeI	GAWTC	1 cut(s)	426
PkrI	GCNGC	3 cut(s)	194, 393, 396
PpuMI	RGGWCCY	1 cut(s)	382
PscI	ACATGT	1 cut(s)	282
Psp5II	RGGWCCY	1 cut(s)	382
PspPI	GGNCC	2 cut(s)	382, 528
PspPPI	RGGWCCY	1 cut(s)	382
PsuI	RGATCY	2 cut(s)	109, 498
SaqAI	TTAA	1 cut(s)	521
SatI	GCNGC	3 cut(s)	193, 392, 395
Sau3AI	GATC	2 cut(s)	109, 498
Sau96I	GGNCC	2 cut(s)	382, 528
SfaNI	GCATC	2 cut(s)	333, 462
Sfr274I	CTCGAG	1 cut(s)	457
SinI	GGWCC	2 cut(s)	382, 528
SlaI	CTCGAG	1 cut(s)	457
SmlI	CTYRAG	1 cut(s)	457
SmoI	CTYRAG	1 cut(s)	457
Sse9I	AATT	4 cut(s)	174, 462, 482, 522
SspMI	CTAG	1 cut(s)	535
TaqI	TCGA	1 cut(s)	458
TasI	AATT	4 cut(s)	174, 462, 482, 522
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	199
TseI	GCWGC	3 cut(s)	192, 391, 394
Tsp45I	GTSAC	1 cut(s)	199
TspDTI	ATGAA	3 cut(s)	72, 257, 317
TspRI	CASTG	1 cut(s)	208
VpaK11BI	GGWCC	2 cut(s)	382, 528
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	457
XmiI	GTMKAC	1 cut(s)	508
XspI	CTAG	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.